Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Forward (+)

6942027 .. 6947288

Gene Structure 5262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0088100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2904 bp

ATGCATGTGTCGTCATCCTCCTCCGTGCTGATATCATCTCCACTCCAATGGAGAACTCCATCTCAACACGTATCATTCACTCATCTTCCCTTACAATCCGTTACGACTTCCACTACTATCAGTTACGCCCGTGATCGAAGAAACGCCGTCGTTTCCCTCTACCCAATTCGCCTTATACACAACCCATTTTCTTCTTCCTTCTTGTCCCAAACCAAAGCCGCTCCCTTTCTCGGCGGCCGGAGGAGGAGAAAGAACTCGAAGCTCCAAATCGTCTCCGCCGTCTTCGAGCGGTTCACGGAGCGCGCGATCAAAGCCGTCATCTTTTCCCAGAGAGAAGCCAAAGCTCTGGGCCGGGACATGGTGTTTACTCAGCACCTCTTGCTCGGTTTGATCGCCGAGGAGGAGCAGCAGCATCGCCATCTTCATCCCAATTCGCGCGGGTTTCTCGGGTCGGGCATGACCCTGGAGCAGGCCCGCCGCGCCGTCCGGAGCATTTGGCGGCATAATAGTCAAAGTCAAAGCCAAGGTCAAGCTTCTTCTGCTGGCTCTGGTTCGGGTTCGGGTTCTGCTAGGGATCTCTCGTTTTCGATTAGCACAAAGAGAGTTCTGGAGGCTGCGCTGGAGTATTCGAGGAGTAGAGCTCATAATTTTATTGCACCGGAGCACATTGTCATCGGTCTATTGACTGTTGATGATGGAAGTGCTGGTCAGGTTCTTAAAAGACTGGGGGTAAATGTAAACCAGTTGTTAGCTGAGGCAGCCTCCAGACTTCAAATAGAGCTTGCCAAAGATGGTAGAGAGCCATCTGGGGGATCTCAAAAGACATTTTCTAAAAAGTCAACTGCATCGTCTGAGAAAACCAAAGAAAAAAGTGCTTTGGAGCGGTTCTGTGTGGATCTCACTGCTCGTGCTAGTGAGGGACGCATTGATCCTGTTATTGGCCGGGATACTGAAGTTCAGAGAATTATTCAGATACTTTGTCGCAGAACTAAAAATAATCCCATTCTTCTCGGTCAAAGTGGGGTTGGAAAGACAGCCATTGTTGAAGGTCTGGCAACTAGTATTGCACAGGCAGATGTCCCTGTTTATCTGTTGACAAAACGCGTAATGTCTTTGGACGTGGCACTGTTAATGGCTGGTGCAAAGGAGAGGGGAGAGTTGGAGGCGCGTGTTACCTCCTTAATAAGTGATGTACAAAAATCAGGAAATGTTATTCTGTTTATTGATGAAGTTCATACCCTTATTGAGTCCGGCACAGTTGGACGAGGAAATAAGGGGTCTGGTCTTGACATTGCTAATATAATGAAACCAGCACTTGGGAGGGGTAAATTACAGTGTATTGCATCAACTACTACCGATGAATACAGGATGCATCTTGAAAAGGATAAAGCATTTGGACGAAGATTCCAACCTGTCTGGATCAATGAACCAAGCCAGGACGATGCAGTTAGGATTCTGTTTGGTTTGCGTGAGAAATATGAGGCCCATCACAACTGCATATATGCACCAGAAGCCATTAGTGCTGCTGTGCACCTGTCAGCAAGATATATTCCTGATAGATATCTTCCTGATAAAGCTATCGATCTCCTTGATGAGGCGGGAAGTAGAGCTCGTATGGAAGCCTTTAAGAAGAAAAAAGAAGAGCGGGTTGGCATACTTTCAAAGTCACCTGATGATTATTGGCAAGAAATTCGTACAGTTCAGGCAATGCATGAAGTGGTCCTATCAAGTGAACTGAAAAATGGAGCTGCTTCTGTGGATGATACCAGAGAACATATTCTAGAGTCCATTTCATCTTCCACAGTAGATGATGAACCTACTGTGGTGGGACCAAATGATATAGCAGCAGTTGCCTCACTATGGTCAGGAGTCCCTCTTCAGCAGCTCACTGCTGATGACCGACTGCTTTTGGTGGGTCTTGATGAGAAGCTCAGAAGACGGGTTGTTGGTCAAGATGAGGCTGTTGCAGCCATTTCTCGAGCTGTTAGGAGGTCCCGGGTTGGATTGAAGGATCCAAGTAGACCCATGGCAACAATGCTCTTTTGCGGTCCTACTGGAGTTGGCAAAACTGAACTGACAAAAGCTTTGTCTGCATGTTATTTTGGATCGGAGGAAGCTATGGTACGACTGGACATGAGTGAATATATGGAGCGGCACTCTGTCAGCAAATTAATAGGGTCACCCCCAGGCTATGTTGGCTTTGGAGAGGGAGGCACTCTAACAGAAGCTATCAGAAGACGACCTTTTACAGTAGTTGTGCTTGATGAAATCGAGAAGGCCCATCCAGATATATTCAACATCCTTCTCCAAATCTTTGAAGATGGCCACCTTACTGATTCTCAGGGACGAAGAGTATCGTTTAAGAATGCTTTGGTAGTGATGACATCTAATGTGGGTTCCACTATCATTGCAAAGGGTCGAAAAAGCTCCATTGGTTTTGTGCTTACAGACGATGAGTCAAGTACATATGCCGGGATAAAAGCAACAGTAATGGAAGAACTCAAGTCATATTTTCGTCCAGAGTTGCTCAACAGGATAGACGAAGTAGTTGTATTCCATCCCCTTGAAAAGTCTCAGATGCTGGAGATTGTAAATATAATGCTACAAGAAGTGAAGCAGAGGCTAATATCTCTGGGAATTGGACTAGAGGTGTCTGAATCAGTCAAGAACCTCATATGCAAAGAAGGCTATGATCGGATCTATGGTGCTCGCCCTCTTAGACGAGCAATTACATTAATAATTGAAGACCCATTGAGTGAAGCCCTCCTTGCTGGAGTTTACCAGCCTGGTGACACTGCCGTCATTGATTTAGATGCTTCTGGGAACCCTTCTGTAAGTAATGGATCAGGTGAGAGTAGTATCCCTTTCTCTAAAACCAATATACAGCATCCATCTTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

967

Amino Acids

106.07

Weight (kDa)

8.87

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	195 - 265	2.9e-11	Clp repeat (R) N-terminal domain
AAA_16	PF13191	312 - 365	8.4e-06	AAA ATPase domain
NBD_SMAX1	PF23569	318 - 419	5.8e-06	SMAX1 nucleotide binding domain
AAA	PF00004	335 - 451	6e-09	ATPase family associated with various cellular activities (AAA)
AAA_lid_9	PF17871	478 - 554	9.2e-27	AAA lid domain
AAA_2	PF07724	674 - 849	3e-63	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	679 - 799	7.9e-11	AAA domain (dynein-related subfamily)
ClpB_D2-small	PF10431	855 - 934	2.9e-23	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2798
AccB7I	CCANNNNNTGG	1 cut(s)	1316
AccBSI	CCGCTC	5 cut(s)	221, 289, 883, 1645, 2152
AccI	GTMKAC	1 cut(s)	2020
AccII	CGCG	7 cut(s)	303, 305, 436, 438, 480, 1104, 1168
AccIII	TCCGGA	1 cut(s)	486
AcoI	YGGCCR	3 cut(s)	235, 940, 2323
AcsI	RAATTY	1 cut(s)	1689
AcuI	CTGAAG	2 cut(s)	972, 1862
AfaI	GTAC	4 cut(s)	1194, 1696, 2124, 2464
AfiI	CCNNNNNNNGG	8 cut(s)	230, 358, 469, 809, 938, 1316, 1594, 1860
AflIII	ACRYGT	2 cut(s)	67, 1102
AgsI	TTSAA	9 cut(s)	773, 1046, 1379, 1662, 2008, 2296, 2318, 2567, 2744
AhdI	GACNNNNNGTC	1 cut(s)	2455
AhlI	ACTAGT	1 cut(s)	1058
AjiI	CACGTC	1 cut(s)	1120
AjnI	CCWGG	4 cut(s)	462, 1434, 2185, 2785
AjuI	GAANNNNNNNTTGG	2 cut(s)	1632, 1664
Alw21I	GWGCWC	5 cut(s)	643, 666, 1533, 1612, 2710
Alw26I	GTCTC	2 cut(s)	277, 2577
Alw44I	GTGCAC	1 cut(s)	1529
AlwNI	CAGNNNCTG	1 cut(s)	2581
Ama87I	CYCGRG	3 cut(s)	446, 1977, 1995
Aor13HI	TCCGGA	1 cut(s)	486
AoxI	GGCC	7 cut(s)	235, 349, 471, 940, 1482, 2277, 2323
ApaLI	GTGCAC	1 cut(s)	1529
ApeKI	GCWGC	9 cut(s)	406, 409, 614, 758, 1523, 1748, 1844, 1882, 1967
ApoI	RAATTY	1 cut(s)	1689
ArsI	GACNNNNNNTTYG	6 cut(s)	511, 543, 2068, 2072, 2100, 2104
AseI	ATTAAT	2 cut(s)	2171, 2735
Asp700I	GAANNNNTTC	1 cut(s)	1776
AspLEI	GCGC	6 cut(s)	303, 305, 438, 482, 619, 1168
AspS9I	GGNCC	8 cut(s)	349, 472, 1483, 1720, 1829, 1992, 2048, 2278
AsuC2I	CCSGG	5 cut(s)	353, 944, 1996, 1997, 2473
AsuHPI	GGTGA	4 cut(s)	1659, 2172, 2801, 2861
AvaI	CYCGRG	3 cut(s)	446, 1977, 1995
AvaII	GGWCC	4 cut(s)	1720, 1829, 1992, 2048
BaeGI	GKGCMC	1 cut(s)	1533
BaeI	ACNNNNGTAYC	2 cut(s)	939, 972
BalI	TGGCCA	1 cut(s)	2325
BamHI	GGATCC	1 cut(s)	2011
BanII	GRGCYC	2 cut(s)	643, 1612
BarI	GAAGNNNNNNTAC	2 cut(s)	2106, 2138
BauI	CACGAG	1 cut(s)	906
BbsI	GAAGAC	4 cut(s)	274, 1942, 2242, 2751
Bbv12I	GWGCWC	5 cut(s)	643, 666, 1533, 1612, 2710
BbvCI	CCTCAGC	1 cut(s)	753
BbvI	GCAGC	9 cut(s)	418, 421, 601, 770, 1510, 1735, 1856, 1894, 1979
BceAI	ACGGC	5 cut(s)	131, 263, 299, 467, 2783
BcgI	CGANNNNNNTGC	4 cut(s)	395, 429, 1673, 1707
BciT130I	CCWGG	4 cut(s)	464, 1436, 2187, 2787
BciVI	GTATCC	2 cut(s)	940, 2870
BcnI	CCSGG	5 cut(s)	353, 944, 1996, 1997, 2473
BcoDI	GTCTC	2 cut(s)	277, 2577
BcuI	ACTAGT	1 cut(s)	1058
BfaI	CTAG	5 cut(s)	570, 912, 1059, 1781, 2645
BfuI	GTATCC	2 cut(s)	940, 2870
Bme1390I	CCNGG	9 cut(s)	353, 464, 944, 1436, 1996, 1997, 2187, 2473, 2787
Bme18I	GGWCC	4 cut(s)	1720, 1829, 1992, 2048
BmeRI	GACNNNNNGTC	1 cut(s)	2455
BmeT110I	CYCGRG	3 cut(s)	446, 1977, 1995
BmgBI	CACGTC	1 cut(s)	1120
BmgT120I	GGNCC	8 cut(s)	349, 472, 1483, 1720, 1829, 1992, 2048, 2278
BmiI	GGNNCC	5 cut(s)	1830, 1994, 2013, 2398, 2825
BmrFI	CCNGG	9 cut(s)	353, 464, 944, 1436, 1996, 1997, 2187, 2473, 2787
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	9 cut(s)	421, 854, 1352, 1359, 1381, 1432, 2568, 2803, 2896
BmuI	ACTGGG	1 cut(s)	734
BpiI	GAAGAC	4 cut(s)	274, 1942, 2242, 2751
BplI	GAGNNNNNCTC	6 cut(s)	625, 657, 746, 778, 2141, 2173
BpmI	CTGGAG	7 cut(s)	485, 629, 641, 748, 2076, 2603, 2793
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	2486
BpuMI	CCSGG	5 cut(s)	353, 944, 1996, 1997, 2473
Bsa29I	ATCGAT	1 cut(s)	1581
BsaAI	YACGTR	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	1560
BsaJI	CCNNGG	6 cut(s)	396, 462, 523, 1995, 2025, 2185
BsaWI	WCCGGW	2 cut(s)	486, 658
Bsc4I	CCNNNNNNNGG	8 cut(s)	230, 358, 469, 809, 938, 1316, 1594, 1860
Bse1I	ACTGG	4 cut(s)	729, 742, 2059, 2133
Bse3DI	GCAATG	3 cut(s)	1290, 1713, 2406
Bse8I	GATNNNNATC	1 cut(s)	1560
BseAI	TCCGGA	1 cut(s)	486
BseBI	CCWGG	4 cut(s)	464, 1436, 2187, 2787
BseCI	ATCGAT	1 cut(s)	1581
BseDI	CCNNGG	6 cut(s)	396, 462, 523, 1995, 2025, 2185
BseGI	GGATG	8 cut(s)	14, 424, 1374, 1765, 2281, 2298, 2557, 2887
BseJI	GATNNNNATC	1 cut(s)	1560
BseLI	CCNNNNNNNGG	8 cut(s)	230, 358, 469, 809, 938, 1316, 1594, 1860
BseMI	GCAATG	3 cut(s)	1290, 1713, 2406
BseMII	CTCAG	6 cut(s)	383, 744, 843, 1945, 2354, 2588
BseNI	ACTGG	4 cut(s)	729, 742, 2059, 2133
BsePI	GCGCGC	1 cut(s)	301
BseRI	GAGGAG	6 cut(s)	10, 256, 259, 413, 416, 646
BseSI	GKGCMC	1 cut(s)	1533
BseX3I	CGGCCG	1 cut(s)	235
BseXI	GCAGC	9 cut(s)	418, 421, 601, 770, 1510, 1735, 1856, 1894, 1979
Bsh1236I	CGCG	7 cut(s)	303, 305, 436, 438, 480, 1104, 1168
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	7 cut(s)	237, 351, 473, 942, 1484, 2279, 2325
BshVI	ATCGAT	1 cut(s)	1581
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	5 cut(s)	643, 666, 1533, 1612, 2710
BsiHKCI	CYCGRG	3 cut(s)	446, 1977, 1995
BsiSI	CCGG	8 cut(s)	238, 352, 487, 659, 943, 1251, 1996, 2472
BslFI	GGGAC	8 cut(s)	190, 368, 933, 1064, 1842, 1856, 1978, 2358
BslI	CCNNNNNNNGG	8 cut(s)	230, 358, 469, 809, 938, 1316, 1594, 1860
BsmAI	GTCTC	2 cut(s)	277, 2577
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	8 cut(s)	190, 368, 933, 1064, 1842, 1856, 1978, 2358
BsmI	GAATGC	1 cut(s)	2371
BsnI	GGCC	7 cut(s)	237, 351, 473, 942, 1484, 2279, 2325
BsoBI	CYCGRG	3 cut(s)	446, 1977, 1995
Bsp1286I	GDGCHC	5 cut(s)	643, 666, 1533, 1612, 2710
Bsp13I	TCCGGA	1 cut(s)	486
Bsp1407I	TGTACA	1 cut(s)	1192
Bsp19I	CCATGG	1 cut(s)	2025
BspANI	GGCC	7 cut(s)	237, 351, 473, 942, 1484, 2279, 2325
BspCNI	CTCAG	6 cut(s)	382, 745, 844, 1944, 2353, 2587
BspDI	ATCGAT	1 cut(s)	1581
BspEI	TCCGGA	1 cut(s)	486
BspFNI	CGCG	7 cut(s)	303, 305, 436, 438, 480, 1104, 1168
BspLI	GGNNCC	5 cut(s)	1830, 1994, 2013, 2398, 2825
BspQI	GCTCTTC	1 cut(s)	1635
BsrBI	CCGCTC	5 cut(s)	221, 289, 883, 1645, 2152
BsrDI	GCAATG	3 cut(s)	1290, 1713, 2406
BsrGI	TGTACA	1 cut(s)	1192
BsrI	ACTGG	4 cut(s)	729, 742, 2059, 2133
BssECI	CCNNGG	6 cut(s)	396, 462, 523, 1995, 2025, 2185
BssHII	GCGCGC	1 cut(s)	301
BssSI	CACGAG	1 cut(s)	906
BssT1I	CCWWGG	2 cut(s)	523, 2025
Bst2BI	CACGAG	1 cut(s)	906
Bst2UI	CCWGG	4 cut(s)	464, 1436, 2187, 2787
Bst4CI	ACNGT	9 cut(s)	688, 1128, 1258, 1335, 1699, 1804, 1822, 2251, 2488
Bst6I	CTCTTC	3 cut(s)	1635, 1881, 2344
BstAPI	GCANNNNNTGC	2 cut(s)	379, 1850
BstAUI	TGTACA	1 cut(s)	1192
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	6 cut(s)	303, 471, 475, 544, 783, 2710
BstDEI	CTNAG	7 cut(s)	369, 753, 852, 1931, 2340, 2574, 2717
BstDSI	CCRYGG	1 cut(s)	2025
BstEII	GGTNACC	1 cut(s)	2178
BstENI	CCTNNNNNAGG	2 cut(s)	467, 1592
BstF5I	GGATG	8 cut(s)	14, 424, 1374, 1765, 2281, 2298, 2557, 2887
BstFNI	CGCG	7 cut(s)	303, 305, 436, 438, 480, 1104, 1168
BstHHI	GCGC	6 cut(s)	303, 305, 438, 482, 619, 1168
BstMAI	GTCTC	2 cut(s)	277, 2577
BstMCI	CGRYCG	1 cut(s)	238
BstNI	CCWGG	4 cut(s)	464, 1436, 2187, 2787
BstNSI	RCATGY	2 cut(s)	8, 2097
BstPI	GGTNACC	1 cut(s)	2178
BstSCI	CCNGG	9 cut(s)	351, 462, 942, 1434, 1994, 1995, 2185, 2471, 2785
BstSLI	GKGCMC	1 cut(s)	1533
BstUI	CGCG	7 cut(s)	303, 305, 436, 438, 480, 1104, 1168
BstV1I	GCAGC	9 cut(s)	418, 421, 601, 770, 1510, 1735, 1856, 1894, 1979
BstV2I	GAAGAC	4 cut(s)	274, 1942, 2242, 2751
BstX2I	RGATCY	5 cut(s)	574, 812, 895, 2011, 2697
BstXI	CCANNNNNNTGG	2 cut(s)	48, 346
BstYI	RGATCY	5 cut(s)	574, 812, 895, 2011, 2697
BstZI	CGGCCG	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	1581
BsuI	GTATCC	2 cut(s)	940, 2870
BsuRI	GGCC	7 cut(s)	237, 351, 473, 942, 1484, 2279, 2325
BsuTUI	ATCGAT	1 cut(s)	1581
BtgI	CCRYGG	1 cut(s)	2025
BtgZI	GCGATG	1 cut(s)	398
BtrI	CACGTC	1 cut(s)	1120
BtsCI	GGATG	8 cut(s)	14, 424, 1374, 1765, 2281, 2298, 2557, 2887
BtsI	GCAGTG	3 cut(s)	900, 1887, 2793
BtsIMutI	CAGTG	5 cut(s)	900, 1124, 1340, 1887, 2793
Cac8I	GCNNGC	6 cut(s)	303, 471, 475, 544, 783, 2710
CaiI	CAGNNNCTG	1 cut(s)	2581
CfoI	GCGC	6 cut(s)	303, 305, 438, 482, 619, 1168
Cfr13I	GGNCC	8 cut(s)	349, 472, 1483, 1720, 1829, 1992, 2048, 2278
Cfr9I	CCCGGG	1 cut(s)	1995
ClaI	ATCGAT	1 cut(s)	1581
CseI	GACGC	1 cut(s)	930
Csp6I	GTAC	4 cut(s)	1193, 1695, 2123, 2463
CspCI	CAANNNNNGTGG	2 cut(s)	2389, 2424
CviAII	CATG	7 cut(s)	5, 358, 457, 1712, 2026, 2094, 2134
CviQI	GTAC	4 cut(s)	1193, 1695, 2123, 2463
DdeI	CTNAG	7 cut(s)	369, 753, 852, 1931, 2340, 2574, 2717
DrdI	GACNNNNNNGTC	1 cut(s)	2798
DriI	GACNNNNNGTC	1 cut(s)	2455
DseDI	GACNNNNNNGTC	1 cut(s)	2798
EaeI	YGGCCR	3 cut(s)	235, 940, 2323
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	3 cut(s)	1635, 1881, 2344
Eam1105I	GACNNNNNGTC	1 cut(s)	2455
EarI	CTCTTC	3 cut(s)	1635, 1881, 2344
EciI	GGCGGA	1 cut(s)	265
Ecl136II	GAGCTC	2 cut(s)	641, 1610
EclXI	CGGCCG	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	523, 2025
Eco24I	GRGCYC	2 cut(s)	643, 1612
Eco32I	GATATC	2 cut(s)	33, 1562
Eco47I	GGWCC	4 cut(s)	1720, 1829, 1992, 2048
Eco52I	CGGCCG	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	641, 1610
Eco57I	CTGAAG	2 cut(s)	972, 1862
Eco88I	CYCGRG	3 cut(s)	446, 1977, 1995
Eco91I	GGTNACC	1 cut(s)	2178
EcoICRI	GAGCTC	2 cut(s)	641, 1610
EcoNI	CCTNNNNNAGG	2 cut(s)	467, 1592
EcoO109I	RGGNCCY	1 cut(s)	1992
EcoO65I	GGTNACC	1 cut(s)	2178
EcoRII	CCWGG	4 cut(s)	462, 1434, 2185, 2785
EcoRV	GATATC	2 cut(s)	33, 1562
EcoT14I	CCWWGG	2 cut(s)	523, 2025
EcoT22I	ATGCAT	3 cut(s)	6, 1374, 1713
EcoT38I	GRGCYC	2 cut(s)	643, 1612
ErhI	CCWWGG	2 cut(s)	523, 2025
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	7 cut(s)	8, 361, 460, 1715, 2029, 2097, 2137
FalI	AAGNNNNNCTT	4 cut(s)	2227, 2259, 2751, 2783
FaqI	GGGAC	8 cut(s)	190, 368, 933, 1064, 1842, 1856, 1978, 2358
FatI	CATG	7 cut(s)	4, 357, 456, 1711, 2025, 2093, 2133
FauI	CCCGC	4 cut(s)	431, 482, 1591, 1638
FauNDI	CATATG	2 cut(s)	2467, 2675
FblI	GTMKAC	1 cut(s)	2020
FokI	GGATG	7 cut(s)	411, 1381, 1772, 2268, 2285, 2544, 2874
FriOI	GRGCYC	2 cut(s)	643, 1612
FspBI	CTAG	5 cut(s)	570, 912, 1059, 1781, 2645
GlaI	GCGC	6 cut(s)	302, 304, 437, 481, 618, 1167
GsuI	CTGGAG	7 cut(s)	485, 629, 641, 748, 2076, 2603, 2793
HaeIII	GGCC	7 cut(s)	237, 351, 473, 942, 1484, 2279, 2325
HapII	CCGG	8 cut(s)	238, 352, 487, 659, 943, 1251, 1996, 2472
HgaI	GACGC	1 cut(s)	930
HhaI	GCGC	6 cut(s)	303, 305, 438, 482, 619, 1168
Hin1II	CATG	7 cut(s)	8, 361, 460, 1715, 2029, 2097, 2137
Hin6I	GCGC	6 cut(s)	301, 303, 436, 480, 617, 1166
HinP1I	GCGC	6 cut(s)	301, 303, 436, 480, 617, 1166
HincII	GTYRAC	2 cut(s)	840, 1095
HindII	GTYRAC	2 cut(s)	840, 1095
HindIII	AAGCTT	2 cut(s)	531, 2082
HinfI	GANTC	8 cut(s)	1247, 1404, 1453, 1784, 1869, 2336, 2456, 2657
HpaII	CCGG	8 cut(s)	238, 352, 487, 659, 943, 1251, 1996, 2472
HphI	GGTGA	4 cut(s)	1659, 2172, 2801, 2861
Hpy166II	GTNNAC	9 cut(s)	294, 366, 739, 840, 1095, 1531, 1733, 2021, 2779
Hpy188I	TCNGA	9 cut(s)	853, 960, 972, 1934, 2110, 2234, 2577, 2656, 2697
Hpy8I	GTNNAC	9 cut(s)	294, 366, 739, 840, 1095, 1531, 1733, 2021, 2779
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	7 cut(s)	208, 1040, 2002, 2269, 2312, 2678, 2838
HpyCH4III	ACNGT	9 cut(s)	688, 1128, 1258, 1335, 1699, 1804, 1822, 2251, 2488
HpyCH4IV	ACGT	2 cut(s)	69, 1119
HpyF3I	CTNAG	7 cut(s)	369, 753, 852, 1931, 2340, 2574, 2717
HpySE526I	ACGT	2 cut(s)	69, 1119
Hsp92II	CATG	7 cut(s)	8, 361, 460, 1715, 2029, 2097, 2137
HspAI	GCGC	6 cut(s)	301, 303, 436, 480, 617, 1166
Kpn2I	TCCGGA	1 cut(s)	486
LguI	GCTCTTC	1 cut(s)	1635
Lsp1109I	GCAGC	9 cut(s)	418, 421, 601, 770, 1510, 1735, 1856, 1894, 1979
LweI	GCATC	9 cut(s)	421, 854, 1352, 1359, 1381, 1432, 2568, 2803, 2896
MaeI	CTAG	5 cut(s)	570, 912, 1059, 1781, 2645
MaeII	ACGT	2 cut(s)	69, 1119
MaeIII	GTNAC	6 cut(s)	100, 122, 1171, 1665, 2178, 2789
MbiI	CCGCTC	5 cut(s)	221, 289, 883, 1645, 2152
MflI	RGATCY	5 cut(s)	574, 812, 895, 2011, 2697
MhlI	GDGCHC	5 cut(s)	643, 666, 1533, 1612, 2710
MlsI	TGGCCA	1 cut(s)	2325
MluI	ACGCGT	1 cut(s)	1102
MluNI	TGGCCA	1 cut(s)	2325
MlyI	GAGTC	4 cut(s)	1256, 1793, 1878, 2465
MmeI	TCCRAC	5 cut(s)	1006, 1140, 1240, 1432, 1981
Mox20I	TGGCCA	1 cut(s)	2325
Mph1103I	ATGCAT	3 cut(s)	6, 1374, 1713
MroI	TCCGGA	1 cut(s)	486
MroXI	GAANNNNTTC	1 cut(s)	1776
MscI	TGGCCA	1 cut(s)	2325
MseI	TTAA	8 cut(s)	717, 1130, 1181, 1626, 2171, 2361, 2735, 2902
MslI	CAYNNNNRTG	1 cut(s)	46
Msp20I	TGGCCA	1 cut(s)	2325
MspI	CCGG	8 cut(s)	238, 352, 487, 659, 943, 1251, 1996, 2472
MspR9I	CCNGG	9 cut(s)	353, 464, 944, 1436, 1996, 1997, 2187, 2473, 2787
Mva1269I	GAATGC	1 cut(s)	2371
MvaI	CCWGG	4 cut(s)	464, 1436, 2187, 2787
MvnI	CGCG	7 cut(s)	303, 305, 436, 438, 480, 1104, 1168
NciI	CCSGG	5 cut(s)	353, 944, 1996, 1997, 2473
NcoI	CCATGG	1 cut(s)	2025
NdeI	CATATG	2 cut(s)	2467, 2675
NlaIII	CATG	7 cut(s)	8, 361, 460, 1715, 2029, 2097, 2137
NlaIV	GGNNCC	5 cut(s)	1830, 1994, 2013, 2398, 2825
NmeAIII	GCCGAG	2 cut(s)	210, 421
NmuCI	GTSAC	3 cut(s)	1665, 2178, 2789
NsiI	ATGCAT	3 cut(s)	6, 1374, 1713
NspI	RCATGY	2 cut(s)	8, 2097
PaeR7I	CTCGAG	1 cut(s)	1977
PauI	GCGCGC	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	1635
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 302
PctI	GAATGC	1 cut(s)	2371
PdmI	GAANNNNTTC	1 cut(s)	1776
PfeI	GAWTC	4 cut(s)	1404, 1453, 2336, 2657
PflMI	CCANNNNNTGG	1 cut(s)	1316
PleI	GAGTC	4 cut(s)	1255, 1792, 1877, 2464
PpsI	GAGTC	4 cut(s)	1255, 1792, 1877, 2464
Ppu21I	YACGTR	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	1992
PshBI	ATTAAT	2 cut(s)	2171, 2735
Psp124BI	GAGCTC	2 cut(s)	643, 1612
Psp5II	RGGWCCY	1 cut(s)	1992
Psp6I	CCWGG	4 cut(s)	462, 1434, 2185, 2785
PspEI	GGTNACC	1 cut(s)	2178
PspGI	CCWGG	4 cut(s)	462, 1434, 2185, 2785
PspN4I	GGNNCC	5 cut(s)	1830, 1994, 2013, 2398, 2825
PspPI	GGNCC	8 cut(s)	349, 472, 1483, 1720, 1829, 1992, 2048, 2278
PspPPI	RGGWCCY	1 cut(s)	1992
PstNI	CAGNNNCTG	1 cut(s)	2581
PsuI	RGATCY	5 cut(s)	574, 812, 895, 2011, 2697
PteI	GCGCGC	1 cut(s)	301
RsaI	GTAC	4 cut(s)	1194, 1696, 2124, 2464
RsaNI	GTAC	4 cut(s)	1193, 1695, 2123, 2463
RseI	CAYNNNNRTG	1 cut(s)	46
SacI	GAGCTC	2 cut(s)	643, 1612
SapI	GCTCTTC	1 cut(s)	1635
SaqAI	TTAA	8 cut(s)	717, 1130, 1181, 1626, 2171, 2361, 2735, 2902
Sau96I	GGNCC	8 cut(s)	349, 472, 1483, 1720, 1829, 1992, 2048, 2278
SchI	GAGTC	4 cut(s)	1256, 1793, 1878, 2465
ScrFI	CCNGG	9 cut(s)	353, 464, 944, 1436, 1996, 1997, 2187, 2473, 2787
SduI	GDGCHC	5 cut(s)	643, 666, 1533, 1612, 2710
SfaNI	GCATC	9 cut(s)	421, 854, 1352, 1359, 1381, 1432, 2568, 2803, 2896
Sfr274I	CTCGAG	1 cut(s)	1977
SinI	GGWCC	4 cut(s)	1720, 1829, 1992, 2048
SlaI	CTCGAG	1 cut(s)	1977
SmaI	CCCGGG	1 cut(s)	1997
SmiMI	CAYNNNNRTG	1 cut(s)	46
SmlI	CTYRAG	2 cut(s)	1977, 2501
SmoI	CTYRAG	2 cut(s)	1977, 2501
SpeI	ACTAGT	1 cut(s)	1058
SspMI	CTAG	5 cut(s)	570, 912, 1059, 1781, 2645
SstI	GAGCTC	2 cut(s)	643, 1612
StyD4I	CCNGG	9 cut(s)	351, 462, 942, 1434, 1994, 1995, 2185, 2471, 2785
StyI	CCWWGG	2 cut(s)	523, 2025
TaaI	ACNGT	9 cut(s)	688, 1128, 1258, 1335, 1699, 1804, 1822, 2251, 2488
TaiI	ACGT	2 cut(s)	72, 1122
TaqI	TCGA	9 cut(s)	136, 257, 285, 587, 629, 1581, 1978, 2271, 2419
TaqII	GACCGA	3 cut(s)	665, 1001, 1914
TatI	WGTACW	2 cut(s)	1192, 2462
TauI	GCSGC	5 cut(s)	221, 237, 480, 502, 2155
TfiI	GAWTC	4 cut(s)	1404, 1453, 2336, 2657
Tru1I	TTAA	8 cut(s)	717, 1130, 1181, 1626, 2171, 2361, 2735, 2902
Tru9I	TTAA	8 cut(s)	717, 1130, 1181, 1626, 2171, 2361, 2735, 2902
TscAI	CASTG	5 cut(s)	907, 1131, 1340, 1894, 2800
TseFI	GTSAC	3 cut(s)	1665, 2178, 2789
TseI	GCWGC	9 cut(s)	406, 409, 614, 758, 1523, 1748, 1844, 1882, 1967
Tsp45I	GTSAC	3 cut(s)	1665, 2178, 2789
TspGWI	ACGGA	3 cut(s)	13, 88, 311
TspMI	CCCGGG	1 cut(s)	1995
TspRI	CASTG	5 cut(s)	907, 1131, 1340, 1894, 2800
Van91I	CCANNNNNTGG	1 cut(s)	1316
VneI	GTGCAC	1 cut(s)	1529
VpaK11BI	GGWCC	4 cut(s)	1720, 1829, 1992, 2048
VspI	ATTAAT	2 cut(s)	2171, 2735
XagI	CCTNNNNNAGG	2 cut(s)	467, 1592
XapI	RAATTY	1 cut(s)	1689
XbaI	TCTAGA	1 cut(s)	1780
XceI	RCATGY	2 cut(s)	8, 2097
XhoI	CTCGAG	1 cut(s)	1977
XmaI	CCCGGG	1 cut(s)	1995
XmiI	GTMKAC	1 cut(s)	2020
XmnI	GAANNNNTTC	1 cut(s)	1776
XspI	CTAG	5 cut(s)	570, 912, 1059, 1781, 2645
Zsp2I	ATGCAT	3 cut(s)	6, 1374, 1713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.