FvH4_5g20130

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000355
Physical Location & Seq
Reverse (-)
11865378 .. 11869058
3681 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20130.t5

Sequence Viewer

Length: 1161 bp
ATGGAAAATTCTGAGCTACCAGCGTATAAGCGGTGTAGAGTCTCTGCTGTTCGTGACTTTCCTATTGGGTGTGGACCATTTGCTCACTTGAGTAATTTGAATGCCAATGGTACAGAGAAGATTTCAGATAAAAAATATCCTCCTCGATCAGTAGAAGCTGTTCGGGATTTTCCACCTTTATGTGGGATCAATGCTTCTCCGGAGGCCAGGAAATTCAGCAAAGAGAAGTCAGTTAGGGGTTATAAGCCCTTGTCATCAAAGACAGCGAAGAATAATGAGAAACAAACAGGACTTGGGAACAAAGTTCAACCCAACATTGAGAAGAAAATTGGAGGACACTCTCTAAAGAAGAATAATCATGTACCAGTAAAGGCTGCTTGTCAAGGTACAAGTCAGCCTGATATAAGGAAGAAGGAGTATTCTCAGCATGATGAAAAAGAACATAATCTTGTGATTCCAAAATCACGGAGTACAGATGGGTGCCCTCCTCCTTTTGGTTATAGTAGTTTGAGCCGCAGAAGTCATGATAATGACACGAGTGAAAGGAACAAGGTAAAGGAGATATTGCATTTGTTCCGAGATGAATGTCAGAAGCTCTTGCTGGAGGAAGAAAATAAAAGGTCAAGGGGTGTGGGAACTTCTCACCGAAGGGTTGATTTGGAAGCCTTCAAGATCCTCAAGGATAGGGGAATCTCTATAAAATCAGGCAAACATGTCATAGGAGATATTCCAGGAGTTGAAATTGGTGATAAGTTTCATTACCGAGTGGAACTTATCCTTATTGGCCTCCATCACCAGATACAAAGTGGTATAGCTTATGGACATTTCGGTGGAAAGGTCCTTGCAACCAGTATCGTTGCATCTGGTGGCTATGCAGATGATTTGCATAGTAAAGATTCATTGATCTATACTGGCCATGGAGGAAATGCAAATCCAAAGGACCCTCAAGATCAGAAGCTTGAACGGGGAAATCTTGCTTTAAAGAATAGTGTGCAAAAGAACCCTGTTAGAGTGATCCGTGGCTCCGAACTAGTGGATGGAAGCAGGACATATTTCTATGATGGATTATATATGGTAGAGAAATGTTGGCAGGGTAGAGGTGCTCATGGTAAGCTTGTTTTCAAGTTTCAGATGAACAGAATTGGAAGCATTGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

387

Amino Acids

42.91

Weight (kDa)

9.59

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 319 - 460 9.8e-48 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 480
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 2 cut(s) 31, 514
AclWI GGATC 3 cut(s) 194, 667, 1009
AcoI YGGCCR 1 cut(s) 913
AcsI RAATTY 2 cut(s) 7, 212
AfaI GTAC 4 cut(s) 112, 363, 388, 472
AfiI CCNNNNNNNGG 2 cut(s) 182, 494
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 6 cut(s) 100, 308, 670, 740, 962, 1123
AhlI ACTAGT 1 cut(s) 1030
AjnI CCWGG 2 cut(s) 206, 730
AluBI AGCT 6 cut(s) 16, 158, 595, 815, 958, 1114
AluI AGCT 6 cut(s) 16, 158, 595, 815, 958, 1114
Alw21I GWGCWC 1 cut(s) 1105
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 3 cut(s) 194, 667, 1009
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 3 cut(s) 204, 784, 913
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 2 cut(s) 7, 212
Asp700I GAANNNNTTC 1 cut(s) 159
AspS9I GGNCC 3 cut(s) 74, 838, 940
AsuHPI GGTGA 3 cut(s) 635, 758, 785
AvaII GGWCC 3 cut(s) 74, 838, 940
BaeGI GKGCMC 1 cut(s) 485
BalI TGGCCA 1 cut(s) 915
BanI GGYRCC 1 cut(s) 480
BauI CACGAG 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 1105
BbvI GCAGC 1 cut(s) 361
BccI CCATC 4 cut(s) 470, 798, 1031, 1055
BciT130I CCWGG 2 cut(s) 208, 732
BcoDI GTCTC 1 cut(s) 46
BcuI ACTAGT 1 cut(s) 1030
BfaI CTAG 1 cut(s) 1031
BisI GCNGC 2 cut(s) 375, 514
BlsI GCNGC 2 cut(s) 376, 515
Bme1390I CCNGG 2 cut(s) 208, 732
Bme18I GGWCC 3 cut(s) 74, 838, 940
BmgT120I GGNCC 3 cut(s) 74, 838, 940
BmiI GGNNCC 3 cut(s) 482, 942, 1024
BmrFI CCNGG 2 cut(s) 208, 732
BmsI GCATC 1 cut(s) 869
BpmI CTGGAG 1 cut(s) 623
BpuEI CTTGAG 3 cut(s) 109, 662, 930
BsaJI CCNNGG 2 cut(s) 916, 1018
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 494
Bse1I ACTGG 3 cut(s) 365, 849, 916
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 2 cut(s) 208, 732
BseDI CCNNGG 2 cut(s) 916, 1018
BseGI GGATG 1 cut(s) 1042
BseLI CCNNNNNNNGG 2 cut(s) 182, 494
BseMII CTCAG 1 cut(s) 437
BseNI ACTGG 3 cut(s) 365, 849, 916
BseRI GAGGAG 2 cut(s) 132, 477
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 1 cut(s) 361
BshFI GGCC 3 cut(s) 206, 786, 915
BshNI GGYRCC 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 1105
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 182, 494
BsmAI GTCTC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 3 cut(s) 206, 786, 915
Bsp1286I GDGCHC 2 cut(s) 485, 1105
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 6 cut(s) 146, 186, 672, 903, 949, 1014
Bsp19I CCATGG 1 cut(s) 916
BspACI CCGC 2 cut(s) 31, 514
BspANI GGCC 3 cut(s) 206, 786, 915
BspCNI CTCAG 2 cut(s) 4, 436
BspEI TCCGGA 1 cut(s) 199
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 3 cut(s) 482, 942, 1024
BspPI GGATC 3 cut(s) 194, 667, 1009
BspT107I GGYRCC 1 cut(s) 480
BsrI ACTGG 3 cut(s) 365, 849, 916
BssECI CCNNGG 2 cut(s) 916, 1018
BssMI GATC 6 cut(s) 146, 186, 672, 903, 949, 1014
BssSI CACGAG 1 cut(s) 535
BssT1I CCWWGG 1 cut(s) 916
Bst2BI CACGAG 1 cut(s) 535
Bst2UI CCWGG 2 cut(s) 208, 732
BstDEI CTNAG 2 cut(s) 12, 423
BstDSI CCRYGG 2 cut(s) 916, 1018
BstF5I GGATG 1 cut(s) 1042
BstKTI GATC 6 cut(s) 149, 189, 675, 906, 952, 1017
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 6 cut(s) 146, 186, 672, 903, 949, 1014
BstNI CCWGG 2 cut(s) 208, 732
BstNSI RCATGY 1 cut(s) 716
BstSCI CCNGG 2 cut(s) 206, 730
BstSLI GKGCMC 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 672
BstYI RGATCY 1 cut(s) 672
BsuRI GGCC 3 cut(s) 206, 786, 915
BtgI CCRYGG 2 cut(s) 916, 1018
BtsCI GGATG 1 cut(s) 1042
CciI TCATGA 1 cut(s) 523
Cfr13I GGNCC 3 cut(s) 74, 838, 940
Csp6I GTAC 4 cut(s) 111, 362, 387, 471
CspCI CAANNNNNGTGG 2 cut(s) 612, 647
CviAII CATG 6 cut(s) 359, 428, 524, 713, 917, 1106
CviQI GTAC 4 cut(s) 111, 362, 387, 471
DdeI CTNAG 2 cut(s) 12, 423
DpnI GATC 6 cut(s) 148, 188, 674, 905, 951, 1016
DpnII GATC 6 cut(s) 146, 186, 672, 903, 949, 1014
DraI TTTAAA 1 cut(s) 981
EaeI YGGCCR 1 cut(s) 913
Eco130I CCWWGG 1 cut(s) 916
Eco47I GGWCC 3 cut(s) 74, 838, 940
EcoO109I RGGNCCY 2 cut(s) 838, 940
EcoRII CCWGG 2 cut(s) 206, 730
EcoT14I CCWWGG 1 cut(s) 916
ErhI CCWWGG 1 cut(s) 916
FaeI CATG 6 cut(s) 362, 431, 527, 716, 920, 1109
FatI CATG 6 cut(s) 358, 427, 523, 712, 916, 1105
Fnu4HI GCNGC 2 cut(s) 375, 514
FokI GGATG 1 cut(s) 1049
Fsp4HI GCNGC 2 cut(s) 375, 514
FspBI CTAG 1 cut(s) 1031
GluI GCNGC 2 cut(s) 375, 514
GsuI CTGGAG 1 cut(s) 623
HaeIII GGCC 3 cut(s) 206, 786, 915
HapII CCGG 1 cut(s) 200
Hin1II CATG 6 cut(s) 362, 431, 527, 716, 920, 1109
HindIII AAGCTT 2 cut(s) 956, 1112
HinfI GANTC 4 cut(s) 39, 454, 690, 896
HpaII CCGG 1 cut(s) 200
HphI GGTGA 3 cut(s) 635, 758, 785
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 7 cut(s) 13, 127, 578, 591, 954, 1027, 1131
Hpy188III TCNNGA 6 cut(s) 53, 164, 200, 524, 670, 947
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 406, 642, 676
HpyCH4V TGCA 7 cut(s) 568, 845, 860, 875, 886, 929, 994
HpyF3I CTNAG 2 cut(s) 12, 423
Hsp92II CATG 6 cut(s) 362, 431, 527, 716, 920, 1109
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 6 cut(s) 146, 186, 672, 903, 949, 1014
LmnI GCTCC 1 cut(s) 1028
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 869
MaeI CTAG 1 cut(s) 1031
MaeIII GTNAC 1 cut(s) 53
MalI GATC 6 cut(s) 148, 188, 674, 905, 951, 1016
MboI GATC 6 cut(s) 146, 186, 672, 903, 949, 1014
MboII GAAGA 6 cut(s) 130, 280, 334, 361, 421, 620
MflI RGATCY 1 cut(s) 672
MhlI GDGCHC 2 cut(s) 485, 1105
MlsI TGGCCA 1 cut(s) 915
MluCI AATT 7 cut(s) 7, 94, 212, 327, 741, 1140, 1156
MluNI TGGCCA 1 cut(s) 915
MlyI GAGTC 1 cut(s) 48
Mox20I TGGCCA 1 cut(s) 915
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 915
MseI TTAA 1 cut(s) 980
MslI CAYNNNNRTG 3 cut(s) 178, 528, 828
Msp20I TGGCCA 1 cut(s) 915
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 208, 732
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 2 cut(s) 208, 732
NcoI CCATGG 1 cut(s) 916
NdeII GATC 6 cut(s) 146, 186, 672, 903, 949, 1014
NlaIII CATG 6 cut(s) 362, 431, 527, 716, 920, 1109
NlaIV GGNNCC 3 cut(s) 482, 942, 1024
NmuCI GTSAC 1 cut(s) 53
NspI RCATGY 1 cut(s) 716
PagI TCATGA 1 cut(s) 523
PciI ACATGT 1 cut(s) 712
PctI GAATGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 454, 690, 896
PfoI TCCNGGA 1 cut(s) 730
PkrI GCNGC 2 cut(s) 376, 515
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PpuMI RGGWCCY 2 cut(s) 838, 940
PscI ACATGT 1 cut(s) 712
PsiI TTATAA 1 cut(s) 243
Psp5II RGGWCCY 2 cut(s) 838, 940
Psp6I CCWGG 2 cut(s) 206, 730
PspGI CCWGG 2 cut(s) 206, 730
PspN4I GGNNCC 3 cut(s) 482, 942, 1024
PspPI GGNCC 3 cut(s) 74, 838, 940
PspPPI RGGWCCY 2 cut(s) 838, 940
PsrI GAACNNNNNNTAC 2 cut(s) 144, 176
PsuI RGATCY 1 cut(s) 672
RsaI GTAC 4 cut(s) 112, 363, 388, 472
RsaNI GTAC 4 cut(s) 111, 362, 387, 471
RseI CAYNNNNRTG 3 cut(s) 178, 528, 828
SaqAI TTAA 1 cut(s) 980
SatI GCNGC 2 cut(s) 375, 514
Sau3AI GATC 6 cut(s) 146, 186, 672, 903, 949, 1014
Sau96I GGNCC 3 cut(s) 74, 838, 940
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 208, 732
SduI GDGCHC 2 cut(s) 485, 1105
SfaNI GCATC 1 cut(s) 869
SinI GGWCC 3 cut(s) 74, 838, 940
SmiMI CAYNNNNRTG 3 cut(s) 178, 528, 828
SmlI CTYRAG 3 cut(s) 88, 677, 945
SmoI CTYRAG 3 cut(s) 88, 677, 945
SpeI ACTAGT 1 cut(s) 1030
Sse9I AATT 7 cut(s) 7, 94, 212, 327, 741, 1140, 1156
SsiI CCGC 2 cut(s) 31, 514
SspMI CTAG 1 cut(s) 1031
StyD4I CCNGG 2 cut(s) 206, 730
StyI CCWWGG 1 cut(s) 916
TaqI TCGA 1 cut(s) 145
TasI AATT 7 cut(s) 7, 94, 212, 327, 741, 1140, 1156
TatI WGTACW 1 cut(s) 470
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 3 cut(s) 454, 690, 896
Tru1I TTAA 1 cut(s) 980
Tru9I TTAA 1 cut(s) 980
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 5 cut(s) 447, 597, 746, 888, 1148
TspGWI ACGGA 2 cut(s) 481, 1007
VpaK11BI GGWCC 3 cut(s) 74, 838, 940
XapI RAATTY 2 cut(s) 7, 212
XceI RCATGY 1 cut(s) 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 803
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.