Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Reverse (-)

21644870 .. 21647005

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGAGCCCAGTCCAGGCGTGTTGACATAGATAAAACCCCACATTTTACTGACTTTGGGATCATTACAACGCTGAGAGAGGCTACTAGTGCTAAATCCTCTCTCGCTTTAGGCATCCTGGTTTCTCTGCAATTTGGAATTTCATTGCATTGGGTTGTGAATAAAAGAATGGTGGTTGTAGAGGCAGTGCAGTTTTTGGCATCATCAAAAGAAAATATGTCACCAACTGCTACCCCTTCTCATGAAAAATTGGGAAGAATTCCCATGGAGTATGGGCTGTGTTTTTCCCATACCAAGTCATTTGAGTGTAAGAGGCGTAGAGTATGTGCTGTTCGTGATTTTCCTTTAGGGTGTGGACTAAATGCTCAGTTAGGGACTTTTAGACCTGTCAATGAGGTGGCTTCTGTAGGTACTCTAAAGGAAGAGATGGCTACTACTGTTCTGTTAGACAGAAACTGCTTTTCACCACCTGATGATGGGTCCAACTCCGTTTCTAATAAAAATGGTCCAGAAAAGATTCCAGAAAAAAAGTATCAACGGGTAGTAGAAGCTGTCCGGGACTCTCCTCCATTCTGTGGAATAAATACTTATCGGGAGGCCAGGACATTGGTTCAAAAGAAGTCAGCTATGGATCACAAATCATCATCATCAAACACAGCAAATACTGATGTCAAACAAATGGGAATCGGGGACAGAGTTGAACCTAAAACTGAGAAACAGAATCACAGGAAAAAGCCTTTTGATATATCCCATTATCCCAATCATCTGCATGAACAAGATTTTGAAAGCTCGCGACTTACGATCAATAAGGTGGTTGTGTTGGGCTTGATGGCTTCATCAAATTGTCCATGGAAGAAAGGACGCAAGCACAAATCAGACAGTGGTATGATTGAAAGGAGAGGAAAATGTCAGCTAGAAAGATCTAATGTAGCTTGCATAGAAAAAGATGAATCAGAGATTGAAGGAATATATCTAAAGAACAATCGTCCTGTAGCAGTAAAGAGTGCTCGTCAAGGTACAGGTGGGCTTGTTATGAGGGATGAAGAGTATTTCCTTGAGGATGATGAAAAACAACATGATCATGTGTTTGCAGCTTCATGCCATACGGATGGGTGTCCTCCTCTTTTGGTCCTAGTAGTTCAAGCAGCAAAAGTCATGATAATGACACAAGTGTCAGAAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

396

Amino Acids

44.05

Weight (kDa)

8.93

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1171
AccB7I	CCANNNNNTGG	1 cut(s)	575
AccII	CGCG	1 cut(s)	793
AclWI	GGATC	2 cut(s)	68, 639
AcsI	RAATTY	2 cut(s)	138, 258
AfaI	GTAC	2 cut(s)	412, 1018
AfiI	CCNNNNNNNGG	3 cut(s)	15, 476, 575
AgsI	TTSAA	6 cut(s)	614, 701, 785, 893, 962, 1142
AhlI	ACTAGT	1 cut(s)	86
AjnI	CCWGG	3 cut(s)	14, 117, 599
AluBI	AGCT	6 cut(s)	551, 626, 789, 913, 932, 1094
AluI	AGCT	6 cut(s)	551, 626, 789, 913, 932, 1094
Alw21I	GWGCWC	1 cut(s)	1009
AlwI	GGATC	2 cut(s)	68, 639
AlwNI	CAGNNNCTG	1 cut(s)	456
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	2 cut(s)	1091, 1145
ApoI	RAATTY	2 cut(s)	138, 258
Asp700I	GAANNNNTTC	1 cut(s)	516
AspS9I	GGNCC	3 cut(s)	480, 506, 1129
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	213, 456
AvaII	GGWCC	3 cut(s)	480, 506, 1129
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	1009
BbvI	GCAGC	2 cut(s)	1103, 1157
BccI	CCATC	4 cut(s)	421, 470, 823, 1103
BciT130I	CCWGG	3 cut(s)	16, 119, 601
BclI	TGATCA	1 cut(s)	1078
BcnI	CCSGG	1 cut(s)	557
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	3 cut(s)	87, 914, 1133
BfmI	CTRYAG	2 cut(s)	405, 990
BglII	AGATCT	1 cut(s)	920
BisI	GCNGC	2 cut(s)	1092, 1146
BlsI	GCNGC	2 cut(s)	1093, 1147
Bme1390I	CCNGG	4 cut(s)	16, 119, 557, 601
Bme18I	GGWCC	3 cut(s)	480, 506, 1129
BmgT120I	GGNCC	3 cut(s)	480, 506, 1129
BmiI	GGNNCC	2 cut(s)	7, 481
BmrFI	CCNGG	4 cut(s)	16, 119, 557, 601
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	2 cut(s)	123, 209
BmuI	ACTGGG	1 cut(s)	4
BpuEI	CTTGAG	1 cut(s)	1076
BpuMI	CCSGG	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	264, 848
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 476, 575
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	143
BseBI	CCWGG	3 cut(s)	16, 119, 601
BseDI	CCNNGG	2 cut(s)	264, 848
BseGI	GGATG	4 cut(s)	114, 1045, 1066, 1114
BseLI	CCNNNNNNNGG	3 cut(s)	15, 476, 575
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	3 cut(s)	65, 380, 702
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	2 cut(s)	555, 1110
BseXI	GCAGC	2 cut(s)	1103, 1157
BsgI	GTGCAG	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	793
BshFI	GGCC	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	1009
BsiSI	CCGG	1 cut(s)	556
BslFI	GGGAC	3 cut(s)	388, 572, 704
BslI	CCNNNNNNNGG	3 cut(s)	15, 476, 575
BsmFI	GGGAC	3 cut(s)	388, 572, 704
BsnI	GGCC	1 cut(s)	599
Bsp1286I	GDGCHC	2 cut(s)	10, 1009
Bsp143I	GATC	5 cut(s)	60, 631, 801, 920, 1078
Bsp19I	CCATGG	2 cut(s)	264, 848
Bsp68I	TCGCGA	1 cut(s)	793
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	3 cut(s)	66, 379, 703
BspFNI	CGCG	1 cut(s)	793
BspHI	TCATGA	2 cut(s)	241, 1155
BspLI	GGNNCC	2 cut(s)	7, 481
BspPI	GGATC	2 cut(s)	68, 639
BsrDI	GCAATG	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	264, 848
BssMI	GATC	5 cut(s)	60, 631, 801, 920, 1078
BssT1I	CCWWGG	2 cut(s)	264, 848
Bst2UI	CCWGG	3 cut(s)	16, 119, 601
Bst4CI	ACNGT	2 cut(s)	439, 881
Bst6I	CTCTTC	2 cut(s)	417, 1038
BstC8I	GCNNGC	3 cut(s)	791, 866, 934
BstDEI	CTNAG	3 cut(s)	74, 366, 711
BstDSI	CCRYGG	2 cut(s)	264, 848
BstF5I	GGATG	4 cut(s)	114, 1045, 1066, 1114
BstFNI	CGCG	1 cut(s)	793
BstKTI	GATC	5 cut(s)	63, 634, 804, 923, 1081
BstMBI	GATC	5 cut(s)	60, 631, 801, 920, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	3 cut(s)	16, 119, 601
BstSCI	CCNGG	4 cut(s)	14, 117, 555, 599
BstSFI	CTRYAG	2 cut(s)	405, 990
BstUI	CGCG	1 cut(s)	793
BstV1I	GCAGC	2 cut(s)	1103, 1157
BstX2I	RGATCY	1 cut(s)	920
BstXI	CCANNNNNNTGG	2 cut(s)	607, 1109
BstYI	RGATCY	1 cut(s)	920
BsuRI	GGCC	1 cut(s)	599
BtgI	CCRYGG	2 cut(s)	264, 848
BtsCI	GGATG	4 cut(s)	114, 1045, 1066, 1114
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 886
BtuMI	TCGCGA	1 cut(s)	793
Cac8I	GCNNGC	3 cut(s)	791, 866, 934
CaiI	CAGNNNCTG	1 cut(s)	456
CciI	TCATGA	2 cut(s)	241, 1155
Cfr13I	GGNCC	3 cut(s)	480, 506, 1129
CseI	GACGC	1 cut(s)	870
Csp6I	GTAC	2 cut(s)	411, 1017
CviAII	CATG	8 cut(s)	242, 265, 770, 849, 1076, 1082, 1098, 1156
CviQI	GTAC	2 cut(s)	411, 1017
DdeI	CTNAG	3 cut(s)	74, 366, 711
DpnI	GATC	5 cut(s)	62, 633, 803, 922, 1080
DpnII	GATC	5 cut(s)	60, 631, 801, 920, 1078
DrdI	GACNNNNNNGTC	1 cut(s)	1171
DseDI	GACNNNNNNGTC	1 cut(s)	1171
Eam1104I	CTCTTC	2 cut(s)	417, 1038
EarI	CTCTTC	2 cut(s)	417, 1038
Eco130I	CCWWGG	2 cut(s)	264, 848
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	3 cut(s)	480, 506, 1129
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	3 cut(s)	14, 117, 599
EcoT14I	CCWWGG	2 cut(s)	264, 848
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	264, 848
FaeI	CATG	8 cut(s)	245, 268, 773, 852, 1079, 1085, 1101, 1159
FaqI	GGGAC	3 cut(s)	388, 572, 704
FatI	CATG	8 cut(s)	241, 264, 769, 848, 1075, 1081, 1097, 1155
FbaI	TGATCA	1 cut(s)	1078
Fnu4HI	GCNGC	2 cut(s)	1092, 1146
FokI	GGATG	4 cut(s)	101, 1052, 1073, 1121
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	2 cut(s)	1092, 1146
FspBI	CTAG	3 cut(s)	87, 914, 1133
GluI	GCNGC	2 cut(s)	1092, 1146
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	1 cut(s)	556
HgaI	GACGC	1 cut(s)	870
Hin1II	CATG	8 cut(s)	245, 268, 773, 852, 1079, 1085, 1101, 1159
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	5 cut(s)	517, 560, 684, 721, 950
HpaII	CCGG	1 cut(s)	556
HphI	GGTGA	2 cut(s)	213, 456
Hpy166II	GTNNAC	2 cut(s)	25, 356
Hpy188I	TCNGA	3 cut(s)	877, 955, 1177
Hpy188III	TCNNGA	7 cut(s)	242, 335, 509, 521, 593, 792, 1156
Hpy8I	GTNNAC	2 cut(s)	25, 356
HpyAV	CCTTC	2 cut(s)	246, 956
HpyCH4III	ACNGT	2 cut(s)	439, 881
HpyCH4V	TGCA	6 cut(s)	130, 148, 190, 769, 936, 1091
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	3 cut(s)	74, 366, 711
Hsp92II	CATG	8 cut(s)	245, 268, 773, 852, 1079, 1085, 1101, 1159
Ksp22I	TGATCA	1 cut(s)	1078
Kzo9I	GATC	5 cut(s)	60, 631, 801, 920, 1078
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	2 cut(s)	1103, 1157
LweI	GCATC	2 cut(s)	123, 209
MaeI	CTAG	3 cut(s)	87, 914, 1133
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	5 cut(s)	62, 633, 803, 922, 1080
MboI	GATC	5 cut(s)	60, 631, 801, 920, 1078
MboII	GAAGA	4 cut(s)	267, 434, 865, 1055
MflI	RGATCY	1 cut(s)	920
MhlI	GDGCHC	2 cut(s)	10, 1009
MluCI	AATT	5 cut(s)	131, 138, 248, 258, 841
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	516
MslI	CAYNNNNRTG	5 cut(s)	304, 768, 1080, 1107, 1160
MspI	CCGG	1 cut(s)	556
MspR9I	CCNGG	4 cut(s)	16, 119, 557, 601
MvaI	CCWGG	3 cut(s)	16, 119, 601
MvnI	CGCG	1 cut(s)	793
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	557
NcoI	CCATGG	2 cut(s)	264, 848
NdeII	GATC	5 cut(s)	60, 631, 801, 920, 1078
NlaIII	CATG	8 cut(s)	245, 268, 773, 852, 1079, 1085, 1101, 1159
NlaIV	GGNNCC	2 cut(s)	7, 481
NmuCI	GTSAC	1 cut(s)	219
NruI	TCGCGA	1 cut(s)	793
PagI	TCATGA	2 cut(s)	241, 1155
PcsI	WCGNNNNNNNCGW	1 cut(s)	797
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	4 cut(s)	517, 684, 721, 950
PflMI	CCANNNNNTGG	1 cut(s)	575
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	2 cut(s)	1093, 1147
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Psp6I	CCWGG	3 cut(s)	14, 117, 599
PspGI	CCWGG	3 cut(s)	14, 117, 599
PspN4I	GGNNCC	2 cut(s)	7, 481
PspPI	GGNCC	3 cut(s)	480, 506, 1129
PsrI	GAACNNNNNNTAC	2 cut(s)	315, 347
PstNI	CAGNNNCTG	1 cut(s)	456
PsuI	RGATCY	1 cut(s)	920
RruI	TCGCGA	1 cut(s)	793
RsaI	GTAC	2 cut(s)	412, 1018
RsaNI	GTAC	2 cut(s)	411, 1017
RseI	CAYNNNNRTG	5 cut(s)	304, 768, 1080, 1107, 1160
SatI	GCNGC	2 cut(s)	1092, 1146
Sau3AI	GATC	5 cut(s)	60, 631, 801, 920, 1078
Sau96I	GGNCC	3 cut(s)	480, 506, 1129
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	4 cut(s)	16, 119, 557, 601
SduI	GDGCHC	2 cut(s)	10, 1009
SfaNI	GCATC	2 cut(s)	123, 209
SfcI	CTRYAG	2 cut(s)	405, 990
SinI	GGWCC	3 cut(s)	480, 506, 1129
SmiMI	CAYNNNNRTG	5 cut(s)	304, 768, 1080, 1107, 1160
SmlI	CTYRAG	1 cut(s)	1055
SmoI	CTYRAG	1 cut(s)	1055
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	5 cut(s)	131, 138, 248, 258, 841
SspMI	CTAG	3 cut(s)	87, 914, 1133
StyD4I	CCNGG	4 cut(s)	14, 117, 555, 599
StyI	CCWWGG	2 cut(s)	264, 848
TaaI	ACNGT	2 cut(s)	439, 881
TasI	AATT	5 cut(s)	131, 138, 248, 258, 841
TfiI	GAWTC	4 cut(s)	517, 684, 721, 950
TscAI	CASTG	2 cut(s)	192, 886
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	2 cut(s)	1091, 1145
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	8 cut(s)	132, 258, 786, 825, 963, 1056, 1080, 1086
TspGWI	ACGGA	2 cut(s)	478, 1121
TspRI	CASTG	2 cut(s)	192, 886
Van91I	CCANNNNNTGG	1 cut(s)	575
VpaK11BI	GGWCC	3 cut(s)	480, 506, 1129
XapI	RAATTY	2 cut(s)	138, 258
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	3 cut(s)	87, 914, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.