histone-lysine N-methyltransferase, H3 lysine-9 specific
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 396 - 540 | 1.4e-50 | SAD/SRA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 19 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 407 |
| AccII | CGCG | 1 cut(s) | 625 |
| AciI | CCGC | 4 cut(s) | 17, 23, 657, 1261 |
| AclWI | GGATC | 2 cut(s) | 1135, 1480 |
| AcoI | YGGCCR | 1 cut(s) | 1381 |
| AcsI | RAATTY | 5 cut(s) | 552, 743, 1104, 1220, 1363 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 73, 407, 965, 1271 |
| AflIII | ACRYGT | 1 cut(s) | 1500 |
| AgsI | TTSAA | 8 cut(s) | 533, 616, 981, 1226, 1433, 1507, 1594, 1616 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 441 |
| AjnI | CCWGG | 2 cut(s) | 431, 1383 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 780, 812 |
| AluBI | AGCT | 8 cut(s) | 383, 621, 770, 1063, 1193, 1306, 1429, 1585 |
| AluI | AGCT | 8 cut(s) | 383, 621, 770, 1063, 1193, 1306, 1429, 1585 |
| Alw26I | GTCTC | 2 cut(s) | 160, 208 |
| AlwI | GGATC | 2 cut(s) | 1135, 1480 |
| Ama87I | CYCGRG | 1 cut(s) | 1198 |
| AoxI | GGCC | 4 cut(s) | 429, 1252, 1381, 1571 |
| ApeKI | GCWGC | 2 cut(s) | 419, 984 |
| ApoI | RAATTY | 5 cut(s) | 552, 743, 1104, 1220, 1363 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 90 |
| AspS9I | GGNCC | 5 cut(s) | 188, 306, 332, 968, 1571 |
| AsuC2I | CCSGG | 3 cut(s) | 389, 1199, 1200 |
| AsuHPI | GGTGA | 5 cut(s) | 119, 123, 1033, 1103, 1226 |
| AvaI | CYCGRG | 1 cut(s) | 1198 |
| AvaII | GGWCC | 4 cut(s) | 188, 306, 332, 968 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 300, 333 |
| BanI | GGYRCC | 1 cut(s) | 19 |
| BbsI | GAAGAC | 1 cut(s) | 1623 |
| BbvI | GCAGC | 2 cut(s) | 406, 996 |
| BccI | CCATC | 6 cut(s) | 296, 603, 658, 872, 941, 1526 |
| BciT130I | CCWGG | 2 cut(s) | 433, 1385 |
| BciVI | GTATCC | 2 cut(s) | 369, 1021 |
| BclI | TGATCA | 1 cut(s) | 916 |
| BcnI | CCSGG | 3 cut(s) | 389, 1199, 1200 |
| BcoDI | GTCTC | 2 cut(s) | 160, 208 |
| BfaI | CTAG | 1 cut(s) | 972 |
| BfmI | CTRYAG | 1 cut(s) | 828 |
| BfuI | GTATCC | 2 cut(s) | 369, 1021 |
| BglII | AGATCT | 1 cut(s) | 758 |
| BisI | GCNGC | 4 cut(s) | 23, 420, 658, 985 |
| BlsI | GCNGC | 4 cut(s) | 24, 421, 659, 986 |
| Bme1390I | CCNGG | 5 cut(s) | 389, 433, 1199, 1200, 1385 |
| Bme18I | GGWCC | 4 cut(s) | 188, 306, 332, 968 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 441 |
| BmeT110I | CYCGRG | 1 cut(s) | 1198 |
| BmgT120I | GGNCC | 5 cut(s) | 188, 306, 332, 968, 1571 |
| BmiI | GGNNCC | 4 cut(s) | 21, 307, 1495, 1572 |
| BmrFI | CCNGG | 5 cut(s) | 389, 433, 1199, 1200, 1385 |
| BmsI | GCATC | 5 cut(s) | 41, 482, 686, 941, 1337 |
| BoxI | GACNNNNGTC | 2 cut(s) | 330, 1523 |
| BpiI | GAAGAC | 1 cut(s) | 1623 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1224, 1256 |
| BpuEI | CTTGAG | 2 cut(s) | 914, 1401 |
| BpuMI | CCSGG | 3 cut(s) | 389, 1199, 1200 |
| BsaI | GGTCTC | 1 cut(s) | 208 |
| BsaJI | CCNNGG | 6 cut(s) | 96, 683, 1198, 1270, 1384, 1489 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1194, 1224, 1380, 1410 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 73, 407, 965, 1271 |
| Bse118I | RCCGGY | 1 cut(s) | 1379 |
| Bse1I | ACTGG | 1 cut(s) | 1317 |
| Bse3DI | GCAATG | 1 cut(s) | 1031 |
| BseBI | CCWGG | 2 cut(s) | 433, 1385 |
| BseDI | CCNNGG | 6 cut(s) | 96, 683, 1198, 1270, 1384, 1489 |
| BseGI | GGATG | 3 cut(s) | 701, 883, 904 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 73, 407, 965, 1271 |
| BseMI | GCAATG | 1 cut(s) | 1031 |
| BseMII | CTCAG | 3 cut(s) | 86, 126, 212 |
| BseNI | ACTGG | 1 cut(s) | 1317 |
| BseRI | GAGGAG | 2 cut(s) | 948, 1113 |
| BseXI | GCAGC | 2 cut(s) | 406, 996 |
| Bsh1236I | CGCG | 1 cut(s) | 625 |
| BshFI | GGCC | 4 cut(s) | 431, 1254, 1383, 1573 |
| BshNI | GGYRCC | 1 cut(s) | 19 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1198 |
| BsiSI | CCGG | 3 cut(s) | 388, 1199, 1380 |
| BslFI | GGGAC | 3 cut(s) | 404, 536, 1181 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 73, 407, 965, 1271 |
| BsmAI | GTCTC | 2 cut(s) | 160, 208 |
| BsmFI | GGGAC | 3 cut(s) | 404, 536, 1181 |
| BsnI | GGCC | 4 cut(s) | 431, 1254, 1383, 1573 |
| Bso31I | GGTCTC | 1 cut(s) | 208 |
| BsoBI | CYCGRG | 1 cut(s) | 1198 |
| Bsp143I | GATC | 6 cut(s) | 758, 916, 1140, 1371, 1420, 1485 |
| Bsp19I | CCATGG | 2 cut(s) | 96, 683 |
| Bsp68I | TCGCGA | 1 cut(s) | 625 |
| BspACI | CCGC | 4 cut(s) | 17, 23, 657, 1261 |
| BspANI | GGCC | 4 cut(s) | 431, 1254, 1383, 1573 |
| BspCNI | CTCAG | 3 cut(s) | 85, 127, 211 |
| BspFNI | CGCG | 1 cut(s) | 625 |
| BspHI | TCATGA | 1 cut(s) | 994 |
| BspLI | GGNNCC | 4 cut(s) | 21, 307, 1495, 1572 |
| BspPI | GGATC | 2 cut(s) | 1135, 1480 |
| BspT107I | GGYRCC | 1 cut(s) | 19 |
| BspTNI | GGTCTC | 1 cut(s) | 208 |
| BsrDI | GCAATG | 1 cut(s) | 1031 |
| BsrFI | RCCGGY | 1 cut(s) | 1379 |
| BsrI | ACTGG | 1 cut(s) | 1317 |
| BssAI | RCCGGY | 1 cut(s) | 1379 |
| BssECI | CCNNGG | 6 cut(s) | 96, 683, 1198, 1270, 1384, 1489 |
| BssMI | GATC | 6 cut(s) | 758, 916, 1140, 1371, 1420, 1485 |
| BssT1I | CCWWGG | 3 cut(s) | 96, 683, 1270 |
| Bst2UI | CCWGG | 2 cut(s) | 433, 1385 |
| Bst4CI | ACNGT | 2 cut(s) | 824, 1009 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstC8I | GCNNGC | 3 cut(s) | 623, 701, 772 |
| BstDEI | CTNAG | 4 cut(s) | 72, 126, 135, 198 |
| BstDSI | CCRYGG | 3 cut(s) | 96, 683, 1489 |
| BstF5I | GGATG | 3 cut(s) | 701, 883, 904 |
| BstFNI | CGCG | 1 cut(s) | 625 |
| BstKTI | GATC | 6 cut(s) | 761, 919, 1143, 1374, 1423, 1488 |
| BstMAI | GTCTC | 2 cut(s) | 160, 208 |
| BstMBI | GATC | 6 cut(s) | 758, 916, 1140, 1371, 1420, 1485 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 428, 776, 1260 |
| BstNI | CCWGG | 2 cut(s) | 433, 1385 |
| BstNSI | RCATGY | 1 cut(s) | 1504 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 330, 1523 |
| BstSCI | CCNGG | 5 cut(s) | 387, 431, 1197, 1198, 1383 |
| BstSFI | CTRYAG | 1 cut(s) | 828 |
| BstUI | CGCG | 1 cut(s) | 625 |
| BstV1I | GCAGC | 2 cut(s) | 406, 996 |
| BstV2I | GAAGAC | 1 cut(s) | 1623 |
| BstX2I | RGATCY | 2 cut(s) | 758, 1140 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 439, 947 |
| BstYI | RGATCY | 2 cut(s) | 758, 1140 |
| BsuI | GTATCC | 2 cut(s) | 369, 1021 |
| BsuRI | GGCC | 4 cut(s) | 431, 1254, 1383, 1573 |
| BtgI | CCRYGG | 3 cut(s) | 96, 683, 1489 |
| BtsCI | GGATG | 3 cut(s) | 701, 883, 904 |
| BtsI | GCAGTG | 1 cut(s) | 293 |
| BtsIMutI | CAGTG | 3 cut(s) | 293, 540, 730 |
| BtuMI | TCGCGA | 1 cut(s) | 625 |
| Cac8I | GCNNGC | 3 cut(s) | 623, 701, 772 |
| CciI | TCATGA | 1 cut(s) | 994 |
| Cfr10I | RCCGGY | 1 cut(s) | 1379 |
| Cfr13I | GGNCC | 5 cut(s) | 188, 306, 332, 968, 1571 |
| Cfr9I | CCCGGG | 1 cut(s) | 1198 |
| DdeI | CTNAG | 4 cut(s) | 72, 126, 135, 198 |
| DpnI | GATC | 6 cut(s) | 760, 918, 1142, 1373, 1422, 1487 |
| DpnII | GATC | 6 cut(s) | 758, 916, 1140, 1371, 1420, 1485 |
| DraI | TTTAAA | 1 cut(s) | 1452 |
| DriI | GACNNNNNGTC | 1 cut(s) | 441 |
| EaeI | YGGCCR | 1 cut(s) | 1381 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 441 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| Eco130I | CCWWGG | 3 cut(s) | 96, 683, 1270 |
| Eco31I | GGTCTC | 1 cut(s) | 208 |
| Eco47I | GGWCC | 4 cut(s) | 188, 306, 332, 968 |
| Eco88I | CYCGRG | 1 cut(s) | 1198 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1571 |
| EcoRI | GAATTC | 1 cut(s) | 1363 |
| EcoRII | CCWGG | 2 cut(s) | 431, 1383 |
| EcoT14I | CCWWGG | 3 cut(s) | 96, 683, 1270 |
| ErhI | CCWWGG | 3 cut(s) | 96, 683, 1270 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1352, 1384 |
| FaqI | GGGAC | 3 cut(s) | 404, 536, 1181 |
| FauNDI | CATATG | 2 cut(s) | 193, 1522 |
| FbaI | TGATCA | 1 cut(s) | 916 |
| Fnu4HI | GCNGC | 4 cut(s) | 23, 420, 658, 985 |
| FokI | GGATG | 3 cut(s) | 708, 890, 911 |
| Fsp4HI | GCNGC | 4 cut(s) | 23, 420, 658, 985 |
| FspBI | CTAG | 1 cut(s) | 972 |
| GluI | GCNGC | 4 cut(s) | 23, 420, 658, 985 |
| HaeIII | GGCC | 4 cut(s) | 431, 1254, 1383, 1573 |
| HapII | CCGG | 3 cut(s) | 388, 1199, 1380 |
| HindIII | AAGCTT | 2 cut(s) | 1427, 1583 |
| HinfI | GANTC | 3 cut(s) | 153, 788, 1536 |
| HpaII | CCGG | 3 cut(s) | 388, 1199, 1380 |
| HphI | GGTGA | 5 cut(s) | 119, 123, 1033, 1103, 1226 |
| Hpy166II | GTNNAC | 2 cut(s) | 188, 309 |
| Hpy188I | TCNGA | 7 cut(s) | 793, 813, 1013, 1046, 1425, 1481, 1602 |
| Hpy188III | TCNNGA | 9 cut(s) | 54, 74, 167, 347, 624, 893, 995, 1173, 1418 |
| Hpy8I | GTNNAC | 2 cut(s) | 188, 309 |
| Hpy99I | CGWCG | 1 cut(s) | 369 |
| HpyAV | CCTTC | 3 cut(s) | 78, 1018, 1110 |
| HpyCH4III | ACNGT | 2 cut(s) | 824, 1009 |
| HpyCH4V | TGCA | 7 cut(s) | 601, 699, 774, 1069, 1313, 1328, 1465 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 428, 776, 1260 |
| HpyF3I | CTNAG | 4 cut(s) | 72, 126, 135, 198 |
| Ksp22I | TGATCA | 1 cut(s) | 916 |
| Kzo9I | GATC | 6 cut(s) | 758, 916, 1140, 1371, 1420, 1485 |
| LmnI | GCTCC | 4 cut(s) | 100, 1190, 1311, 1499 |
| Lsp1109I | GCAGC | 2 cut(s) | 406, 996 |
| LweI | GCATC | 5 cut(s) | 41, 482, 686, 941, 1337 |
| MaeI | CTAG | 1 cut(s) | 972 |
| MaeIII | GTNAC | 3 cut(s) | 51, 129, 464 |
| MalI | GATC | 6 cut(s) | 760, 918, 1142, 1373, 1422, 1487 |
| MboI | GATC | 6 cut(s) | 758, 916, 1140, 1371, 1420, 1485 |
| MboII | GAAGA | 8 cut(s) | 266, 617, 620, 700, 826, 829, 1088, 1628 |
| MflI | RGATCY | 2 cut(s) | 758, 1140 |
| MluCI | AATT | 9 cut(s) | 283, 516, 552, 676, 743, 795, 1104, 1220, 1363 |
| MlyI | GAGTC | 2 cut(s) | 162, 1530 |
| MmeI | TCCRAC | 2 cut(s) | 255, 1521 |
| MroXI | GAANNNNTTC | 1 cut(s) | 90 |
| MseI | TTAA | 4 cut(s) | 141, 203, 1451, 1623 |
| MslI | CAYNNNNRTG | 3 cut(s) | 600, 918, 945 |
| MspA1I | CMGCKG | 1 cut(s) | 25 |
| MspI | CCGG | 3 cut(s) | 388, 1199, 1380 |
| MspR9I | CCNGG | 5 cut(s) | 389, 433, 1199, 1200, 1385 |
| MvaI | CCWGG | 2 cut(s) | 433, 1385 |
| MvnI | CGCG | 1 cut(s) | 625 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 428, 776, 1260 |
| NciI | CCSGG | 3 cut(s) | 389, 1199, 1200 |
| NcoI | CCATGG | 2 cut(s) | 96, 683 |
| NdeI | CATATG | 2 cut(s) | 193, 1522 |
| NdeII | GATC | 6 cut(s) | 758, 916, 1140, 1371, 1420, 1485 |
| NlaIV | GGNNCC | 4 cut(s) | 21, 307, 1495, 1572 |
| NmuCI | GTSAC | 2 cut(s) | 51, 129 |
| NruI | TCGCGA | 1 cut(s) | 625 |
| NspI | RCATGY | 1 cut(s) | 1504 |
| PagI | TCATGA | 1 cut(s) | 994 |
| PciI | ACATGT | 1 cut(s) | 1500 |
| PdmI | GAANNNNTTC | 1 cut(s) | 90 |
| PfeI | GAWTC | 1 cut(s) | 788 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 407 |
| PfoI | TCCNGGA | 1 cut(s) | 387 |
| PkrI | GCNGC | 4 cut(s) | 24, 421, 659, 986 |
| PleI | GAGTC | 2 cut(s) | 161, 1530 |
| PpsI | GAGTC | 2 cut(s) | 161, 1530 |
| PscI | ACATGT | 1 cut(s) | 1500 |
| PshAI | GACNNNNGTC | 2 cut(s) | 330, 1523 |
| Psp6I | CCWGG | 2 cut(s) | 431, 1383 |
| PspGI | CCWGG | 2 cut(s) | 431, 1383 |
| PspN4I | GGNNCC | 4 cut(s) | 21, 307, 1495, 1572 |
| PspPI | GGNCC | 5 cut(s) | 188, 306, 332, 968, 1571 |
| PsuI | RGATCY | 2 cut(s) | 758, 1140 |
| RruI | TCGCGA | 1 cut(s) | 625 |
| RseI | CAYNNNNRTG | 3 cut(s) | 600, 918, 945 |
| SaqAI | TTAA | 4 cut(s) | 141, 203, 1451, 1623 |
| SatI | GCNGC | 4 cut(s) | 23, 420, 658, 985 |
| Sau3AI | GATC | 6 cut(s) | 758, 916, 1140, 1371, 1420, 1485 |
| Sau96I | GGNCC | 5 cut(s) | 188, 306, 332, 968, 1571 |
| SchI | GAGTC | 2 cut(s) | 162, 1530 |
| ScrFI | CCNGG | 5 cut(s) | 389, 433, 1199, 1200, 1385 |
| SfaNI | GCATC | 5 cut(s) | 41, 482, 686, 941, 1337 |
| SfcI | CTRYAG | 1 cut(s) | 828 |
| SinI | GGWCC | 4 cut(s) | 188, 306, 332, 968 |
| SmaI | CCCGGG | 1 cut(s) | 1200 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 600, 918, 945 |
| SmlI | CTYRAG | 2 cut(s) | 893, 1416 |
| SmoI | CTYRAG | 2 cut(s) | 893, 1416 |
| Sse9I | AATT | 9 cut(s) | 283, 516, 552, 676, 743, 795, 1104, 1220, 1363 |
| SsiI | CCGC | 4 cut(s) | 17, 23, 657, 1261 |
| SspI | AATATT | 1 cut(s) | 1556 |
| SspMI | CTAG | 1 cut(s) | 972 |
| StyD4I | CCNGG | 5 cut(s) | 387, 431, 1197, 1198, 1383 |
| StyI | CCWWGG | 3 cut(s) | 96, 683, 1270 |
| TaaI | ACNGT | 2 cut(s) | 824, 1009 |
| TaqI | TCGA | 1 cut(s) | 367 |
| TasI | AATT | 9 cut(s) | 283, 516, 552, 676, 743, 795, 1104, 1220, 1363 |
| TauI | GCSGC | 2 cut(s) | 25, 660 |
| TfiI | GAWTC | 1 cut(s) | 788 |
| Tru1I | TTAA | 4 cut(s) | 141, 203, 1451, 1623 |
| Tru9I | TTAA | 4 cut(s) | 141, 203, 1451, 1623 |
| TscAI | CASTG | 3 cut(s) | 300, 547, 730 |
| TseFI | GTSAC | 2 cut(s) | 51, 129 |
| TseI | GCWGC | 2 cut(s) | 419, 984 |
| Tsp45I | GTSAC | 2 cut(s) | 51, 129 |
| TspDTI | ATGAA | 8 cut(s) | 618, 660, 801, 918, 1065, 1343, 1415, 1619 |
| TspGWI | ACGGA | 1 cut(s) | 1478 |
| TspMI | CCCGGG | 1 cut(s) | 1198 |
| TspRI | CASTG | 3 cut(s) | 300, 547, 730 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 407 |
| VpaK11BI | GGWCC | 4 cut(s) | 188, 306, 332, 968 |
| XapI | RAATTY | 5 cut(s) | 552, 743, 1104, 1220, 1363 |
| XceI | RCATGY | 1 cut(s) | 1504 |
| XmaI | CCCGGG | 1 cut(s) | 1198 |
| XmnI | GAANNNNTTC | 1 cut(s) | 90 |
| XspI | CTAG | 1 cut(s) | 972 |