Rh7CG231600

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000355
Physical Location & Seq
Reverse (-)
21643949 .. 21647807
3859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG231600.1

Sequence Viewer

Length: 1179 bp
ATGTTTCTCATGGAAAATAGTGAGTGTTTTTCCCATACCAACTTGCCAGAGTATAAGAAGTGTAGAGTCTCGGCTGTTCGTGATTATCCTTTAGGGTGTGGACCATTTGCTCACTTGAGTAATTTGAATGCCAATGCTACGGACAAGAAATATCTTCCTCAATCAGTAGAAGCTGTTCGAGATTTTCCTCCTTTCTGTGGGATAAATGCTTCTCCTGAGGCCAGGAAATTCGGCCAAGAGAAGTCAGTTAGGGATTACAAGTCATCATCATCAAAGACAGTGAAGACTAATGTGAAACAAACAGGACTTGGGAACAAATTTCAACCTAACACTGAGAAGAAAATTGGAGGAAAGTCTCTAAAGAAGAATCATCATGTACCAGTAAGGGCTGCTTGTCAAGGTACAATTCAACTTGATATAAGGAAGAAGGAGTATTATCAGCATGATGAAGAAGAACACAATCATGTGATTCCAAAATCATGGAGTACAGATGGGTGCCCTCCTCCTTTTGGTTGTAGTAGTTCAAGCCGCAGAAGTCATGATAATGACACAACTGAGAGAAACAAGGTAAAGGAGATATTGCATATGTTCCAAGATGAATGTGTAAAGCTCTTGCTGGAGGAAGAACATAAAAGATCAAAGGGAGGAGGAACTTCTCTCCGAAGGGTTGATTTGGAAGCCTTTAAGATCCTCAAGGATAGAGGAATCTTTGTAAAATCAGGCAAACATGTCATAGGAGATATCCCAGGAGTTGAAGTTGGTGATAAGTTTCAATACCGAGTGGAACTTATCCTTATTGGCCTACATCACCAGATTCAAGGTGGTATAGCTTATGGGAACTTCGGTGGTAAGGTCCTTGCAACCAGTATCGTTGCATCTGGTGGCTATGCAGATGATTTGCATAGTAAGGATTCGTTGATCTATACTGGCCAGGGAGGAAATGCAAAGAATACAAAGGGCCCTCAAGATCAGAAGCTTGAACGGGGAAATCTTGCTTTAAAGAATAGTGTGCAAAAGAACCCTGTCAGAGTGATCCGTGGCTCCGAACTATTGGATGGAAGCAGGACATATGTCTATGATGGACTATATTTGGTAGAGAAATATTGGCAGGAAAGGGGGCCTCTTGGTAAGCTTGTTTTCAAGTTTCAGATGAACAGAATTGGAGGCACTGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

392

Amino Acids

43.76

Weight (kDa)

9.37

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 245 - 389 2.1e-49 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 495
AciI CCGC 1 cut(s) 529
AclWI GGATC 2 cut(s) 682, 1027
AcoI YGGCCR 2 cut(s) 232, 928
AcsI RAATTY 2 cut(s) 227, 317
AfaI GTAC 3 cut(s) 378, 403, 487
AfiI CCNNNNNNNGG 2 cut(s) 197, 509
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 9 cut(s) 127, 323, 410, 525, 755, 773, 818, 980, 1141
AjnI CCWGG 3 cut(s) 221, 745, 930
AluBI AGCT 5 cut(s) 173, 610, 830, 976, 1132
AluI AGCT 5 cut(s) 173, 610, 830, 976, 1132
Alw26I GTCTC 2 cut(s) 73, 360
AlwI GGATC 2 cut(s) 682, 1027
AoxI GGCC 6 cut(s) 219, 232, 799, 928, 958, 1118
ApaI GGGCCC 1 cut(s) 962
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 2 cut(s) 227, 317
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 5 cut(s) 101, 853, 958, 959, 1118
AsuHPI GGTGA 2 cut(s) 773, 800
AvaII GGWCC 2 cut(s) 101, 853
AxyI CCTNAGG 1 cut(s) 216
BaeGI GKGCMC 2 cut(s) 500, 962
BalI TGGCCA 1 cut(s) 930
BanI GGYRCC 1 cut(s) 495
BanII GRGCYC 1 cut(s) 962
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 376
BccI CCATC 3 cut(s) 485, 1049, 1073
BciT130I CCWGG 3 cut(s) 223, 747, 932
BcoDI GTCTC 2 cut(s) 73, 360
BisI GCNGC 2 cut(s) 390, 529
BlsI GCNGC 2 cut(s) 391, 530
Bme1390I CCNGG 3 cut(s) 223, 747, 932
Bme18I GGWCC 2 cut(s) 101, 853
BmgT120I GGNCC 5 cut(s) 101, 853, 958, 959, 1118
BmiI GGNNCC 4 cut(s) 497, 960, 1042, 1119
BmrFI CCNGG 3 cut(s) 223, 747, 932
BmsI GCATC 1 cut(s) 884
BoxI GACNNNNGTC 1 cut(s) 1070
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 638
BpuEI CTTGAG 3 cut(s) 136, 677, 948
BsaJI CCNNGG 3 cut(s) 745, 931, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 509
Bse1I ACTGG 4 cut(s) 380, 864, 931, 1174
Bse21I CCTNAGG 1 cut(s) 216
BseBI CCWGG 3 cut(s) 223, 747, 932
BseDI CCNNGG 3 cut(s) 745, 931, 1036
BseGI GGATG 1 cut(s) 1060
BseLI CCNNNNNNNGG 2 cut(s) 197, 509
BseMII CTCAG 3 cut(s) 207, 324, 546
BseNI ACTGG 4 cut(s) 380, 864, 931, 1174
BseRI GAGGAG 2 cut(s) 492, 660
BseSI GKGCMC 2 cut(s) 500, 962
BseXI GCAGC 1 cut(s) 376
BshFI GGCC 6 cut(s) 221, 234, 801, 930, 960, 1120
BshNI GGYRCC 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 197, 509
BsmAI GTCTC 2 cut(s) 73, 360
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 6 cut(s) 221, 234, 801, 930, 960, 1120
Bsp120I GGGCCC 1 cut(s) 958
Bsp1286I GDGCHC 2 cut(s) 500, 962
Bsp143I GATC 5 cut(s) 635, 687, 918, 967, 1032
BspACI CCGC 1 cut(s) 529
BspANI GGCC 6 cut(s) 221, 234, 801, 930, 960, 1120
BspCNI CTCAG 3 cut(s) 208, 325, 547
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 4 cut(s) 497, 960, 1042, 1119
BspPI GGATC 2 cut(s) 682, 1027
BspT107I GGYRCC 1 cut(s) 495
BsrI ACTGG 4 cut(s) 380, 864, 931, 1174
BssECI CCNNGG 3 cut(s) 745, 931, 1036
BssMI GATC 5 cut(s) 635, 687, 918, 967, 1032
Bst2UI CCWGG 3 cut(s) 223, 747, 932
Bst4CI ACNGT 1 cut(s) 280
BstDEI CTNAG 3 cut(s) 216, 333, 555
BstDSI CCRYGG 1 cut(s) 1036
BstF5I GGATG 1 cut(s) 1060
BstKTI GATC 5 cut(s) 638, 690, 921, 970, 1035
BstMAI GTCTC 2 cut(s) 73, 360
BstMBI GATC 5 cut(s) 635, 687, 918, 967, 1032
BstNI CCWGG 3 cut(s) 223, 747, 932
BstNSI RCATGY 1 cut(s) 731
BstPAI GACNNNNGTC 1 cut(s) 1070
BstSCI CCNGG 3 cut(s) 221, 745, 930
BstSLI GKGCMC 2 cut(s) 500, 962
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 687
BstXI CCANNNNNNTGG 1 cut(s) 480
BstYI RGATCY 1 cut(s) 687
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 6 cut(s) 221, 234, 801, 930, 960, 1120
BtgI CCRYGG 1 cut(s) 1036
BtsCI GGATG 1 cut(s) 1060
BtsIMutI CAGTG 3 cut(s) 285, 330, 1167
CciI TCATGA 1 cut(s) 538
Cfr13I GGNCC 5 cut(s) 101, 853, 958, 959, 1118
Csp6I GTAC 3 cut(s) 377, 402, 486
CviAII CATG 7 cut(s) 10, 374, 443, 464, 480, 539, 728
CviQI GTAC 3 cut(s) 377, 402, 486
DdeI CTNAG 3 cut(s) 216, 333, 555
DpnI GATC 5 cut(s) 637, 689, 920, 969, 1034
DpnII GATC 5 cut(s) 635, 687, 918, 967, 1032
DraI TTTAAA 1 cut(s) 999
EaeI YGGCCR 2 cut(s) 232, 928
Eco24I GRGCYC 1 cut(s) 962
Eco32I GATATC 1 cut(s) 742
Eco47I GGWCC 2 cut(s) 101, 853
Eco81I CCTNAGG 1 cut(s) 216
EcoO109I RGGNCCY 4 cut(s) 853, 958, 959, 1118
EcoRII CCWGG 3 cut(s) 221, 745, 930
EcoRV GATATC 1 cut(s) 742
EcoT38I GRGCYC 1 cut(s) 962
FaeI CATG 7 cut(s) 13, 377, 446, 467, 483, 542, 731
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FatI CATG 7 cut(s) 9, 373, 442, 463, 479, 538, 727
FauNDI CATATG 2 cut(s) 585, 1069
Fnu4HI GCNGC 2 cut(s) 390, 529
FokI GGATG 1 cut(s) 1067
FriOI GRGCYC 1 cut(s) 962
Fsp4HI GCNGC 2 cut(s) 390, 529
GluI GCNGC 2 cut(s) 390, 529
GsuI CTGGAG 1 cut(s) 638
HaeIII GGCC 6 cut(s) 221, 234, 801, 930, 960, 1120
Hin1II CATG 7 cut(s) 13, 377, 446, 467, 483, 542, 731
HindIII AAGCTT 2 cut(s) 974, 1130
HinfI GANTC 6 cut(s) 66, 367, 469, 705, 814, 911
HphI GGTGA 2 cut(s) 773, 800
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 5 cut(s) 662, 972, 1028, 1045, 1149
Hpy188III TCNNGA 5 cut(s) 80, 179, 215, 539, 965
Hpy8I GTNNAC 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 421, 657
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 7 cut(s) 583, 860, 875, 890, 901, 944, 1012
HpyF3I CTNAG 3 cut(s) 216, 333, 555
Hsp92II CATG 7 cut(s) 13, 377, 446, 467, 483, 542, 731
Kzo9I GATC 5 cut(s) 635, 687, 918, 967, 1032
LmnI GCTCC 1 cut(s) 1046
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 884
MalI GATC 5 cut(s) 637, 689, 920, 969, 1034
MboI GATC 5 cut(s) 635, 687, 918, 967, 1032
MboII GAAGA 8 cut(s) 146, 295, 349, 376, 436, 461, 464, 635
MflI RGATCY 1 cut(s) 687
MhlI GDGCHC 2 cut(s) 500, 962
MlsI TGGCCA 1 cut(s) 930
MluCI AATT 6 cut(s) 121, 227, 317, 342, 405, 1158
MluNI TGGCCA 1 cut(s) 930
MlyI GAGTC 1 cut(s) 75
Mox20I TGGCCA 1 cut(s) 930
MroXI GAANNNNTTC 1 cut(s) 174
MscI TGGCCA 1 cut(s) 930
MseI TTAA 2 cut(s) 684, 998
MslI CAYNNNNRTG 2 cut(s) 462, 543
Msp20I TGGCCA 1 cut(s) 930
MspR9I CCNGG 3 cut(s) 223, 747, 932
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 3 cut(s) 223, 747, 932
NdeI CATATG 2 cut(s) 585, 1069
NdeII GATC 5 cut(s) 635, 687, 918, 967, 1032
NlaIII CATG 7 cut(s) 13, 377, 446, 467, 483, 542, 731
NlaIV GGNNCC 4 cut(s) 497, 960, 1042, 1119
NmeAIII GCCGAG 1 cut(s) 50
NspI RCATGY 1 cut(s) 731
PagI TCATGA 1 cut(s) 538
PciI ACATGT 1 cut(s) 727
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 5 cut(s) 367, 469, 705, 814, 911
PkrI GCNGC 2 cut(s) 391, 530
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 853
PscI ACATGT 1 cut(s) 727
PshAI GACNNNNGTC 1 cut(s) 1070
Psp5II RGGWCCY 1 cut(s) 853
Psp6I CCWGG 3 cut(s) 221, 745, 930
PspGI CCWGG 3 cut(s) 221, 745, 930
PspN4I GGNNCC 4 cut(s) 497, 960, 1042, 1119
PspOMI GGGCCC 1 cut(s) 958
PspPI GGNCC 5 cut(s) 101, 853, 958, 959, 1118
PspPPI RGGWCCY 1 cut(s) 853
PsrI GAACNNNNNNTAC 2 cut(s) 159, 191
PsuI RGATCY 1 cut(s) 687
RsaI GTAC 3 cut(s) 378, 403, 487
RsaNI GTAC 3 cut(s) 377, 402, 486
RseI CAYNNNNRTG 2 cut(s) 462, 543
SaqAI TTAA 2 cut(s) 684, 998
SatI GCNGC 2 cut(s) 390, 529
Sau3AI GATC 5 cut(s) 635, 687, 918, 967, 1032
Sau96I GGNCC 5 cut(s) 101, 853, 958, 959, 1118
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 3 cut(s) 223, 747, 932
SduI GDGCHC 2 cut(s) 500, 962
SfaNI GCATC 1 cut(s) 884
SinI GGWCC 2 cut(s) 101, 853
SmiMI CAYNNNNRTG 2 cut(s) 462, 543
SmlI CTYRAG 3 cut(s) 115, 692, 963
SmoI CTYRAG 3 cut(s) 115, 692, 963
Sse9I AATT 6 cut(s) 121, 227, 317, 342, 405, 1158
SsiI CCGC 1 cut(s) 529
SspI AATATT 1 cut(s) 1103
StyD4I CCNGG 3 cut(s) 221, 745, 930
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 178
TasI AATT 6 cut(s) 121, 227, 317, 342, 405, 1158
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 5 cut(s) 367, 469, 705, 814, 911
Tru1I TTAA 2 cut(s) 684, 998
Tru9I TTAA 2 cut(s) 684, 998
TscAI CASTG 3 cut(s) 285, 337, 1174
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 3 cut(s) 462, 612, 1166
TspGWI ACGGA 2 cut(s) 155, 1025
TspRI CASTG 3 cut(s) 285, 337, 1174
VpaK11BI GGWCC 2 cut(s) 101, 853
XapI RAATTY 2 cut(s) 227, 317
XceI RCATGY 1 cut(s) 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 818
XmnI GAANNNNTTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.