FvH4_5g20100

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000355
Physical Location & Seq
Reverse (-)
11854269 .. 11855510
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20100.t1

Sequence Viewer

Length: 1242 bp
ATGGGGTCAGAGGGATCATTGCAGCGTACAGGGTCCTCGAGGAAACATGATGAGGAAACATTGGGCTCTTCCCATTCCAAGTTACTTGACCATAAAAGGCCAAGAGTCTCTGCCATTCGTGATTTTGCGCCAGGGTGTGGACGATCTACTCACTTCACAACTTCAGTTGGTAGTTCTGATGATATGGCTAGGGAACATCATGTCCCTGCCGTTCGTGATTTTCCCCAAGGATGCGGACCATCTGCTCGCTTGACAACTTCAGTTGGTACTTCTGATGTGGCTAGGAAACATCATGTAGGAGCCGTTCGAGATTTCCCTCCTCAATGTGGAACAAGTGCGTCTCAGGAGGCCAGAAACTTTGATCGAGAGGCGCAGTCAGTTAAGGGTGACAAACCATCAACATCATCAAACACTGACAAGACTAATGTGTATCGTTCATGGTGGACAGGAAAAGTTGCCCACAGATCTAAACCAAATGGAGATATTGGCCCAATAAAAAAGCAACCTGAAGCAAATCGTCAGCCAGAAAGATCTCGGAATGACTCGGACAATACTAGAGGAAAGACTACTCAATTTAGTGCTGCTAGCCTTCGTAACAACAACACATCTCTCATCCGAACGAAAGTGACAGAGACACTGAGTCGGTTCAGAGATCTTTGTATCGAGATTGAGCGTAAGAAGTTGAGGGAAGGAGCAGCAAATCCGAGAAGGATAGATTTTGAAGCTGCAAAGATCCTCAAGAAAGAAAGAGGATACGTTAATACAGGCTCACAAATAATGGGAGATGTACCAGGTGTGGAAGTTGGTGACATTTTTCGTTACAGAATTGAGCTCACCATTGTTGGGTTACATCGCCAGATTGAAGGTGGGATCGACTATACACATTTTGGTAACGAGTCGCTTGCAACTAGCATTGTGGCGTCTGGGGGGTATGCAGATGATACGCATGACTTGAACTCCCTAACTTACACCGGCCATGGAGGAAGCGTGATGCACCATAACCTCCCAGAGCATCAAGAGCTTAAACGCGGGAACCTGGCTTTGAAGAATAGTATCGACGCGGAGAATCCTGTTAGAGTGATACACGGGTCTGAGACTTCCGGTGGAAGAAAGCAGTATGTTTATGTTGGACTATATTTGGTGGAGAGGTGGTGGAAGGAAACGGGGGATCATGGAAAGATTGTTTACAAGTTTCAACTGAACAGAATTCAGGGCCAGAGATCGATCCCTTGGTTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

414

Amino Acids

45.88

Weight (kDa)

9.54

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 260 - 406 2.2e-48 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 37
AccB7I CCANNNNNTGG 1 cut(s) 137
AccII CGCG 2 cut(s) 1029, 1061
AciI CCGC 3 cut(s) 234, 1029, 1061
AclWI GGATC 5 cut(s) 22, 727, 878, 1176, 1219
AcoI YGGCCR 1 cut(s) 973
AcsI RAATTY 1 cut(s) 1206
AcuI CTGAAG 3 cut(s) 147, 243, 528
AcyI GRCGYC 1 cut(s) 920
AfaI GTAC 3 cut(s) 28, 268, 789
AfiI CCNNNNNNNGG 3 cut(s) 137, 326, 843
AgsI TTSAA 5 cut(s) 722, 863, 955, 1045, 1196
AhdI GACNNNNNGTC 1 cut(s) 639
AjnI CCWGG 3 cut(s) 130, 790, 1035
AloI GAACNNNNNNTCC 2 cut(s) 186, 218
AluBI AGCT 3 cut(s) 725, 832, 1021
AluI AGCT 3 cut(s) 725, 832, 1021
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 4 cut(s) 112, 345, 626, 1088
AlwI GGATC 5 cut(s) 22, 727, 878, 1176, 1219
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 5 cut(s) 98, 348, 487, 973, 1213
ApeKI GCWGC 4 cut(s) 22, 581, 695, 725
ApoI RAATTY 1 cut(s) 1206
AspLEI GCGC 2 cut(s) 130, 373
AspS9I GGNCC 4 cut(s) 33, 236, 488, 1213
AsuHPI GGTGA 3 cut(s) 398, 818, 826
AsuNHI GCTAGC 1 cut(s) 584
AvaI CYCGRG 1 cut(s) 37
AvaII GGWCC 2 cut(s) 33, 236
BaeI ACNNNNGTAYC 2 cut(s) 1073, 1106
BanII GRGCYC 2 cut(s) 68, 834
Bbv12I GWGCWC 1 cut(s) 834
BbvI GCAGC 4 cut(s) 34, 568, 707, 712
BccI CCATC 2 cut(s) 247, 403
BceAI ACGGC 2 cut(s) 194, 287
BcgI CGANNNNNNTGC 2 cut(s) 884, 918
BciT130I CCWGG 3 cut(s) 132, 792, 1037
BciVI GTATCC 1 cut(s) 746
BcoDI GTCTC 4 cut(s) 112, 345, 626, 1088
BfaI CTAG 5 cut(s) 189, 282, 555, 585, 909
BfuI GTATCC 1 cut(s) 746
BglII AGATCT 3 cut(s) 464, 530, 652
BisI GCNGC 4 cut(s) 23, 582, 696, 726
BlsI GCNGC 4 cut(s) 24, 583, 697, 727
Bme1390I CCNGG 3 cut(s) 132, 792, 1037
Bme18I GGWCC 2 cut(s) 33, 236
BmeRI GACNNNNNGTC 1 cut(s) 639
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 4 cut(s) 33, 236, 488, 1213
BmiI GGNNCC 3 cut(s) 34, 301, 1034
BmrFI CCNGG 3 cut(s) 132, 792, 1037
BmsI GCATC 3 cut(s) 221, 981, 1021
BmtI GCTAGC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 722
Bsa29I ATCGAT 1 cut(s) 1223
BsaHI GRCGYC 1 cut(s) 920
BsaJI CCNNGG 4 cut(s) 131, 226, 976, 1229
BsaWI WCCGGW 1 cut(s) 1100
BsaXI ACNNNNNCTCC 6 cut(s) 941, 971, 972, 1002, 1136, 1166
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 326, 843
Bse118I RCCGGY 1 cut(s) 971
Bse3DI GCAATG 1 cut(s) 17
BseBI CCWGG 3 cut(s) 132, 792, 1037
BseCI ATCGAT 1 cut(s) 1223
BseDI CCNNGG 4 cut(s) 131, 226, 976, 1229
BseGI GGATG 2 cut(s) 236, 612
BseLI CCNNNNNNNGG 3 cut(s) 137, 326, 843
BseMI GCAATG 1 cut(s) 17
BseMII CTCAG 3 cut(s) 356, 629, 1083
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 4 cut(s) 34, 568, 707, 712
Bsh1236I CGCG 2 cut(s) 1029, 1061
BshFI GGCC 5 cut(s) 100, 350, 489, 975, 1215
BshVI ATCGAT 1 cut(s) 1223
BsiHKAI GWGCWC 1 cut(s) 834
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 2 cut(s) 972, 1101
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 3 cut(s) 137, 326, 843
BsmAI GTCTC 4 cut(s) 112, 345, 626, 1088
BsmBI CGTCTC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 5 cut(s) 100, 350, 489, 975, 1215
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 68, 834
Bsp19I CCATGG 1 cut(s) 976
BspACI CCGC 3 cut(s) 234, 1029, 1061
BspANI GGCC 5 cut(s) 100, 350, 489, 975, 1215
BspCNI CTCAG 3 cut(s) 355, 630, 1084
BspDI ATCGAT 1 cut(s) 1223
BspFNI CGCG 2 cut(s) 1029, 1061
BspLI GGNNCC 3 cut(s) 34, 301, 1034
BspOI GCTAGC 1 cut(s) 588
BspPI GGATC 5 cut(s) 22, 727, 878, 1176, 1219
BspQI GCTCTTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 17
BsrFI RCCGGY 1 cut(s) 971
BssAI RCCGGY 1 cut(s) 971
BssECI CCNNGG 4 cut(s) 131, 226, 976, 1229
BssNI GRCGYC 1 cut(s) 920
BssT1I CCWWGG 3 cut(s) 226, 976, 1229
Bst2UI CCWGG 3 cut(s) 132, 792, 1037
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 920
BstC8I GCNNGC 3 cut(s) 247, 586, 903
BstDEI CTNAG 3 cut(s) 342, 638, 1092
BstDSI CCRYGG 1 cut(s) 976
BstF5I GGATG 2 cut(s) 236, 612
BstFNI CGCG 2 cut(s) 1029, 1061
BstHHI GCGC 2 cut(s) 130, 373
BstMAI GTCTC 4 cut(s) 112, 345, 626, 1088
BstMWI GCNNNNNNNGC 1 cut(s) 1018
BstNI CCWGG 3 cut(s) 132, 792, 1037
BstSCI CCNGG 3 cut(s) 130, 790, 1035
BstUI CGCG 2 cut(s) 1029, 1061
BstV1I GCAGC 4 cut(s) 34, 568, 707, 712
BstX2I RGATCY 4 cut(s) 464, 530, 652, 732
BstYI RGATCY 4 cut(s) 464, 530, 652, 732
Bsu15I ATCGAT 1 cut(s) 1223
BsuI GTATCC 1 cut(s) 746
BsuRI GGCC 5 cut(s) 100, 350, 489, 975, 1215
BsuTUI ATCGAT 1 cut(s) 1223
BtgI CCRYGG 1 cut(s) 976
BtgZI GCGATG 1 cut(s) 836
BtsCI GGATG 2 cut(s) 236, 612
BtsIMutI CAGTG 2 cut(s) 411, 635
Cac8I GCNNGC 3 cut(s) 247, 586, 903
CfoI GCGC 2 cut(s) 130, 373
Cfr10I RCCGGY 1 cut(s) 971
Cfr13I GGNCC 4 cut(s) 33, 236, 488, 1213
ClaI ATCGAT 1 cut(s) 1223
CseI GACGC 3 cut(s) 327, 909, 1067
CsiI ACCWGGT 1 cut(s) 790
Csp6I GTAC 3 cut(s) 27, 267, 788
CviAII CATG 7 cut(s) 47, 200, 293, 438, 947, 977, 1172
CviQI GTAC 3 cut(s) 27, 267, 788
DdeI CTNAG 3 cut(s) 342, 638, 1092
DriI GACNNNNNGTC 1 cut(s) 639
EaeI YGGCCR 1 cut(s) 973
Eam1104I CTCTTC 1 cut(s) 73
Eam1105I GACNNNNNGTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 832
Eco130I CCWWGG 3 cut(s) 226, 976, 1229
Eco24I GRGCYC 2 cut(s) 68, 834
Eco47I GGWCC 2 cut(s) 33, 236
Eco53kI GAGCTC 1 cut(s) 832
Eco57I CTGAAG 3 cut(s) 147, 243, 528
Eco88I CYCGRG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 832
EcoO109I RGGNCCY 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 1206
EcoRII CCWGG 3 cut(s) 130, 790, 1035
EcoT14I CCWWGG 3 cut(s) 226, 976, 1229
EcoT38I GRGCYC 2 cut(s) 68, 834
ErhI CCWWGG 3 cut(s) 226, 976, 1229
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 7 cut(s) 50, 203, 296, 441, 950, 980, 1175
FaqI GGGAC 1 cut(s) 188
FatI CATG 7 cut(s) 46, 199, 292, 437, 946, 976, 1171
FauI CCCGC 1 cut(s) 1022
Fnu4HI GCNGC 4 cut(s) 23, 582, 696, 726
FokI GGATG 2 cut(s) 243, 599
FriOI GRGCYC 2 cut(s) 68, 834
Fsp4HI GCNGC 4 cut(s) 23, 582, 696, 726
FspBI CTAG 5 cut(s) 189, 282, 555, 585, 909
GlaI GCGC 2 cut(s) 129, 372
GluI GCNGC 4 cut(s) 23, 582, 696, 726
HaeIII GGCC 5 cut(s) 100, 350, 489, 975, 1215
HapII CCGG 2 cut(s) 972, 1101
HgaI GACGC 3 cut(s) 327, 909, 1067
HhaI GCGC 2 cut(s) 130, 373
Hin1I GRCGYC 1 cut(s) 920
Hin1II CATG 7 cut(s) 50, 203, 296, 441, 950, 980, 1175
Hin6I GCGC 2 cut(s) 128, 371
HinP1I GCGC 2 cut(s) 128, 371
HinfI GANTC 5 cut(s) 105, 542, 640, 896, 1066
HpaII CCGG 2 cut(s) 972, 1101
HphI GGTGA 3 cut(s) 398, 818, 826
Hpy166II GTNNAC 3 cut(s) 140, 444, 1186
Hpy188I TCNGA 9 cut(s) 10, 178, 274, 537, 547, 617, 650, 705, 1093
Hpy188III TCNNGA 8 cut(s) 119, 215, 308, 344, 365, 664, 739, 1016
Hpy8I GTNNAC 3 cut(s) 140, 444, 1186
Hpy99I CGWCG 1 cut(s) 1061
HpyAV CCTTC 5 cut(s) 599, 683, 702, 857, 1150
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 5 cut(s) 22, 728, 905, 935, 994
HpyF10VI GCNNNNNNNGC 1 cut(s) 1018
HpyF3I CTNAG 3 cut(s) 342, 638, 1092
HpySE526I ACGT 1 cut(s) 756
Hsp92I GRCGYC 1 cut(s) 920
Hsp92II CATG 7 cut(s) 50, 203, 296, 441, 950, 980, 1175
HspAI GCGC 2 cut(s) 128, 371
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 299, 692
Lsp1109I GCAGC 4 cut(s) 34, 568, 707, 712
LweI GCATC 3 cut(s) 221, 981, 1021
MabI ACCWGGT 1 cut(s) 790
MaeI CTAG 5 cut(s) 189, 282, 555, 585, 909
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 8 cut(s) 81, 386, 593, 625, 806, 818, 846, 890
MboII GAAGA 3 cut(s) 60, 1057, 1119
MflI RGATCY 4 cut(s) 464, 530, 652, 732
MhlI GDGCHC 2 cut(s) 68, 834
MluCI AATT 3 cut(s) 572, 825, 1206
MlyI GAGTC 4 cut(s) 114, 536, 649, 905
MmeI TCCRAC 1 cut(s) 1108
MseI TTAA 3 cut(s) 381, 759, 1023
MspI CCGG 2 cut(s) 972, 1101
MspR9I CCNGG 3 cut(s) 132, 792, 1037
MvaI CCWGG 3 cut(s) 132, 792, 1037
MvnI CGCG 2 cut(s) 1029, 1061
MwoI GCNNNNNNNGC 1 cut(s) 1018
NcoI CCATGG 1 cut(s) 976
NheI GCTAGC 1 cut(s) 584
NlaIII CATG 7 cut(s) 50, 203, 296, 441, 950, 980, 1175
NlaIV GGNNCC 3 cut(s) 34, 301, 1034
NmuCI GTSAC 3 cut(s) 386, 625, 806
PaeR7I CTCGAG 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 73
PfeI GAWTC 1 cut(s) 1066
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 4 cut(s) 24, 583, 697, 727
PleI GAGTC 4 cut(s) 113, 536, 648, 904
PpsI GAGTC 4 cut(s) 113, 536, 648, 904
PpuMI RGGWCCY 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 834
Psp5II RGGWCCY 1 cut(s) 33
Psp6I CCWGG 3 cut(s) 130, 790, 1035
PspGI CCWGG 3 cut(s) 130, 790, 1035
PspN4I GGNNCC 3 cut(s) 34, 301, 1034
PspPI GGNCC 4 cut(s) 33, 236, 488, 1213
PspPPI RGGWCCY 1 cut(s) 33
PspXI VCTCGAGB 1 cut(s) 37
PsrI GAACNNNNNNTAC 2 cut(s) 288, 320
PsuI RGATCY 4 cut(s) 464, 530, 652, 732
RsaI GTAC 3 cut(s) 28, 268, 789
RsaNI GTAC 3 cut(s) 27, 267, 788
SacI GAGCTC 1 cut(s) 834
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 381, 759, 1023
SatI GCNGC 4 cut(s) 23, 582, 696, 726
Sau96I GGNCC 4 cut(s) 33, 236, 488, 1213
SchI GAGTC 4 cut(s) 114, 536, 649, 905
ScrFI CCNGG 3 cut(s) 132, 792, 1037
SduI GDGCHC 2 cut(s) 68, 834
SexAI ACCWGGT 1 cut(s) 790
SfaNI GCATC 3 cut(s) 221, 981, 1021
Sfr274I CTCGAG 1 cut(s) 37
SinI GGWCC 2 cut(s) 33, 236
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 37, 737
SmoI CTYRAG 2 cut(s) 37, 737
Sse9I AATT 3 cut(s) 572, 825, 1206
SsiI CCGC 3 cut(s) 234, 1029, 1061
SspMI CTAG 5 cut(s) 189, 282, 555, 585, 909
SstI GAGCTC 1 cut(s) 834
StyD4I CCNGG 3 cut(s) 130, 790, 1035
StyI CCWWGG 3 cut(s) 226, 976, 1229
TaiI ACGT 1 cut(s) 759
TaqI TCGA 7 cut(s) 38, 307, 364, 663, 873, 1056, 1223
TasI AATT 3 cut(s) 572, 825, 1206
TfiI GAWTC 1 cut(s) 1066
Tru1I TTAA 3 cut(s) 381, 759, 1023
Tru9I TTAA 3 cut(s) 381, 759, 1023
TscAI CASTG 2 cut(s) 418, 642
TseFI GTSAC 3 cut(s) 386, 625, 806
TseI GCWGC 4 cut(s) 22, 581, 695, 725
Tsp45I GTSAC 3 cut(s) 386, 625, 806
TspDTI ATGAA 1 cut(s) 426
TspRI CASTG 2 cut(s) 418, 642
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 33, 236
XapI RAATTY 1 cut(s) 1206
XcmI CCANNNNNNNNNTGG 1 cut(s) 863
XhoI CTCGAG 1 cut(s) 37
XspI CTAG 5 cut(s) 189, 282, 555, 585, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.