Rh7BG215000

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000355
Physical Location & Seq
Reverse (-)
18342550 .. 18345428
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG215000.1

Sequence Viewer

Length: 1221 bp
ATGTTGCTCATGGAAGATAGTGAGTGTTTTTCCCATACCAAGTTGCCAGAGTATAAGAGGTGTAGAGTCTCTGCTGTTCGTGATTATCCTTTAGGGTGTGGACCATTTGCTCACTTGAGTAATTTAAATGCCAATGCTACAGAGAGAATTTCAGATAAGAAATATCTTCCTCAATCAGTAGAAGCTGTTCGGGATTTTCCTCCTTTCTGTGGGATAAATGCTTCTCCTGAGGCCAGGAAATTCGGCCAAGAGAAGTCAGTTAGGGATTACAAGTCATCATCATCAAAGACAGTGAAGACTAATGTGAAACAAACAGGACTTGGGAACAAATTTCAACCTAACACTGAGAAGAAAATTGGAGGAAAGTCTCTAAAGAAGAATCATCATGTACCAGTAAAGGCTGCTTGTCAAGGTACAATTCAACTTGATATAAGGAAGAAGGAGTATTATCAGCATGATGAAAAAGAACACAATCATGTGATTCCAAAATCATGGAGTACAGATGGGTGCCCTCCTCCTTTTGGTTGTAGTAGTTCAAGCCGCAGAAGTCATGATAATGACACAACTGAGAGAAACAAGGTAAAGGAGATATTGCATATGTTCCAAGATGAATGTGAAAAGCTCTTGCTGGAGGAAGAACATAAAAGATCAAAGGGAGGAGGAACTTCTTTCCGAAGGGTTGATTTGGAAGCCTTTAAGATCCTCAAGGATAGAGGAATCTTTGTAAAATCAGGCAAACATGTCATAGGAGATATCCCAGGAGTTGAAGTTGGTGATAAGTTTCAATACCGAGTGGAACTTATCCTTATTGGCCTACATCACCAGATTCAAGGTGGTATAGCTTATGGGAACTTTGGTGGTAAGGTCCTTGCAACCAGTATCGTTGCATCTGGTGGCTATGCAGATGATTTGCATAGTAAGGATTCGTTGATCTATACTGGCCAGGGAGGAAATGCAAAGAATACAAAGGGCCAGGGAGGAAATGCAAAGAATACAAAGGGCCCTCAAGATCAGAAGCTTGAACGGGGAAATCTTGCTTTAAAGAATAGTGTGCAAAAGAACCCTGTCAGAGTGATCCGTGGCTCCGAACTATTGGATGGAAGTAGGACATATGTCTATGATGAACTATATTTGGTAGAGAAATATTGGCAGGAAAGGGGGCCTCTTGGTAAGCTTGTTTTCAAGTTTCAGATGAACAGAATTGGAGGCACTGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

406

Amino Acids

45.31

Weight (kDa)

9.42

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 249 - 403 5.2e-47 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 507
AciI CCGC 1 cut(s) 541
AclWI GGATC 2 cut(s) 694, 1069
AcoI YGGCCR 2 cut(s) 244, 940
AcsI RAATTY 3 cut(s) 147, 239, 329
AfaI GTAC 3 cut(s) 390, 415, 499
AfiI CCNNNNNNNGG 2 cut(s) 209, 521
AflIII ACRYGT 1 cut(s) 739
AgsI TTSAA 8 cut(s) 335, 422, 537, 767, 785, 830, 1022, 1183
AjnI CCWGG 4 cut(s) 233, 757, 942, 972
AluBI AGCT 5 cut(s) 185, 622, 842, 1018, 1174
AluI AGCT 5 cut(s) 185, 622, 842, 1018, 1174
Alw26I GTCTC 2 cut(s) 73, 372
AlwI GGATC 2 cut(s) 694, 1069
AoxI GGCC 7 cut(s) 231, 244, 811, 940, 970, 1000, 1160
ApaI GGGCCC 1 cut(s) 1004
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 3 cut(s) 147, 239, 329
Asp700I GAANNNNTTC 1 cut(s) 186
AspS9I GGNCC 6 cut(s) 101, 865, 970, 1000, 1001, 1160
AsuHPI GGTGA 2 cut(s) 785, 812
AvaII GGWCC 2 cut(s) 101, 865
AxyI CCTNAGG 1 cut(s) 228
BaeGI GKGCMC 2 cut(s) 512, 1004
BalI TGGCCA 1 cut(s) 942
BanI GGYRCC 1 cut(s) 507
BanII GRGCYC 1 cut(s) 1004
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 388
BccI CCATC 2 cut(s) 497, 1091
BciT130I CCWGG 4 cut(s) 235, 759, 944, 974
BcoDI GTCTC 2 cut(s) 73, 372
BfmI CTRYAG 1 cut(s) 138
BisI GCNGC 2 cut(s) 402, 541
BlsI GCNGC 2 cut(s) 403, 542
Bme1390I CCNGG 4 cut(s) 235, 759, 944, 974
Bme18I GGWCC 2 cut(s) 101, 865
BmgT120I GGNCC 6 cut(s) 101, 865, 970, 1000, 1001, 1160
BmiI GGNNCC 4 cut(s) 509, 1002, 1084, 1161
BmrFI CCNGG 4 cut(s) 235, 759, 944, 974
BmsI GCATC 1 cut(s) 896
BoxI GACNNNNGTC 1 cut(s) 1112
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 1 cut(s) 650
BpuEI CTTGAG 3 cut(s) 136, 689, 990
BsaJI CCNNGG 4 cut(s) 757, 943, 973, 1078
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 521
Bse1I ACTGG 4 cut(s) 392, 876, 943, 1216
Bse21I CCTNAGG 1 cut(s) 228
BseBI CCWGG 4 cut(s) 235, 759, 944, 974
BseDI CCNNGG 4 cut(s) 757, 943, 973, 1078
BseGI GGATG 1 cut(s) 1102
BseLI CCNNNNNNNGG 2 cut(s) 209, 521
BseMII CTCAG 3 cut(s) 219, 336, 558
BseNI ACTGG 4 cut(s) 392, 876, 943, 1216
BseRI GAGGAG 2 cut(s) 504, 672
BseSI GKGCMC 2 cut(s) 512, 1004
BseXI GCAGC 1 cut(s) 388
BshFI GGCC 7 cut(s) 233, 246, 813, 942, 972, 1002, 1162
BshNI GGYRCC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 209, 521
BsmAI GTCTC 2 cut(s) 73, 372
BsnI GGCC 7 cut(s) 233, 246, 813, 942, 972, 1002, 1162
Bsp120I GGGCCC 1 cut(s) 1000
Bsp1286I GDGCHC 2 cut(s) 512, 1004
Bsp143I GATC 5 cut(s) 647, 699, 930, 1009, 1074
BspACI CCGC 1 cut(s) 541
BspANI GGCC 7 cut(s) 233, 246, 813, 942, 972, 1002, 1162
BspCNI CTCAG 3 cut(s) 220, 337, 559
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 4 cut(s) 509, 1002, 1084, 1161
BspPI GGATC 2 cut(s) 694, 1069
BspT107I GGYRCC 1 cut(s) 507
BsrI ACTGG 4 cut(s) 392, 876, 943, 1216
BssECI CCNNGG 4 cut(s) 757, 943, 973, 1078
BssMI GATC 5 cut(s) 647, 699, 930, 1009, 1074
Bst2UI CCWGG 4 cut(s) 235, 759, 944, 974
Bst4CI ACNGT 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 228, 345, 567
BstDSI CCRYGG 1 cut(s) 1078
BstF5I GGATG 1 cut(s) 1102
BstKTI GATC 5 cut(s) 650, 702, 933, 1012, 1077
BstMAI GTCTC 2 cut(s) 73, 372
BstMBI GATC 5 cut(s) 647, 699, 930, 1009, 1074
BstNI CCWGG 4 cut(s) 235, 759, 944, 974
BstNSI RCATGY 1 cut(s) 743
BstPAI GACNNNNGTC 1 cut(s) 1112
BstSCI CCNGG 4 cut(s) 233, 757, 942, 972
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 2 cut(s) 512, 1004
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 699
BstXI CCANNNNNNTGG 1 cut(s) 492
BstYI RGATCY 1 cut(s) 699
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 7 cut(s) 233, 246, 813, 942, 972, 1002, 1162
BtgI CCRYGG 1 cut(s) 1078
BtsCI GGATG 1 cut(s) 1102
BtsIMutI CAGTG 3 cut(s) 297, 342, 1209
CciI TCATGA 1 cut(s) 550
Cfr13I GGNCC 6 cut(s) 101, 865, 970, 1000, 1001, 1160
Csp6I GTAC 3 cut(s) 389, 414, 498
CviAII CATG 7 cut(s) 10, 386, 455, 476, 492, 551, 740
CviQI GTAC 3 cut(s) 389, 414, 498
DdeI CTNAG 3 cut(s) 228, 345, 567
DpnI GATC 5 cut(s) 649, 701, 932, 1011, 1076
DpnII GATC 5 cut(s) 647, 699, 930, 1009, 1074
DraI TTTAAA 2 cut(s) 126, 1041
EaeI YGGCCR 2 cut(s) 244, 940
Eco24I GRGCYC 1 cut(s) 1004
Eco32I GATATC 1 cut(s) 754
Eco47I GGWCC 2 cut(s) 101, 865
Eco81I CCTNAGG 1 cut(s) 228
EcoO109I RGGNCCY 4 cut(s) 865, 1000, 1001, 1160
EcoRII CCWGG 4 cut(s) 233, 757, 942, 972
EcoRV GATATC 1 cut(s) 754
EcoT38I GRGCYC 1 cut(s) 1004
FaeI CATG 7 cut(s) 13, 389, 458, 479, 495, 554, 743
FatI CATG 7 cut(s) 9, 385, 454, 475, 491, 550, 739
FauNDI CATATG 2 cut(s) 597, 1111
Fnu4HI GCNGC 2 cut(s) 402, 541
FokI GGATG 1 cut(s) 1109
FriOI GRGCYC 1 cut(s) 1004
Fsp4HI GCNGC 2 cut(s) 402, 541
GluI GCNGC 2 cut(s) 402, 541
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 7 cut(s) 233, 246, 813, 942, 972, 1002, 1162
Hin1II CATG 7 cut(s) 13, 389, 458, 479, 495, 554, 743
HindIII AAGCTT 2 cut(s) 1016, 1172
HinfI GANTC 6 cut(s) 66, 379, 481, 717, 826, 923
HphI GGTGA 2 cut(s) 785, 812
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 6 cut(s) 154, 674, 1014, 1070, 1087, 1191
Hpy188III TCNNGA 5 cut(s) 80, 191, 227, 551, 1007
Hpy8I GTNNAC 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 433, 669
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 8 cut(s) 595, 872, 887, 902, 913, 956, 986, 1054
HpyF3I CTNAG 3 cut(s) 228, 345, 567
Hsp92II CATG 7 cut(s) 13, 389, 458, 479, 495, 554, 743
Kzo9I GATC 5 cut(s) 647, 699, 930, 1009, 1074
LmnI GCTCC 1 cut(s) 1088
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 896
MalI GATC 5 cut(s) 649, 701, 932, 1011, 1076
MboI GATC 5 cut(s) 647, 699, 930, 1009, 1074
MboII GAAGA 7 cut(s) 26, 158, 307, 361, 388, 448, 647
MflI RGATCY 1 cut(s) 699
MhlI GDGCHC 2 cut(s) 512, 1004
MlsI TGGCCA 1 cut(s) 942
MluCI AATT 7 cut(s) 121, 147, 239, 329, 354, 417, 1200
MluNI TGGCCA 1 cut(s) 942
MlyI GAGTC 1 cut(s) 75
Mox20I TGGCCA 1 cut(s) 942
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 1 cut(s) 942
MseI TTAA 3 cut(s) 125, 696, 1040
MslI CAYNNNNRTG 2 cut(s) 474, 555
Msp20I TGGCCA 1 cut(s) 942
MspR9I CCNGG 4 cut(s) 235, 759, 944, 974
MvaI CCWGG 4 cut(s) 235, 759, 944, 974
NdeI CATATG 2 cut(s) 597, 1111
NdeII GATC 5 cut(s) 647, 699, 930, 1009, 1074
NlaIII CATG 7 cut(s) 13, 389, 458, 479, 495, 554, 743
NlaIV GGNNCC 4 cut(s) 509, 1002, 1084, 1161
NspI RCATGY 1 cut(s) 743
PagI TCATGA 1 cut(s) 550
PciI ACATGT 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 5 cut(s) 379, 481, 717, 826, 923
PkrI GCNGC 2 cut(s) 403, 542
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 865
PscI ACATGT 1 cut(s) 739
PshAI GACNNNNGTC 1 cut(s) 1112
Psp5II RGGWCCY 1 cut(s) 865
Psp6I CCWGG 4 cut(s) 233, 757, 942, 972
PspGI CCWGG 4 cut(s) 233, 757, 942, 972
PspN4I GGNNCC 4 cut(s) 509, 1002, 1084, 1161
PspOMI GGGCCC 1 cut(s) 1000
PspPI GGNCC 6 cut(s) 101, 865, 970, 1000, 1001, 1160
PspPPI RGGWCCY 1 cut(s) 865
PsrI GAACNNNNNNTAC 2 cut(s) 171, 203
PsuI RGATCY 1 cut(s) 699
RsaI GTAC 3 cut(s) 390, 415, 499
RsaNI GTAC 3 cut(s) 389, 414, 498
RseI CAYNNNNRTG 2 cut(s) 474, 555
SaqAI TTAA 3 cut(s) 125, 696, 1040
SatI GCNGC 2 cut(s) 402, 541
Sau3AI GATC 5 cut(s) 647, 699, 930, 1009, 1074
Sau96I GGNCC 6 cut(s) 101, 865, 970, 1000, 1001, 1160
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 4 cut(s) 235, 759, 944, 974
SduI GDGCHC 2 cut(s) 512, 1004
SfaNI GCATC 1 cut(s) 896
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 2 cut(s) 101, 865
SmiI ATTTAAAT 1 cut(s) 126
SmiMI CAYNNNNRTG 2 cut(s) 474, 555
SmlI CTYRAG 3 cut(s) 115, 704, 1005
SmoI CTYRAG 3 cut(s) 115, 704, 1005
Sse9I AATT 7 cut(s) 121, 147, 239, 329, 354, 417, 1200
SsiI CCGC 1 cut(s) 541
SspI AATATT 1 cut(s) 1145
StyD4I CCNGG 4 cut(s) 233, 757, 942, 972
SwaI ATTTAAAT 1 cut(s) 126
TaaI ACNGT 1 cut(s) 292
TasI AATT 7 cut(s) 121, 147, 239, 329, 354, 417, 1200
TatI WGTACW 1 cut(s) 497
TauI GCSGC 1 cut(s) 543
TfiI GAWTC 5 cut(s) 379, 481, 717, 826, 923
Tru1I TTAA 3 cut(s) 125, 696, 1040
Tru9I TTAA 3 cut(s) 125, 696, 1040
TscAI CASTG 3 cut(s) 297, 349, 1216
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 4 cut(s) 474, 624, 1137, 1208
TspGWI ACGGA 1 cut(s) 1067
TspRI CASTG 3 cut(s) 297, 349, 1216
VpaK11BI GGWCC 2 cut(s) 101, 865
XapI RAATTY 3 cut(s) 147, 239, 329
XceI RCATGY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.