Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Reverse (-)

39729728 .. 39733774

Gene Structure 4047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1279700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3213 bp

ATGGGGGTCGTTGAAGCGATGCAACATTCGGAATCTTCGAGGCGAATTGCTTCACTTAATGGTAGTCATTCTGAGGGGAGATTGGGACGATCCATGGAAAATGGAGAGTGCTCTTTCCGTGCTCCTAACTTAAAGAGGCGTACAGTCTCTGCGGTCCGTGATTTTCCCCTGGGGTGCGGACGGTTTGGTCAGTTAAGGGAAAATTTGAGACGACATGAAGGGGCTGCTTCTGGGGGAAATTTTGACAGTGTACCAACAGAAAATTTGGTTAGTAGGGGTGAAAATGGCGATGCACGTGGGGTTGACAAGCTCGGGCGCTCAAATGTTCATGTGGATGAGACTGACTTGATGAATGGTAAGGATGTGGGTACTGTGGAGAGAATTGAATCAGTGGCAACCTTAGAGCATGAAATTTCTGATTTGCCAAATGACCAACATGGGTTAAACAATTGGAGACCGGTTGAAGAGGCAGCTTCTGTTGTTGCTGCTGAGGCTTTGATTAGCGGGGGTAACGACGATGATGAACAAGGGATTGAAGTGCGAATGGTACCTGCTGGTTCGATCAATGAGACTGCATTGACTAATGGTAAGGCTTTTGGTACTGTGGAGACAGTGGATTTAAATGCATTGCTGAATGAAATATCTGATTCGTTGAAGGACCCACTTCAGCTTGGTGTGGCTACACCAAATGAAGATATGTCTTCTGTTATGCCTGATTCACCACCCAATGGATCCATCTCCATTTCTAGTGGAAATGGTCTGGAGAAGACTGCAGTTAAAAAATATCCTCCTCGAAGAGTAGTATCAGCCATTCGGGACTTCCCTCCTCTTTGTGGAAGAAACCCTGCCCTGGAGGCGAGGAATTTTGGTCAAGAGAGGTCCGCTATGGATGGCGAACCATCATCATTGAACACAGCGAAGACTACTGTGAGACAAACAGGTGAGGATGTTCAAGATAGAGAGTTTCACAAGAGTGAAAATGGAGGGGATATTTCTCTACTAATTGGGGACAAGGTTCAACCAAAAAGCAAGGGACATGCTGTACAAGAATTGGAAAGGCACCATGATGTAAATTATGAGATGAACGTGGTTTCAGAAGATGCTAAAAAAATTTACCATGAACTTTCTCAAGGACGCTATATATTCCAAGGCACGGGGAGTGTTGAACATTCAGAGGAGAAAGTGGGGATGGAGATGGTGGTATACCATGGAAAGGAAAGTCCAAGCGAGACAGACTTAGGTAAACCTTATTATCATAATCAATTGCACGAAGAAGATTTTGTAAGATCGGAAATTACGTCGGAAAAAGCGGTTGTAATGGGTTTGATGACTGCGTCAAACTGTCCATGGAGGATGGGAAAAGTGGTTGACCTACATAAACTAGAAGGTGGAAGTAGCGAAAGAAAACGAAAGAAGCTTGATGTGAAATGTCAGATAGAAAGGTCTAAGGCTATTTCCAGGAAAAAAGATGACTCGGACATTGGAGGAAAGTCTCCAAAGAATATTCTTCCTATATCACAAATGAGTGCTTATGAAGGTACACGTCAGCTTGTTGTCTGGGACAAGAAGGAGTATTCTCTTGAGCTTGACCAGAAAGAAGACTTTTATGTGAGTCCAAGATCAGGTTGTTCTGATGTATGTCCTCCTCCTTTTGGTACTAGTAGTTCAACTAGCAAAGTTCGTGATAATACCCGAAACACGGTGAGGGAGACATTGCGTCTGTTCCAAGCTCTCTGTAGGAAGCTCTTGCGGGAGGAAGAGGGTAAGTCAAAGGAAGGAGGAGTTCCTCGCAAAAGGGTTGATTATTCAGCTGCAAAGATCCTCAAGGATAAAGGAAAATATGTAAATACGGGCAAACAAATCTTGGGAACTGTGCCGGGAGTTGAAGTTGGCGATGAGTTTCATTACAGAGTGGAACTTACTATTGTTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATGTAAAGCATGGTGGGAAGATCCTTGCAACCAGTATCGTTGCATCTGGTGGCTATGCAGATGATTTGGATAATTCAAGTTCCTTGATTTATACAGGCCAAGGAGGAAATGTGATGAATACTGATAAGGAACCTGAAGATCAGAAGCTTGAACGGGGAAACCTTGCTTTAAAGAATAGTCTGGATGAAAAAAATCCTGTTAGAGTGATCCGTGGCTCTGAAGATGGAAGAAGTAAGACATATGTTTATGATGGACTATATTTGGTAGAGAAATGTTGGCAGGATATGGGGTCTCATGGTAAGCTTGTTTTCAAGTTTCAACTTGACAGAGTCCGAGATCAACCAGAGCTTGCTTGGAAAGAAGTGAAGAAGTCCAAAAAATATAAAGTACGGGAAGGTCTATGCATTGATGATATTTCAGGAGGGAAAGAGTCCATTCCTGTCTGTGCTGTGAATACCATAGATGATGAGAAACCTCCAACATTTGTATACATAACTAGCATGATATATCCAGATTGGTGCCGCCCAGTTCCTCCCAAGGGTTGTACCTGTATTGTTGAATGCTCAGATTCTGAGAAATGTTCTTGTGCAGTTGAGAACGGAGGTGAGATCCCATATAACTTCAATGGTGCTATTGTTGAAGCAAAGTCCCTTGTGTATGAGTGTGGTCCTTCTTGTAAGTGTCCTCCTTCTTGTTACAATAGAGTTAGTCAGCGTGGTATCAAATTTCAGCTTGAAATCTTCAAAACTGAATCGAGGGGTTGGGGAGTGAGATCCCTAAATTCCATTCCTTCGGGAAGTTTTATATGTGAGTATATAGGAGAGCTCCTGGAAGAGAAGGAAGCTGAAGAAAGAACTGGGAATGATGAGTATCTGTTTGATATTGGGAATAACTACAGCGACAATTCTCTTTGGGATGGACTTTCAATCCTCATGCCCGATGCACAATCAAGTTCTCATGGAGTTGTGGGGGAAGGTGGATTCACCATTGATGCAGTAGAGTACGGCAATGTGGGAAGATTTATCAACCATAGTTGTTCTCCTAATCTTTATGCCCAAAATGTCCTCTATGATCATGATGACACTAGAATTCCTCACATCATGTTCTTTGCTGCTGAGAACATTCCTCCTTTGCAAGAGTTGACCTATCATTACAATTATATGATAGACCAGGTTCGTGATTCTAATGGCAAGATAAAGAAGAAGAGTTGCTATTGTGGTTCTCCAGAGTGCACTGGCAGACTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

1071

Amino Acids

118.39

Weight (kDa)

5.59

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	622 - 768	9e-55	SAD/SRA domain
Pre-SET	PF05033	795 - 889	1.5e-21	Pre-SET motif
SET	PF00856	908 - 1040	1.3e-22	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	559
Acc65I	GGTACC	1 cut(s)	547
AccB1I	GGYRCC	3 cut(s)	547, 1059, 2481
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccI	GTMKAC	2 cut(s)	1203, 2451
AciI	CCGC	7 cut(s)	152, 177, 504, 882, 1310, 1750, 2485
AclWI	GGATC	8 cut(s)	84, 726, 739, 1813, 1978, 2164, 2566, 2730
AcsI	RAATTY	9 cut(s)	202, 238, 262, 411, 862, 1110, 2687, 2743, 3051
AcuI	CTGAAG	4 cut(s)	650, 2118, 2202, 2829
AcvI	CACGTG	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	1541
AgeI	ACCGGT	1 cut(s)	457
AhdI	GACNNNNNGTC	1 cut(s)	1716
AhlI	ACTAGT	1 cut(s)	1658
AjiI	CACGTC	1 cut(s)	1544
AjnI	CCWGG	5 cut(s)	168, 849, 1457, 2790, 3132
AleI	CACNNNNGTG	1 cut(s)	972
Alw21I	GWGCWC	4 cut(s)	113, 124, 2790, 3197
Alw44I	GTGCAC	1 cut(s)	3193
AlwI	GGATC	8 cut(s)	84, 726, 739, 1813, 1978, 2164, 2566, 2730
AlwNI	CAGNNNCTG	3 cut(s)	149, 476, 2534
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	1930, 2059
ApaLI	GTGCAC	1 cut(s)	3193
ApeKI	GCWGC	5 cut(s)	224, 470, 485, 1811, 3074
ApoI	RAATTY	9 cut(s)	202, 238, 262, 411, 862, 1110, 2687, 2743, 3051
AsiGI	ACCGGT	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	49
Asp718I	GGTACC	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	4 cut(s)	154, 658, 879, 2630
AsuC2I	CCSGG	1 cut(s)	1878
AsuHPI	GGTGA	6 cut(s)	290, 711, 953, 1714, 2579, 2938
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	4 cut(s)	154, 658, 879, 2630
BaeGI	GKGCMC	1 cut(s)	3197
BamHI	GGATCC	1 cut(s)	731
BanI	GGYRCC	3 cut(s)	547, 1059, 2481
BanII	GRGCYC	1 cut(s)	2790
BbrPI	CACGTG	1 cut(s)	296
BbsI	GAAGAC	4 cut(s)	693, 773, 926, 1605
Bbv12I	GWGCWC	4 cut(s)	113, 124, 2790, 3197
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	5 cut(s)	211, 472, 482, 1798, 3061
BccI	CCATC	9 cut(s)	743, 884, 907, 1183, 1189, 1348, 2180, 2207, 2873
BceAI	ACGGC	1 cut(s)	2983
BciT130I	CCWGG	5 cut(s)	170, 851, 1459, 2792, 3134
BclI	TGATCA	1 cut(s)	3034
BcnI	CCSGG	1 cut(s)	1878
BcuI	ACTAGT	1 cut(s)	1658
BfaI	CTAG	6 cut(s)	747, 1382, 1659, 1671, 2460, 3048
BfmI	CTRYAG	3 cut(s)	771, 1735, 2857
BfoI	RGCGCY	1 cut(s)	319
BfuAI	ACCTGC	1 cut(s)	559
BglI	GCCNNNNNGGC	1 cut(s)	854
BisI	GCNGC	6 cut(s)	225, 471, 486, 1812, 2485, 3075
BlsI	GCNGC	6 cut(s)	226, 472, 487, 1813, 2486, 3076
Bme1390I	CCNGG	6 cut(s)	170, 851, 1459, 1878, 2792, 3134
Bme18I	GGWCC	4 cut(s)	154, 658, 879, 2630
BmeRI	GACNNNNNGTC	1 cut(s)	1716
BmeT110I	CYCGRG	1 cut(s)	311
BmgBI	CACGTC	1 cut(s)	1544
BmgT120I	GGNCC	4 cut(s)	154, 658, 879, 2630
BmiI	GGNNCC	6 cut(s)	549, 660, 733, 1061, 2094, 2483
BmrFI	CCNGG	6 cut(s)	170, 851, 1459, 1878, 2792, 3134
BmrI	ACTGGG	2 cut(s)	2483, 2829
BmsI	GCATC	6 cut(s)	9, 280, 1090, 2015, 2893, 2944
BmuI	ACTGGG	2 cut(s)	2483, 2829
BpiI	GAAGAC	4 cut(s)	693, 773, 926, 1605
BpmI	CTGGAG	3 cut(s)	782, 872, 3171
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	3 cut(s)	1113, 1601, 1808
BpuMI	CCSGG	1 cut(s)	1878
BsaAI	YACGTR	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	2832
BsaI	GGTCTC	2 cut(s)	448, 2259
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	4 cut(s)	1872, 1902, 2058, 2088
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	4 cut(s)	1995, 2489, 2824, 3202
Bse3DI	GCAATG	3 cut(s)	626, 1712, 2977
Bse8I	GATNNNNATC	1 cut(s)	2832
BseBI	CCWGG	5 cut(s)	170, 851, 1459, 2792, 3134
BseGI	GGATG	8 cut(s)	340, 367, 895, 952, 1194, 1359, 2152, 2884
BseJI	GATNNNNATC	1 cut(s)	2832
BseMI	GCAATG	3 cut(s)	626, 1712, 2977
BseMII	CTCAG	5 cut(s)	63, 480, 2526, 2541, 3069
BseNI	ACTGG	4 cut(s)	1995, 2489, 2824, 3202
BseRI	GAGGAG	5 cut(s)	780, 816, 1190, 1635, 1794
BseSI	GKGCMC	1 cut(s)	3197
BseXI	GCAGC	5 cut(s)	211, 472, 482, 1798, 3061
BsgI	GTGCAG	1 cut(s)	2571
BshFI	GGCC	2 cut(s)	1932, 2061
BshNI	GGYRCC	3 cut(s)	547, 1059, 2481
BshTI	ACCGGT	1 cut(s)	457
BsiHKAI	GWGCWC	4 cut(s)	113, 124, 2790, 3197
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	458, 1877
BslFI	GGGAC	6 cut(s)	99, 830, 1022, 1047, 1574, 2596
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	6 cut(s)	99, 830, 1022, 1047, 1574, 2596
BsmI	GAATGC	1 cut(s)	2528
BsnI	GGCC	2 cut(s)	1932, 2061
Bso31I	GGTCTC	2 cut(s)	448, 2259
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	4 cut(s)	113, 124, 2790, 3197
Bsp1407I	TGTACA	1 cut(s)	1042
Bsp19I	CCATGG	3 cut(s)	93, 1207, 1346
BspACI	CCGC	7 cut(s)	152, 177, 504, 882, 1310, 1750, 2485
BspANI	GGCC	2 cut(s)	1932, 2061
BspCNI	CTCAG	5 cut(s)	64, 481, 2527, 2540, 3070
BspHI	TCATGA	1 cut(s)	3037
BspLI	GGNNCC	6 cut(s)	549, 660, 733, 1061, 2094, 2483
BspMAI	CTGCAG	1 cut(s)	775
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	8 cut(s)	84, 726, 739, 1813, 1978, 2164, 2566, 2730
BspT107I	GGYRCC	3 cut(s)	547, 1059, 2481
BspTNI	GGTCTC	2 cut(s)	448, 2259
BsrDI	GCAATG	3 cut(s)	626, 1712, 2977
BsrFI	RCCGGY	1 cut(s)	457
BsrGI	TGTACA	1 cut(s)	1042
BsrI	ACTGG	4 cut(s)	1995, 2489, 2824, 3202
BssAI	RCCGGY	1 cut(s)	457
BssNAI	GTATAC	2 cut(s)	1204, 2452
BssT1I	CCWWGG	6 cut(s)	93, 1147, 1207, 1346, 2062, 2499
Bst1107I	GTATAC	2 cut(s)	1204, 2452
Bst2UI	CCWGG	5 cut(s)	170, 851, 1459, 2792, 3134
Bst6I	CTCTTC	5 cut(s)	459, 790, 1752, 2790, 3161
BstAUI	TGTACA	1 cut(s)	1042
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	2313
BstDEI	CTNAG	8 cut(s)	72, 400, 489, 1237, 1446, 2527, 2535, 3078
BstDSI	CCRYGG	4 cut(s)	93, 1207, 1346, 2173
BstF5I	GGATG	8 cut(s)	340, 367, 895, 952, 1194, 1359, 2152, 2884
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 854, 1938
BstNI	CCWGG	5 cut(s)	170, 851, 1459, 2792, 3134
BstNSI	RCATGY	1 cut(s)	1040
BstSCI	CCNGG	6 cut(s)	168, 849, 1457, 1876, 2790, 3132
BstSFI	CTRYAG	3 cut(s)	771, 1735, 2857
BstSLI	GKGCMC	1 cut(s)	3197
BstV1I	GCAGC	5 cut(s)	211, 472, 482, 1798, 3061
BstV2I	GAAGAC	4 cut(s)	693, 773, 926, 1605
BstX2I	RGATCY	5 cut(s)	731, 1818, 1983, 2571, 2735
BstYI	RGATCY	5 cut(s)	731, 1818, 1983, 2571, 2735
BstZ17I	GTATAC	2 cut(s)	1204, 2452
BsuRI	GGCC	2 cut(s)	1932, 2061
BtgI	CCRYGG	4 cut(s)	93, 1207, 1346, 2173
BtgZI	GCGATG	4 cut(s)	32, 303, 1908, 1922
BtrI	CACGTC	1 cut(s)	1544
BtsCI	GGATG	8 cut(s)	340, 367, 895, 952, 1194, 1359, 2152, 2884
BtsIMutI	CAGTG	4 cut(s)	253, 396, 618, 3195
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	2313
CaiI	CAGNNNCTG	3 cut(s)	149, 476, 2534
CciI	TCATGA	1 cut(s)	3037
CfoI	GCGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	4 cut(s)	154, 658, 879, 2630
CpoI	CGGWCCG	1 cut(s)	154
CseI	GACGC	3 cut(s)	1143, 1323, 1706
CsiI	ACCWGGT	1 cut(s)	3132
CspAI	ACCGGT	1 cut(s)	457
CspI	CGGWCCG	1 cut(s)	154
DdeI	CTNAG	8 cut(s)	72, 400, 489, 1237, 1446, 2527, 2535, 3078
DraI	TTTAAA	2 cut(s)	621, 2133
DrdI	GACNNNNNNGTC	1 cut(s)	186
DriI	GACNNNNNGTC	1 cut(s)	1716
DseDI	GACNNNNNNGTC	1 cut(s)	186
Eam1104I	CTCTTC	5 cut(s)	459, 790, 1752, 2790, 3161
Eam1105I	GACNNNNNGTC	1 cut(s)	1716
EarI	CTCTTC	5 cut(s)	459, 790, 1752, 2790, 3161
Ecl136II	GAGCTC	1 cut(s)	2788
Eco130I	CCWWGG	6 cut(s)	93, 1147, 1207, 1346, 2062, 2499
Eco24I	GRGCYC	1 cut(s)	2790
Eco31I	GGTCTC	2 cut(s)	448, 2259
Eco47I	GGWCC	4 cut(s)	154, 658, 879, 2630
Eco53kI	GAGCTC	1 cut(s)	2788
Eco57I	CTGAAG	4 cut(s)	650, 2118, 2202, 2829
Eco72I	CACGTG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	2788
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRI	GAATTC	1 cut(s)	3051
EcoRII	CCWGG	5 cut(s)	168, 849, 1457, 2790, 3132
EcoT14I	CCWWGG	6 cut(s)	93, 1147, 1207, 1346, 2062, 2499
EcoT22I	ATGCAT	2 cut(s)	628, 2369
EcoT38I	GRGCYC	1 cut(s)	2790
ErhI	CCWWGG	6 cut(s)	93, 1147, 1207, 1346, 2062, 2499
Esp3I	CGTCTC	1 cut(s)	202
FaqI	GGGAC	6 cut(s)	99, 830, 1022, 1047, 1574, 2596
FauI	CCCGC	2 cut(s)	497, 1743
FauNDI	CATATG	1 cut(s)	2203
FbaI	TGATCA	1 cut(s)	3034
FblI	GTMKAC	2 cut(s)	1203, 2451
Fnu4HI	GCNGC	6 cut(s)	225, 471, 486, 1812, 2485, 3075
FokI	GGATG	8 cut(s)	347, 374, 902, 959, 1201, 1366, 2159, 2891
FriOI	GRGCYC	1 cut(s)	2790
Fsp4HI	GCNGC	6 cut(s)	225, 471, 486, 1812, 2485, 3075
FspBI	CTAG	6 cut(s)	747, 1382, 1659, 1671, 2460, 3048
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	6 cut(s)	225, 471, 486, 1812, 2485, 3075
GsuI	CTGGAG	3 cut(s)	782, 872, 3171
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	1932, 2061
HapII	CCGG	2 cut(s)	458, 1877
HgaI	GACGC	3 cut(s)	1143, 1323, 1706
HhaI	GCGC	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	3 cut(s)	304, 1369, 3105
HindII	GTYRAC	3 cut(s)	304, 1369, 3105
HindIII	AAGCTT	3 cut(s)	1415, 2108, 2264
HpaII	CCGG	2 cut(s)	458, 1877
HphI	GGTGA	6 cut(s)	290, 711, 953, 1714, 2579, 2938
Hpy166II	GTNNAC	9 cut(s)	251, 304, 1204, 1244, 1369, 1541, 2452, 3105, 3195
Hpy8I	GTNNAC	9 cut(s)	251, 304, 1204, 1244, 1369, 1541, 2452, 3105, 3195
Hpy99I	CGWCG	2 cut(s)	518, 1303
HpyCH4IV	ACGT	4 cut(s)	295, 1086, 1298, 1543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 854, 1938
HpyF3I	CTNAG	8 cut(s)	72, 400, 489, 1237, 1446, 2527, 2535, 3078
HpySE526I	ACGT	4 cut(s)	295, 1086, 1298, 1543
HspAI	GCGC	1 cut(s)	316
KpnI	GGTACC	1 cut(s)	551
Ksp22I	TGATCA	1 cut(s)	3034
LmnI	GCTCC	2 cut(s)	127, 2793
Lsp1109I	GCAGC	5 cut(s)	211, 472, 482, 1798, 3061
LweI	GCATC	6 cut(s)	9, 280, 1090, 2015, 2893, 2944
MabI	ACCWGGT	1 cut(s)	3132
MaeI	CTAG	6 cut(s)	747, 1382, 1659, 1671, 2460, 3048
MaeII	ACGT	4 cut(s)	295, 1086, 1298, 1543
MaeIII	GTNAC	2 cut(s)	509, 2657
MfeI	CAATTG	2 cut(s)	448, 1262
MflI	RGATCY	5 cut(s)	731, 1818, 1983, 2571, 2735
MhlI	GDGCHC	4 cut(s)	113, 124, 2790, 3197
MlyI	GAGTC	4 cut(s)	1466, 1621, 2301, 2402
MmeI	TCCRAC	2 cut(s)	1281, 2465
Mph1103I	ATGCAT	2 cut(s)	628, 2369
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	7 cut(s)	57, 131, 194, 443, 620, 777, 2132
MslI	CAYNNNNRTG	3 cut(s)	333, 972, 1065
MspA1I	CMGCKG	1 cut(s)	1811
MspI	CCGG	2 cut(s)	458, 1877
MspR9I	CCNGG	6 cut(s)	170, 851, 1459, 1878, 2792, 3134
MunI	CAATTG	2 cut(s)	448, 1262
Mva1269I	GAATGC	1 cut(s)	2528
MvaI	CCWGG	5 cut(s)	170, 851, 1459, 2792, 3134
MwoI	GCNNNNNNNGC	3 cut(s)	491, 854, 1938
NciI	CCSGG	1 cut(s)	1878
NcoI	CCATGG	3 cut(s)	93, 1207, 1346
NdeI	CATATG	1 cut(s)	2203
NlaIV	GGNNCC	6 cut(s)	549, 660, 733, 1061, 2094, 2483
NsiI	ATGCAT	2 cut(s)	628, 2369
NspI	RCATGY	1 cut(s)	1040
OliI	CACNNNNGTG	1 cut(s)	972
PagI	TCATGA	1 cut(s)	3037
PasI	CCCWGGG	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 1295
PctI	GAATGC	1 cut(s)	2528
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	9 cut(s)	32, 386, 647, 716, 1945, 2531, 2714, 2943, 3143
PflFI	GACNNNGTC	2 cut(s)	1333, 2291
PflMI	CCANNNNNTGG	1 cut(s)	728
PfoI	TCCNGGA	2 cut(s)	1457, 2790
PinAI	ACCGGT	1 cut(s)	457
PkrI	GCNGC	6 cut(s)	226, 472, 487, 1813, 2486, 3076
PleI	GAGTC	4 cut(s)	1466, 1620, 2300, 2401
PmaCI	CACGTG	1 cut(s)	296
PmlI	CACGTG	1 cut(s)	296
PpsI	GAGTC	4 cut(s)	1466, 1620, 2300, 2401
Ppu21I	YACGTR	1 cut(s)	296
PpuMI	RGGWCCY	1 cut(s)	658
Psp124BI	GAGCTC	1 cut(s)	2790
Psp5II	RGGWCCY	1 cut(s)	658
Psp6I	CCWGG	5 cut(s)	168, 849, 1457, 2790, 3132
PspCI	CACGTG	1 cut(s)	296
PspGI	CCWGG	5 cut(s)	168, 849, 1457, 2790, 3132
PspN4I	GGNNCC	6 cut(s)	549, 660, 733, 1061, 2094, 2483
PspPI	GGNCC	4 cut(s)	154, 658, 879, 2630
PspPPI	RGGWCCY	1 cut(s)	658
PsrI	GAACNNNNNNTAC	2 cut(s)	1648, 1680
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	3 cut(s)	149, 476, 2534
PsuI	RGATCY	5 cut(s)	731, 1818, 1983, 2571, 2735
PsyI	GACNNNGTC	2 cut(s)	1333, 2291
PvuII	CAGCTG	1 cut(s)	1811
RseI	CAYNNNNRTG	3 cut(s)	333, 972, 1065
Rsr2I	CGGWCCG	1 cut(s)	154
RsrII	CGGWCCG	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	2790
SaqAI	TTAA	7 cut(s)	57, 131, 194, 443, 620, 777, 2132
SatI	GCNGC	6 cut(s)	225, 471, 486, 1812, 2485, 3075
Sau96I	GGNCC	4 cut(s)	154, 658, 879, 2630
SchI	GAGTC	4 cut(s)	1466, 1621, 2301, 2402
ScrFI	CCNGG	6 cut(s)	170, 851, 1459, 1878, 2792, 3134
SduI	GDGCHC	4 cut(s)	113, 124, 2790, 3197
SexAI	ACCWGGT	1 cut(s)	3132
SfaNI	GCATC	6 cut(s)	9, 280, 1090, 2015, 2893, 2944
SfcI	CTRYAG	3 cut(s)	771, 1735, 2857
SinI	GGWCC	4 cut(s)	154, 658, 879, 2630
SmiI	ATTTAAAT	1 cut(s)	621
SmiMI	CAYNNNNRTG	3 cut(s)	333, 972, 1065
SmlI	CTYRAG	3 cut(s)	1128, 1580, 1823
SmoI	CTYRAG	3 cut(s)	1128, 1580, 1823
SpeI	ACTAGT	1 cut(s)	1658
SsiI	CCGC	7 cut(s)	152, 177, 504, 882, 1310, 1750, 2485
SspI	AATATT	1 cut(s)	1504
SspMI	CTAG	6 cut(s)	747, 1382, 1659, 1671, 2460, 3048
SstI	GAGCTC	1 cut(s)	2790
StyD4I	CCNGG	6 cut(s)	168, 849, 1457, 1876, 2790, 3132
StyI	CCWWGG	6 cut(s)	93, 1147, 1207, 1346, 2062, 2499
SwaI	ATTTAAAT	1 cut(s)	621
TaiI	ACGT	4 cut(s)	298, 1089, 1301, 1546
TaqI	TCGA	4 cut(s)	38, 560, 793, 2717
TatI	WGTACW	1 cut(s)	1042
TauI	GCSGC	1 cut(s)	2487
TfiI	GAWTC	9 cut(s)	32, 386, 647, 716, 1945, 2531, 2714, 2943, 3143
Tru1I	TTAA	7 cut(s)	57, 131, 194, 443, 620, 777, 2132
Tru9I	TTAA	7 cut(s)	57, 131, 194, 443, 620, 777, 2132
TscAI	CASTG	4 cut(s)	253, 396, 618, 3202
TseI	GCWGC	5 cut(s)	224, 470, 485, 1811, 3074
TspGWI	ACGGA	4 cut(s)	107, 146, 2162, 2577
TspRI	CASTG	4 cut(s)	253, 396, 618, 3202
Tth111I	GACNNNGTC	2 cut(s)	1333, 2291
Van91I	CCANNNNNTGG	1 cut(s)	728
VneI	GTGCAC	1 cut(s)	3193
VpaK11BI	GGWCC	4 cut(s)	154, 658, 879, 2630
XapI	RAATTY	9 cut(s)	202, 238, 262, 411, 862, 1110, 2687, 2743, 3051
XceI	RCATGY	1 cut(s)	1040
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1949, 2313
XmiI	GTMKAC	2 cut(s)	1203, 2451
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	6 cut(s)	747, 1382, 1659, 1671, 2460, 3048
Zsp2I	ATGCAT	2 cut(s)	628, 2369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.