histone-lysine N-methyltransferase, H3 lysine-9 specific
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Chromosome_seg | PF13889 | 668 - 749 | 3.7e-23 | Chromosome segregation during meiosis |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 139 |
| Acc36I | ACCTGC | 1 cut(s) | 139 |
| AccBSI | CCGCTC | 1 cut(s) | 2131 |
| AciI | CCGC | 4 cut(s) | 126, 466, 854, 2131 |
| AclWI | GGATC | 3 cut(s) | 936, 2078, 2225 |
| AcsI | RAATTY | 7 cut(s) | 361, 367, 673, 838, 890, 1082, 1312 |
| AcuI | CTGAAG | 3 cut(s) | 1176, 1659, 2211 |
| AfaI | GTAC | 5 cut(s) | 694, 1515, 1789, 1930, 2216 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 465, 485, 666, 1459, 1505, 2093 |
| AflIII | ACRYGT | 1 cut(s) | 2206 |
| AjnI | CCWGG | 4 cut(s) | 172, 458, 641, 1000 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 662, 694, 2096, 2128 |
| AluBI | AGCT | 6 cut(s) | 102, 605, 1172, 1592, 1738, 1975 |
| AluI | AGCT | 6 cut(s) | 102, 605, 1172, 1592, 1738, 1975 |
| Alw21I | GWGCWC | 1 cut(s) | 62 |
| Alw26I | GTCTC | 4 cut(s) | 480, 500, 1022, 1959 |
| Alw44I | GTGCAC | 1 cut(s) | 58 |
| AlwI | GGATC | 3 cut(s) | 936, 2078, 2225 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1679 |
| AoxI | GGCC | 4 cut(s) | 441, 883, 1432, 1507 |
| ApaLI | GTGCAC | 1 cut(s) | 58 |
| ApeKI | GCWGC | 2 cut(s) | 47, 99 |
| ApoI | RAATTY | 7 cut(s) | 361, 367, 673, 838, 890, 1082, 1312 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 208, 240 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2240 |
| AspLEI | GCGC | 2 cut(s) | 1614, 2136 |
| AspS9I | GGNCC | 5 cut(s) | 722, 884, 976, 1203, 1433 |
| AsuC2I | CCSGG | 1 cut(s) | 448 |
| AsuHPI | GGTGA | 7 cut(s) | 527, 545, 1311, 1694, 1867, 1883, 2012 |
| AsuII | TTCGAA | 1 cut(s) | 227 |
| AvaII | GGWCC | 3 cut(s) | 722, 976, 1203 |
| BaeGI | GKGCMC | 1 cut(s) | 62 |
| BanII | GRGCYC | 1 cut(s) | 1042 |
| BauI | CACGAG | 1 cut(s) | 1470 |
| BbsI | GAAGAC | 2 cut(s) | 12, 1672 |
| Bbv12I | GWGCWC | 1 cut(s) | 62 |
| BbvCI | CCTCAGC | 1 cut(s) | 36 |
| BbvI | GCAGC | 2 cut(s) | 59, 111 |
| BccI | CCATC | 6 cut(s) | 560, 713, 983, 1271, 1355, 1711 |
| BceAI | ACGGC | 1 cut(s) | 1494 |
| BciT130I | CCWGG | 4 cut(s) | 174, 460, 643, 1002 |
| BcnI | CCSGG | 1 cut(s) | 448 |
| BcoDI | GTCTC | 4 cut(s) | 480, 500, 1022, 1959 |
| BfaI | CTAG | 6 cut(s) | 24, 408, 1628, 1715, 1725, 2257 |
| BfoI | RGCGCY | 1 cut(s) | 2137 |
| BfuAI | ACCTGC | 1 cut(s) | 139 |
| BglII | AGATCT | 1 cut(s) | 1396 |
| BisI | GCNGC | 3 cut(s) | 48, 100, 2132 |
| BlsI | GCNGC | 3 cut(s) | 49, 101, 2133 |
| Bme1390I | CCNGG | 5 cut(s) | 174, 448, 460, 643, 1002 |
| Bme18I | GGWCC | 3 cut(s) | 722, 976, 1203 |
| BmgT120I | GGNCC | 5 cut(s) | 722, 884, 976, 1203, 1433 |
| BmiI | GGNNCC | 4 cut(s) | 744, 1041, 1435, 1484 |
| BmrFI | CCNGG | 5 cut(s) | 174, 448, 460, 643, 1002 |
| BmsI | GCATC | 5 cut(s) | 59, 548, 659, 868, 1804 |
| BpiI | GAAGAC | 2 cut(s) | 12, 1672 |
| BpmI | CTGGAG | 5 cut(s) | 195, 843, 933, 1150, 1326 |
| Bpu10I | CCTNAGC | 2 cut(s) | 36, 1454 |
| Bpu14I | TTCGAA | 1 cut(s) | 227 |
| BpuMI | CCSGG | 1 cut(s) | 448 |
| BsaAI | YACGTR | 1 cut(s) | 236 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1698 |
| BsaJI | CCNNGG | 6 cut(s) | 276, 738, 938, 1000, 1206, 1809 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 465, 485, 666, 1459, 1505, 2093 |
| Bse118I | RCCGGY | 1 cut(s) | 1742 |
| Bse1I | ACTGG | 7 cut(s) | 296, 1133, 1189, 1309, 1353, 1524, 1996 |
| Bse3DI | GCAATG | 1 cut(s) | 1753 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1698 |
| BseBI | CCWGG | 4 cut(s) | 174, 460, 643, 1002 |
| BseDI | CCNNGG | 6 cut(s) | 276, 738, 938, 1000, 1206, 1809 |
| BseGI | GGATG | 5 cut(s) | 563, 859, 1366, 1468, 1819 |
| BseJI | GATNNNNATC | 1 cut(s) | 1698 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 465, 485, 666, 1459, 1505, 2093 |
| BseMI | GCAATG | 1 cut(s) | 1753 |
| BseMII | CTCAG | 4 cut(s) | 27, 1092, 1540, 1670 |
| BseNI | ACTGG | 7 cut(s) | 296, 1133, 1189, 1309, 1353, 1524, 1996 |
| BseRI | GAGGAG | 4 cut(s) | 363, 694, 867, 1040 |
| BseSI | GKGCMC | 1 cut(s) | 62 |
| BseXI | GCAGC | 2 cut(s) | 59, 111 |
| BseYI | CCCAGC | 1 cut(s) | 1403 |
| BshFI | GGCC | 4 cut(s) | 443, 885, 1434, 1509 |
| BsiHKAI | GWGCWC | 1 cut(s) | 62 |
| BsiSI | CCGG | 2 cut(s) | 447, 1743 |
| BslFI | GGGAC | 1 cut(s) | 1092 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 465, 485, 666, 1459, 1505, 2093 |
| BsmAI | GTCTC | 4 cut(s) | 480, 500, 1022, 1959 |
| BsmBI | CGTCTC | 2 cut(s) | 480, 500 |
| BsmFI | GGGAC | 1 cut(s) | 1092 |
| BsmI | GAATGC | 4 cut(s) | 256, 495, 1122, 1853 |
| BsnI | GGCC | 4 cut(s) | 443, 885, 1434, 1509 |
| Bsp119I | TTCGAA | 1 cut(s) | 227 |
| Bsp1286I | GDGCHC | 2 cut(s) | 62, 1042 |
| Bsp1407I | TGTACA | 1 cut(s) | 1513 |
| Bsp143I | GATC | 8 cut(s) | 245, 267, 502, 928, 1396, 1620, 2083, 2230 |
| Bsp19I | CCATGG | 1 cut(s) | 276 |
| BspACI | CCGC | 4 cut(s) | 126, 466, 854, 2131 |
| BspANI | GGCC | 4 cut(s) | 443, 885, 1434, 1509 |
| BspCNI | CTCAG | 4 cut(s) | 28, 1093, 1539, 1669 |
| BspLI | GGNNCC | 4 cut(s) | 744, 1041, 1435, 1484 |
| BspMI | ACCTGC | 1 cut(s) | 139 |
| BspPI | GGATC | 3 cut(s) | 936, 2078, 2225 |
| BspQI | GCTCTTC | 2 cut(s) | 172, 2022 |
| BspT104I | TTCGAA | 1 cut(s) | 227 |
| BsrBI | CCGCTC | 1 cut(s) | 2131 |
| BsrDI | GCAATG | 1 cut(s) | 1753 |
| BsrFI | RCCGGY | 1 cut(s) | 1742 |
| BsrGI | TGTACA | 1 cut(s) | 1513 |
| BsrI | ACTGG | 7 cut(s) | 296, 1133, 1189, 1309, 1353, 1524, 1996 |
| BssAI | RCCGGY | 1 cut(s) | 1742 |
| BssECI | CCNNGG | 6 cut(s) | 276, 738, 938, 1000, 1206, 1809 |
| BssMI | GATC | 8 cut(s) | 245, 267, 502, 928, 1396, 1620, 2083, 2230 |
| BssSI | CACGAG | 1 cut(s) | 1470 |
| BssT1I | CCWWGG | 4 cut(s) | 276, 738, 1206, 1809 |
| Bst2BI | CACGAG | 1 cut(s) | 1470 |
| Bst2UI | CCWGG | 4 cut(s) | 174, 460, 643, 1002 |
| Bst4CI | ACNGT | 3 cut(s) | 956, 1487, 2111 |
| Bst6I | CTCTTC | 5 cut(s) | 172, 409, 1439, 1867, 2022 |
| BstAUI | TGTACA | 1 cut(s) | 1513 |
| BstBAI | YACGTR | 1 cut(s) | 236 |
| BstBI | TTCGAA | 1 cut(s) | 227 |
| BstC8I | GCNNGC | 3 cut(s) | 8, 91, 1590 |
| BstDEI | CTNAG | 8 cut(s) | 36, 1101, 1454, 1490, 1526, 1656, 1976, 2046 |
| BstDSI | CCRYGG | 1 cut(s) | 276 |
| BstEII | GGTNACC | 1 cut(s) | 1855 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1503 |
| BstF5I | GGATG | 5 cut(s) | 563, 859, 1366, 1468, 1819 |
| BstH2I | RGCGCY | 1 cut(s) | 2137 |
| BstHHI | GCGC | 2 cut(s) | 1614, 2136 |
| BstKTI | GATC | 8 cut(s) | 248, 270, 505, 931, 1399, 1623, 2086, 2233 |
| BstMAI | GTCTC | 4 cut(s) | 480, 500, 1022, 1959 |
| BstMBI | GATC | 8 cut(s) | 245, 267, 502, 928, 1396, 1620, 2083, 2230 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 99, 567 |
| BstNI | CCWGG | 4 cut(s) | 174, 460, 643, 1002 |
| BstNSI | RCATGY | 6 cut(s) | 148, 165, 256, 1588, 1935, 2210 |
| BstPI | GGTNACC | 1 cut(s) | 1855 |
| BstSCI | CCNGG | 5 cut(s) | 172, 446, 458, 641, 1000 |
| BstSLI | GKGCMC | 1 cut(s) | 62 |
| BstSNI | TACGTA | 1 cut(s) | 236 |
| BstV1I | GCAGC | 2 cut(s) | 59, 111 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 1672 |
| BstX2I | RGATCY | 3 cut(s) | 1396, 2083, 2230 |
| BstYI | RGATCY | 3 cut(s) | 1396, 2083, 2230 |
| BsuRI | GGCC | 4 cut(s) | 443, 885, 1434, 1509 |
| BtgI | CCRYGG | 1 cut(s) | 276 |
| BtsCI | GGATG | 5 cut(s) | 563, 859, 1366, 1468, 1819 |
| BtsI | GCAGTG | 1 cut(s) | 1719 |
| BtsIMutI | CAGTG | 5 cut(s) | 1126, 1360, 1719, 1775, 1948 |
| BveI | ACCTGC | 1 cut(s) | 139 |
| Cac8I | GCNNGC | 3 cut(s) | 8, 91, 1590 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1679 |
| CfoI | GCGC | 2 cut(s) | 1614, 2136 |
| Cfr10I | RCCGGY | 1 cut(s) | 1742 |
| Cfr13I | GGNCC | 5 cut(s) | 722, 884, 976, 1203, 1433 |
| CseI | GACGC | 1 cut(s) | 482 |
| CsiI | ACCWGGT | 1 cut(s) | 641 |
| Csp6I | GTAC | 5 cut(s) | 693, 1514, 1788, 1929, 2215 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 831, 866 |
| CviQI | GTAC | 5 cut(s) | 693, 1514, 1788, 1929, 2215 |
| DdeI | CTNAG | 8 cut(s) | 36, 1101, 1454, 1490, 1526, 1656, 1976, 2046 |
| DpnI | GATC | 8 cut(s) | 247, 269, 504, 930, 1398, 1622, 2085, 2232 |
| DpnII | GATC | 8 cut(s) | 245, 267, 502, 928, 1396, 1620, 2083, 2230 |
| DraI | TTTAAA | 1 cut(s) | 366 |
| Eam1104I | CTCTTC | 5 cut(s) | 172, 409, 1439, 1867, 2022 |
| EarI | CTCTTC | 5 cut(s) | 172, 409, 1439, 1867, 2022 |
| EciI | GGCGGA | 1 cut(s) | 141 |
| Eco105I | TACGTA | 1 cut(s) | 236 |
| Eco130I | CCWWGG | 4 cut(s) | 276, 738, 1206, 1809 |
| Eco24I | GRGCYC | 1 cut(s) | 1042 |
| Eco47I | GGWCC | 3 cut(s) | 722, 976, 1203 |
| Eco57I | CTGAAG | 3 cut(s) | 1176, 1659, 2211 |
| Eco91I | GGTNACC | 1 cut(s) | 1855 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1503 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1203, 1433 |
| EcoO65I | GGTNACC | 1 cut(s) | 1855 |
| EcoRI | GAATTC | 1 cut(s) | 673 |
| EcoRII | CCWGG | 4 cut(s) | 172, 458, 641, 1000 |
| EcoT14I | CCWWGG | 4 cut(s) | 276, 738, 1206, 1809 |
| EcoT22I | ATGCAT | 2 cut(s) | 258, 1853 |
| EcoT38I | GRGCYC | 1 cut(s) | 1042 |
| ErhI | CCWWGG | 4 cut(s) | 276, 738, 1206, 1809 |
| Esp3I | CGTCTC | 2 cut(s) | 480, 500 |
| FaqI | GGGAC | 1 cut(s) | 1092 |
| Fnu4HI | GCNGC | 3 cut(s) | 48, 100, 2132 |
| FokI | GGATG | 5 cut(s) | 570, 846, 1373, 1475, 1826 |
| FriOI | GRGCYC | 1 cut(s) | 1042 |
| Fsp4HI | GCNGC | 3 cut(s) | 48, 100, 2132 |
| FspBI | CTAG | 6 cut(s) | 24, 408, 1628, 1715, 1725, 2257 |
| GlaI | GCGC | 2 cut(s) | 1613, 2135 |
| GluI | GCNGC | 3 cut(s) | 48, 100, 2132 |
| GsaI | CCCAGC | 1 cut(s) | 1407 |
| GsuI | CTGGAG | 5 cut(s) | 195, 843, 933, 1150, 1326 |
| HaeII | RGCGCY | 1 cut(s) | 2137 |
| HaeIII | GGCC | 4 cut(s) | 443, 885, 1434, 1509 |
| HapII | CCGG | 2 cut(s) | 447, 1743 |
| HgaI | GACGC | 1 cut(s) | 482 |
| HhaI | GCGC | 2 cut(s) | 1614, 2136 |
| Hin6I | GCGC | 2 cut(s) | 1612, 2134 |
| HinP1I | GCGC | 2 cut(s) | 1612, 2134 |
| HindIII | AAGCTT | 1 cut(s) | 1973 |
| HinfI | GANTC | 9 cut(s) | 205, 1105, 1132, 1226, 1466, 1676, 1694, 1796, 2186 |
| HpaII | CCGG | 2 cut(s) | 447, 1743 |
| HphI | GGTGA | 7 cut(s) | 527, 545, 1311, 1694, 1867, 1883, 2012 |
| Hpy166II | GTNNAC | 3 cut(s) | 60, 693, 1514 |
| Hpy8I | GTNNAC | 3 cut(s) | 60, 693, 1514 |
| HpyAV | CCTTC | 9 cut(s) | 1151, 1194, 1404, 1645, 1903, 1977, 2033, 2117, 2235 |
| HpyCH4III | ACNGT | 3 cut(s) | 956, 1487, 2111 |
| HpyCH4IV | ACGT | 4 cut(s) | 62, 235, 2008, 2176 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 99, 567 |
| HpyF3I | CTNAG | 8 cut(s) | 36, 1101, 1454, 1490, 1526, 1656, 1976, 2046 |
| HpySE526I | ACGT | 4 cut(s) | 62, 235, 2008, 2176 |
| HspAI | GCGC | 2 cut(s) | 1612, 2134 |
| Kzo9I | GATC | 8 cut(s) | 245, 267, 502, 928, 1396, 1620, 2083, 2230 |
| LguI | GCTCTTC | 2 cut(s) | 172, 2022 |
| LmnI | GCTCC | 4 cut(s) | 742, 824, 1045, 2128 |
| Lsp1109I | GCAGC | 2 cut(s) | 59, 111 |
| LweI | GCATC | 5 cut(s) | 59, 548, 659, 868, 1804 |
| MabI | ACCWGGT | 1 cut(s) | 641 |
| MaeI | CTAG | 6 cut(s) | 24, 408, 1628, 1715, 1725, 2257 |
| MaeII | ACGT | 4 cut(s) | 62, 235, 2008, 2176 |
| MalI | GATC | 8 cut(s) | 247, 269, 504, 930, 1398, 1622, 2085, 2232 |
| MbiI | CCGCTC | 1 cut(s) | 2131 |
| MboI | GATC | 8 cut(s) | 245, 267, 502, 928, 1396, 1620, 2083, 2230 |
| MfeI | CAATTG | 1 cut(s) | 622 |
| MflI | RGATCY | 3 cut(s) | 1396, 2083, 2230 |
| MhlI | GDGCHC | 2 cut(s) | 62, 1042 |
| MlyI | GAGTC | 3 cut(s) | 1114, 1141, 1685 |
| MmeI | TCCRAC | 1 cut(s) | 101 |
| Mph1103I | ATGCAT | 2 cut(s) | 258, 1853 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2240 |
| MseI | TTAA | 9 cut(s) | 110, 296, 365, 387, 510, 525, 966, 1164, 1263 |
| MslI | CAYNNNNRTG | 5 cut(s) | 55, 65, 149, 1922, 1941 |
| MspA1I | CMGCKG | 2 cut(s) | 102, 1592 |
| MspI | CCGG | 2 cut(s) | 447, 1743 |
| MspR9I | CCNGG | 5 cut(s) | 174, 448, 460, 643, 1002 |
| MunI | CAATTG | 1 cut(s) | 622 |
| Mva1269I | GAATGC | 4 cut(s) | 256, 495, 1122, 1853 |
| MvaI | CCWGG | 4 cut(s) | 174, 460, 643, 1002 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 99, 567 |
| NciI | CCSGG | 1 cut(s) | 448 |
| NcoI | CCATGG | 1 cut(s) | 276 |
| NdeII | GATC | 8 cut(s) | 245, 267, 502, 928, 1396, 1620, 2083, 2230 |
| NlaIV | GGNNCC | 4 cut(s) | 744, 1041, 1435, 1484 |
| NmuCI | GTSAC | 6 cut(s) | 421, 813, 1348, 1580, 1855, 1871 |
| NsiI | ATGCAT | 2 cut(s) | 258, 1853 |
| NspI | RCATGY | 6 cut(s) | 148, 165, 256, 1588, 1935, 2210 |
| NspV | TTCGAA | 1 cut(s) | 227 |
| PaqCI | CACCTGC | 1 cut(s) | 139 |
| PciI | ACATGT | 1 cut(s) | 2206 |
| PciSI | GCTCTTC | 2 cut(s) | 172, 2022 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 59, 241 |
| PctI | GAATGC | 4 cut(s) | 256, 495, 1122, 1853 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2240 |
| PfeI | GAWTC | 6 cut(s) | 205, 1226, 1466, 1694, 1796, 2186 |
| PfoI | TCCNGGA | 1 cut(s) | 172 |
| PkrI | GCNGC | 3 cut(s) | 49, 101, 2133 |
| PleI | GAGTC | 3 cut(s) | 1113, 1140, 1684 |
| PpsI | GAGTC | 3 cut(s) | 1113, 1140, 1684 |
| Ppu21I | YACGTR | 1 cut(s) | 236 |
| PpuMI | RGGWCCY | 1 cut(s) | 1203 |
| PscI | ACATGT | 1 cut(s) | 2206 |
| Psp5II | RGGWCCY | 1 cut(s) | 1203 |
| Psp6I | CCWGG | 4 cut(s) | 172, 458, 641, 1000 |
| PspEI | GGTNACC | 1 cut(s) | 1855 |
| PspFI | CCCAGC | 1 cut(s) | 1403 |
| PspGI | CCWGG | 4 cut(s) | 172, 458, 641, 1000 |
| PspN4I | GGNNCC | 4 cut(s) | 744, 1041, 1435, 1484 |
| PspPI | GGNCC | 5 cut(s) | 722, 884, 976, 1203, 1433 |
| PspPPI | RGGWCCY | 1 cut(s) | 1203 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1506, 1538 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1679 |
| PsuI | RGATCY | 3 cut(s) | 1396, 2083, 2230 |
| PvuII | CAGCTG | 2 cut(s) | 102, 1592 |
| RsaI | GTAC | 5 cut(s) | 694, 1515, 1789, 1930, 2216 |
| RsaNI | GTAC | 5 cut(s) | 693, 1514, 1788, 1929, 2215 |
| RseI | CAYNNNNRTG | 5 cut(s) | 55, 65, 149, 1922, 1941 |
| SapI | GCTCTTC | 2 cut(s) | 172, 2022 |
| SaqAI | TTAA | 9 cut(s) | 110, 296, 365, 387, 510, 525, 966, 1164, 1263 |
| SatI | GCNGC | 3 cut(s) | 48, 100, 2132 |
| Sau3AI | GATC | 8 cut(s) | 245, 267, 502, 928, 1396, 1620, 2083, 2230 |
| Sau96I | GGNCC | 5 cut(s) | 722, 884, 976, 1203, 1433 |
| SchI | GAGTC | 3 cut(s) | 1114, 1141, 1685 |
| ScrFI | CCNGG | 5 cut(s) | 174, 448, 460, 643, 1002 |
| SduI | GDGCHC | 2 cut(s) | 62, 1042 |
| SexAI | ACCWGGT | 1 cut(s) | 641 |
| SfaNI | GCATC | 5 cut(s) | 59, 548, 659, 868, 1804 |
| SfuI | TTCGAA | 1 cut(s) | 227 |
| SinI | GGWCC | 3 cut(s) | 722, 976, 1203 |
| SmiI | ATTTAAAT | 1 cut(s) | 366 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 55, 65, 149, 1922, 1941 |
| SmlI | CTYRAG | 1 cut(s) | 12 |
| SmoI | CTYRAG | 1 cut(s) | 12 |
| SnaBI | TACGTA | 1 cut(s) | 236 |
| SsiI | CCGC | 4 cut(s) | 126, 466, 854, 2131 |
| SspI | AATATT | 2 cut(s) | 319, 577 |
| SspMI | CTAG | 6 cut(s) | 24, 408, 1628, 1715, 1725, 2257 |
| StyD4I | CCNGG | 5 cut(s) | 172, 446, 458, 641, 1000 |
| StyI | CCWWGG | 4 cut(s) | 276, 738, 1206, 1809 |
| SwaI | ATTTAAAT | 1 cut(s) | 366 |
| TaaI | ACNGT | 3 cut(s) | 956, 1487, 2111 |
| TaiI | ACGT | 4 cut(s) | 65, 238, 2011, 2179 |
| TaqI | TCGA | 3 cut(s) | 227, 244, 1174 |
| TatI | WGTACW | 4 cut(s) | 692, 1513, 1787, 1928 |
| TauI | GCSGC | 1 cut(s) | 2134 |
| TfiI | GAWTC | 6 cut(s) | 205, 1226, 1466, 1694, 1796, 2186 |
| Tru1I | TTAA | 9 cut(s) | 110, 296, 365, 387, 510, 525, 966, 1164, 1263 |
| Tru9I | TTAA | 9 cut(s) | 110, 296, 365, 387, 510, 525, 966, 1164, 1263 |
| TscAI | CASTG | 5 cut(s) | 1133, 1360, 1726, 1775, 1948 |
| TseFI | GTSAC | 6 cut(s) | 421, 813, 1348, 1580, 1855, 1871 |
| TseI | GCWGC | 2 cut(s) | 47, 99 |
| Tsp45I | GTSAC | 6 cut(s) | 421, 813, 1348, 1580, 1855, 1871 |
| TspGWI | ACGGA | 4 cut(s) | 1128, 1329, 1336, 2198 |
| TspRI | CASTG | 5 cut(s) | 1133, 1360, 1726, 1775, 1948 |
| VneI | GTGCAC | 1 cut(s) | 58 |
| VpaK11BI | GGWCC | 3 cut(s) | 722, 976, 1203 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1503 |
| XapI | RAATTY | 7 cut(s) | 361, 367, 673, 838, 890, 1082, 1312 |
| XceI | RCATGY | 6 cut(s) | 148, 165, 256, 1588, 1935, 2210 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 986 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2240 |
| XspI | CTAG | 6 cut(s) | 24, 408, 1628, 1715, 1725, 2257 |
| Zsp2I | ATGCAT | 2 cut(s) | 258, 1853 |