histone-lysine N-methyltransferase, H3 lysine-9 specific
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 318 - 466 | 3.8e-53 | SAD/SRA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 835 |
| AccIII | TCCGGA | 1 cut(s) | 1171 |
| AclWI | GGATC | 1 cut(s) | 1252 |
| AcsI | RAATTY | 2 cut(s) | 986, 1129 |
| AcuI | CTGAAG | 3 cut(s) | 144, 617, 1206 |
| AfaI | GTAC | 1 cut(s) | 169 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 143, 260, 590, 796 |
| AflIII | ACRYGT | 1 cut(s) | 958 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 110, 813 |
| AhlI | ACTAGT | 1 cut(s) | 1082 |
| AjnI | CCWGG | 3 cut(s) | 136, 548, 583 |
| AleI | CACNNNNGTG | 1 cut(s) | 345 |
| AluBI | AGCT | 8 cut(s) | 337, 631, 637, 899, 1040, 1198, 1360, 1401 |
| AluI | AGCT | 8 cut(s) | 337, 631, 637, 899, 1040, 1198, 1360, 1401 |
| Alw26I | GTCTC | 3 cut(s) | 97, 118, 800 |
| AlwI | GGATC | 1 cut(s) | 1252 |
| Ama87I | CYCGRG | 1 cut(s) | 92 |
| Aor13HI | TCCGGA | 1 cut(s) | 1171 |
| AoxI | GGCC | 5 cut(s) | 89, 282, 567, 1147, 1346 |
| ApaI | GGGCCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 4 cut(s) | 22, 756, 759, 899 |
| ApoI | RAATTY | 2 cut(s) | 986, 1129 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 237, 336 |
| AspS9I | GGNCC | 5 cut(s) | 89, 90, 568, 1147, 1346 |
| AsuC2I | CCSGG | 1 cut(s) | 966 |
| AsuHPI | GGTGA | 2 cut(s) | 811, 1019 |
| AvaI | CYCGRG | 1 cut(s) | 92 |
| BaeGI | GKGCMC | 1 cut(s) | 93 |
| BanII | GRGCYC | 1 cut(s) | 93 |
| BbsI | GAAGAC | 1 cut(s) | 731 |
| BbvI | GCAGC | 4 cut(s) | 34, 768, 771, 886 |
| BccI | CCATC | 6 cut(s) | 400, 412, 474, 794, 1274, 1301 |
| BceAI | ACGGC | 1 cut(s) | 193 |
| BciT130I | CCWGG | 3 cut(s) | 138, 550, 585 |
| BcnI | CCSGG | 1 cut(s) | 966 |
| BcoDI | GTCTC | 3 cut(s) | 97, 118, 800 |
| BcuI | ACTAGT | 1 cut(s) | 1082 |
| BfaI | CTAG | 5 cut(s) | 396, 638, 747, 1083, 1379 |
| BglII | AGATCT | 1 cut(s) | 644 |
| BisI | GCNGC | 4 cut(s) | 23, 757, 760, 900 |
| BlsI | GCNGC | 4 cut(s) | 24, 758, 761, 901 |
| Bme1390I | CCNGG | 4 cut(s) | 138, 550, 585, 966 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 110, 813 |
| BmeT110I | CYCGRG | 1 cut(s) | 92 |
| BmgT120I | GGNCC | 5 cut(s) | 89, 90, 568, 1147, 1346 |
| BmiI | GGNNCC | 3 cut(s) | 91, 1182, 1347 |
| BmrFI | CCNGG | 4 cut(s) | 138, 550, 585, 966 |
| BmsI | GCATC | 7 cut(s) | 545, 643, 772, 1062, 1103, 1155, 1177 |
| BpiI | GAAGAC | 1 cut(s) | 731 |
| BpuEI | CTTGAG | 3 cut(s) | 354, 896, 1020 |
| BpuMI | CCSGG | 1 cut(s) | 966 |
| BsaI | GGTCTC | 1 cut(s) | 97 |
| BsaJI | CCNNGG | 7 cut(s) | 78, 137, 285, 428, 964, 1150, 1261 |
| BsaWI | WCCGGW | 1 cut(s) | 1171 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1146, 1176 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 143, 260, 590, 796 |
| Bse1I | ACTGG | 3 cut(s) | 736, 846, 943 |
| BseAI | TCCGGA | 1 cut(s) | 1171 |
| BseBI | CCWGG | 3 cut(s) | 138, 550, 585 |
| BseDI | CCNNGG | 7 cut(s) | 78, 137, 285, 428, 964, 1150, 1261 |
| BseGI | GGATG | 6 cut(s) | 325, 423, 541, 786, 787, 1168 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 143, 260, 590, 796 |
| BseMII | CTCAG | 3 cut(s) | 45, 690, 892 |
| BseNI | ACTGG | 3 cut(s) | 736, 846, 943 |
| BseRI | GAGGAG | 2 cut(s) | 207, 603 |
| BseSI | GKGCMC | 1 cut(s) | 93 |
| BseXI | GCAGC | 4 cut(s) | 34, 768, 771, 886 |
| BshFI | GGCC | 5 cut(s) | 91, 284, 569, 1149, 1348 |
| BsiHKCI | CYCGRG | 1 cut(s) | 92 |
| BsiSI | CCGG | 2 cut(s) | 966, 1172 |
| BslFI | GGGAC | 2 cut(s) | 947, 969 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 143, 260, 590, 796 |
| BsmAI | GTCTC | 3 cut(s) | 97, 118, 800 |
| BsmBI | CGTCTC | 1 cut(s) | 800 |
| BsmFI | GGGAC | 2 cut(s) | 947, 969 |
| BsnI | GGCC | 5 cut(s) | 91, 284, 569, 1149, 1348 |
| Bso31I | GGTCTC | 1 cut(s) | 97 |
| BsoBI | CYCGRG | 1 cut(s) | 92 |
| Bsp120I | GGGCCC | 1 cut(s) | 89 |
| Bsp1286I | GDGCHC | 1 cut(s) | 93 |
| Bsp13I | TCCGGA | 1 cut(s) | 1171 |
| Bsp143I | GATC | 3 cut(s) | 644, 1189, 1257 |
| BspANI | GGCC | 5 cut(s) | 91, 284, 569, 1149, 1348 |
| BspCNI | CTCAG | 3 cut(s) | 46, 689, 891 |
| BspEI | TCCGGA | 1 cut(s) | 1171 |
| BspHI | TCATGA | 1 cut(s) | 766 |
| BspLI | GGNNCC | 3 cut(s) | 91, 1182, 1347 |
| BspPI | GGATC | 1 cut(s) | 1252 |
| BspQI | GCTCTTC | 1 cut(s) | 327 |
| BspTNI | GGTCTC | 1 cut(s) | 97 |
| BsrI | ACTGG | 3 cut(s) | 736, 846, 943 |
| BssECI | CCNNGG | 7 cut(s) | 78, 137, 285, 428, 964, 1150, 1261 |
| BssMI | GATC | 3 cut(s) | 644, 1189, 1257 |
| BssT1I | CCWWGG | 4 cut(s) | 78, 285, 428, 1150 |
| Bst2UI | CCWGG | 3 cut(s) | 138, 550, 585 |
| Bst4CI | ACNGT | 3 cut(s) | 150, 199, 347 |
| Bst6I | CTCTTC | 1 cut(s) | 327 |
| BstC8I | GCNNGC | 5 cut(s) | 534, 1077, 1232, 1236, 1403 |
| BstDEI | CTNAG | 3 cut(s) | 54, 676, 878 |
| BstDSI | CCRYGG | 1 cut(s) | 1261 |
| BstF5I | GGATG | 6 cut(s) | 325, 423, 541, 786, 787, 1168 |
| BstKTI | GATC | 3 cut(s) | 647, 1192, 1260 |
| BstMAI | GTCTC | 3 cut(s) | 97, 118, 800 |
| BstMBI | GATC | 3 cut(s) | 644, 1189, 1257 |
| BstNI | CCWGG | 3 cut(s) | 138, 550, 585 |
| BstNSI | RCATGY | 3 cut(s) | 962, 1234, 1238 |
| BstSCI | CCNGG | 4 cut(s) | 136, 548, 583, 964 |
| BstSLI | GKGCMC | 1 cut(s) | 93 |
| BstV1I | GCAGC | 4 cut(s) | 34, 768, 771, 886 |
| BstV2I | GAAGAC | 1 cut(s) | 731 |
| BstX2I | RGATCY | 1 cut(s) | 644 |
| BstYI | RGATCY | 1 cut(s) | 644 |
| BsuRI | GGCC | 5 cut(s) | 91, 284, 569, 1149, 1348 |
| BtgI | CCRYGG | 1 cut(s) | 1261 |
| BtgZI | GCGATG | 1 cut(s) | 996 |
| BtsCI | GGATG | 6 cut(s) | 325, 423, 541, 786, 787, 1168 |
| BtsIMutI | CAGTG | 1 cut(s) | 352 |
| Cac8I | GCNNGC | 5 cut(s) | 534, 1077, 1232, 1236, 1403 |
| CciI | TCATGA | 1 cut(s) | 766 |
| Cfr13I | GGNCC | 5 cut(s) | 89, 90, 568, 1147, 1346 |
| Csp6I | GTAC | 1 cut(s) | 168 |
| CviAII | CATG | 6 cut(s) | 193, 767, 959, 1231, 1235, 1352 |
| CviQI | GTAC | 1 cut(s) | 168 |
| DdeI | CTNAG | 3 cut(s) | 54, 676, 878 |
| DpnI | GATC | 3 cut(s) | 646, 1191, 1259 |
| DpnII | GATC | 3 cut(s) | 644, 1189, 1257 |
| DraI | TTTAAA | 1 cut(s) | 895 |
| DriI | GACNNNNNGTC | 2 cut(s) | 110, 813 |
| Eam1104I | CTCTTC | 1 cut(s) | 327 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 110, 813 |
| EarI | CTCTTC | 1 cut(s) | 327 |
| Eco130I | CCWWGG | 4 cut(s) | 78, 285, 428, 1150 |
| Eco24I | GRGCYC | 1 cut(s) | 93 |
| Eco31I | GGTCTC | 1 cut(s) | 97 |
| Eco57I | CTGAAG | 3 cut(s) | 144, 617, 1206 |
| Eco88I | CYCGRG | 1 cut(s) | 92 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1346 |
| EcoRI | GAATTC | 1 cut(s) | 1129 |
| EcoRII | CCWGG | 3 cut(s) | 136, 548, 583 |
| EcoT14I | CCWWGG | 4 cut(s) | 78, 285, 428, 1150 |
| EcoT22I | ATGCAT | 2 cut(s) | 1170, 1236 |
| EcoT38I | GRGCYC | 1 cut(s) | 93 |
| ErhI | CCWWGG | 4 cut(s) | 78, 285, 428, 1150 |
| Esp3I | CGTCTC | 1 cut(s) | 800 |
| FaeI | CATG | 6 cut(s) | 196, 770, 962, 1234, 1238, 1355 |
| FaqI | GGGAC | 2 cut(s) | 947, 969 |
| FatI | CATG | 6 cut(s) | 192, 766, 958, 1230, 1234, 1351 |
| FblI | GTMKAC | 1 cut(s) | 835 |
| Fnu4HI | GCNGC | 4 cut(s) | 23, 757, 760, 900 |
| FokI | GGATG | 6 cut(s) | 332, 430, 528, 773, 794, 1155 |
| FriOI | GRGCYC | 1 cut(s) | 93 |
| Fsp4HI | GCNGC | 4 cut(s) | 23, 757, 760, 900 |
| FspBI | CTAG | 5 cut(s) | 396, 638, 747, 1083, 1379 |
| GluI | GCNGC | 4 cut(s) | 23, 757, 760, 900 |
| HaeIII | GGCC | 5 cut(s) | 91, 284, 569, 1149, 1348 |
| HapII | CCGG | 2 cut(s) | 966, 1172 |
| Hin1II | CATG | 6 cut(s) | 196, 770, 962, 1234, 1238, 1355 |
| HindIII | AAGCTT | 3 cut(s) | 629, 1196, 1358 |
| HinfI | GANTC | 6 cut(s) | 32, 50, 111, 623, 907, 1243 |
| HpaII | CCGG | 2 cut(s) | 966, 1172 |
| HphI | GGTGA | 2 cut(s) | 811, 1019 |
| Hpy166II | GTNNAC | 2 cut(s) | 146, 836 |
| Hpy188I | TCNGA | 9 cut(s) | 55, 313, 496, 522, 679, 791, 881, 1279, 1398 |
| Hpy188III | TCNNGA | 7 cut(s) | 39, 125, 242, 326, 767, 913, 1172 |
| Hpy8I | GTNNAC | 2 cut(s) | 146, 836 |
| HpyAV | CCTTC | 8 cut(s) | 550, 555, 773, 857, 876, 910, 914, 1330 |
| HpyCH4III | ACNGT | 3 cut(s) | 150, 199, 347 |
| HpyCH4IV | ACGT | 2 cut(s) | 424, 809 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 676, 878 |
| HpySE526I | ACGT | 2 cut(s) | 424, 809 |
| Hsp92II | CATG | 6 cut(s) | 196, 770, 962, 1234, 1238, 1355 |
| Kpn2I | TCCGGA | 1 cut(s) | 1171 |
| Kzo9I | GATC | 3 cut(s) | 644, 1189, 1257 |
| LguI | GCTCTTC | 1 cut(s) | 327 |
| Lsp1109I | GCAGC | 4 cut(s) | 34, 768, 771, 886 |
| LweI | GCATC | 7 cut(s) | 545, 643, 772, 1062, 1103, 1155, 1177 |
| MaeI | CTAG | 5 cut(s) | 396, 638, 747, 1083, 1379 |
| MaeII | ACGT | 2 cut(s) | 424, 809 |
| MaeIII | GTNAC | 2 cut(s) | 125, 799 |
| MalI | GATC | 3 cut(s) | 646, 1191, 1259 |
| MboI | GATC | 3 cut(s) | 644, 1189, 1257 |
| MboII | GAAGA | 9 cut(s) | 81, 344, 488, 491, 736, 1081, 1199, 1234, 1296 |
| MfeI | CAATTG | 1 cut(s) | 45 |
| MflI | RGATCY | 1 cut(s) | 644 |
| MhlI | GDGCHC | 1 cut(s) | 93 |
| MlyI | GAGTC | 2 cut(s) | 120, 1237 |
| MmeI | TCCRAC | 2 cut(s) | 9, 1313 |
| Mph1103I | ATGCAT | 2 cut(s) | 1170, 1236 |
| MroI | TCCGGA | 1 cut(s) | 1171 |
| MroXI | GAANNNNTTC | 2 cut(s) | 237, 336 |
| MseI | TTAA | 2 cut(s) | 894, 1008 |
| MslI | CAYNNNNRTG | 4 cut(s) | 185, 197, 256, 345 |
| MspI | CCGG | 2 cut(s) | 966, 1172 |
| MspR9I | CCNGG | 4 cut(s) | 138, 550, 585, 966 |
| MunI | CAATTG | 1 cut(s) | 45 |
| MvaI | CCWGG | 3 cut(s) | 138, 550, 585 |
| NciI | CCSGG | 1 cut(s) | 966 |
| NdeII | GATC | 3 cut(s) | 644, 1189, 1257 |
| NlaIII | CATG | 6 cut(s) | 196, 770, 962, 1234, 1238, 1355 |
| NlaIV | GGNNCC | 3 cut(s) | 91, 1182, 1347 |
| NmuCI | GTSAC | 2 cut(s) | 125, 799 |
| NsiI | ATGCAT | 2 cut(s) | 1170, 1236 |
| NspI | RCATGY | 3 cut(s) | 962, 1234, 1238 |
| OliI | CACNNNNGTG | 1 cut(s) | 345 |
| PaeI | GCATGC | 2 cut(s) | 1234, 1238 |
| PagI | TCATGA | 1 cut(s) | 766 |
| PciI | ACATGT | 1 cut(s) | 958 |
| PciSI | GCTCTTC | 1 cut(s) | 327 |
| PdmI | GAANNNNTTC | 2 cut(s) | 237, 336 |
| PfeI | GAWTC | 4 cut(s) | 32, 50, 623, 907 |
| PkrI | GCNGC | 4 cut(s) | 24, 758, 761, 901 |
| PleI | GAGTC | 2 cut(s) | 119, 1237 |
| PpsI | GAGTC | 2 cut(s) | 119, 1237 |
| PscI | ACATGT | 1 cut(s) | 958 |
| Psp6I | CCWGG | 3 cut(s) | 136, 548, 583 |
| PspGI | CCWGG | 3 cut(s) | 136, 548, 583 |
| PspN4I | GGNNCC | 3 cut(s) | 91, 1182, 1347 |
| PspOMI | GGGCCC | 1 cut(s) | 89 |
| PspPI | GGNCC | 5 cut(s) | 89, 90, 568, 1147, 1346 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 222, 254 |
| PsuI | RGATCY | 1 cut(s) | 644 |
| RsaI | GTAC | 1 cut(s) | 169 |
| RsaNI | GTAC | 1 cut(s) | 168 |
| RseI | CAYNNNNRTG | 4 cut(s) | 185, 197, 256, 345 |
| SapI | GCTCTTC | 1 cut(s) | 327 |
| SaqAI | TTAA | 2 cut(s) | 894, 1008 |
| SatI | GCNGC | 4 cut(s) | 23, 757, 760, 900 |
| Sau3AI | GATC | 3 cut(s) | 644, 1189, 1257 |
| Sau96I | GGNCC | 5 cut(s) | 89, 90, 568, 1147, 1346 |
| SchI | GAGTC | 2 cut(s) | 120, 1237 |
| ScrFI | CCNGG | 4 cut(s) | 138, 550, 585, 966 |
| SduI | GDGCHC | 1 cut(s) | 93 |
| SfaNI | GCATC | 7 cut(s) | 545, 643, 772, 1062, 1103, 1155, 1177 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 185, 197, 256, 345 |
| SmlI | CTYRAG | 3 cut(s) | 369, 911, 1035 |
| SmoI | CTYRAG | 3 cut(s) | 369, 911, 1035 |
| SpeI | ACTAGT | 1 cut(s) | 1082 |
| SphI | GCATGC | 2 cut(s) | 1234, 1238 |
| SspI | AATATT | 3 cut(s) | 706, 1012, 1295 |
| SspMI | CTAG | 5 cut(s) | 396, 638, 747, 1083, 1379 |
| StyD4I | CCNGG | 4 cut(s) | 136, 548, 583, 964 |
| StyI | CCWWGG | 4 cut(s) | 78, 285, 428, 1150 |
| TaaI | ACNGT | 3 cut(s) | 150, 199, 347 |
| TaiI | ACGT | 2 cut(s) | 427, 812 |
| TaqI | TCGA | 3 cut(s) | 38, 279, 752 |
| TfiI | GAWTC | 4 cut(s) | 32, 50, 623, 907 |
| Tru1I | TTAA | 2 cut(s) | 894, 1008 |
| Tru9I | TTAA | 2 cut(s) | 894, 1008 |
| TscAI | CASTG | 1 cut(s) | 352 |
| TseFI | GTSAC | 2 cut(s) | 125, 799 |
| TseI | GCWGC | 4 cut(s) | 22, 756, 759, 899 |
| Tsp45I | GTSAC | 2 cut(s) | 125, 799 |
| TspDTI | ATGAA | 6 cut(s) | 312, 345, 698, 755, 980, 999 |
| TspGWI | ACGGA | 2 cut(s) | 794, 1250 |
| TspRI | CASTG | 1 cut(s) | 352 |
| XapI | RAATTY | 2 cut(s) | 986, 1129 |
| XceI | RCATGY | 3 cut(s) | 962, 1234, 1238 |
| XmiI | GTMKAC | 1 cut(s) | 835 |
| XmnI | GAANNNNTTC | 2 cut(s) | 237, 336 |
| XspI | CTAG | 5 cut(s) | 396, 638, 747, 1083, 1379 |
| Zsp2I | ATGCAT | 2 cut(s) | 1170, 1236 |