Rorug07G0087500

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000355
Physical Location & Seq
Forward (+)
6872546 .. 6892549
20004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0087500.1

Sequence Viewer

Length: 2805 bp
ATGCCGGAATCTGAGCCAGGAACGCCGCCGGTGTCGGCGCCGGCGACACCGGGGACACCAGCTCCGCTGTTTTCAGGACTGGTCGGAAGAGTGGACTCGCTCTCGTATGACCGGAAGTCAATGCCGCGATGCAATAAGTGCTTGCCTGTGAATGCTCCCACGTGGGGTCAACCTCACTCGTGCTTCACCGACTTCCCGACTCCCGATGTCTCCCTCACCCGCAAGCTTGGAGCTGAGTTCGTGGGAACGTTCATCCTGATGTTTGCTGCTACGGCCGGACCTATCGTGAACCAGAAGTACAATGGAGCAGAGTCCCTTATCGGAAATGCAGCATGCGCCGGACTTGGAGTGATGATCGTGATTCTTTCCACGGGCCACATCTCCGGTGCACACCTGAACCCGTCTCTCACCATTGCTTTCGCCTGCCTGCGCCATTTCCCGTGGACTCAAGTCCCTGCCTACATAGCCGCCCAGGTCTCGGCATCCATCTGTGCTTGTTTTGCCCTCAAGGGGGTGTACCATCCCTACATGTCCGGCGGAGTCACGGTGCCATCTGTGAGCGATGGCCAGGCTTTTGCTCTTGAGTTCATCATCACTTTCAATCTCCTGTTCGTGGTCACTGCTGTTGCTACCGATACACGTGCGGTGGGAGAGTTGGCTGGTTTAGCTGTTGGGGCAACTGTCATGCTAAACATTCTTATAGCTGGACCATCAAGTGGCGGTTCGATGAACCCTGTGCGAACTCTGGGCCCTGCCGTGGCCGCTGGAAACTATAGGGCATTGTGGATATACCTGGTGGCCCCCACGCTGGGTGCCCTGGCCGGGGCCGGAACCTACACAGCCGTGAAGCTTCAGGGCGACGAGATAGGAGCTCCGACTCGTGAGGTCCTTGTGGACGATGGAACGTCGAGTTTGAAATTTGGATGGTATCCCCCGTTCCCTGAGGCCATAGCTTTTGGTGAAGATCTGAAAAGACATGGCATTGGTTGCCATCATCCAAAACTGTTTGTTTTACAGAGAGACGATAATATTCGTGTTATCATTACCTCCGCAAATTTAGTGCCAACACAGTGGAATGCAGTAACCAATACCATCTGGTGGCAAGATTTCCCTCGCAGAAGTGCTCCTGATTATTCATCACTTTTTACTCAATTTTCCAGCAGGGAAGTAAATCAAGACTCAAAATCAGATTTTGCTTCTTATTTGGCTGGATTTATAGCAACTCTACTGACTGACGTACCAAGTCAGGCCCAGTGGATTGTTGAGTTGGCAAAGTATGATTTTGGAGGGGCAATGGGACATTTGGTTGCTTCTGTACCTGGAATCCATTCATATAAAACTCCCTATATAATGGAATCCAGACACTATGCCTGTGCTGAACGTGGTCCATCAGGGTCATCTGGTATGAAATTCCTCGGATCAGTTGAAGCATCTGTGGTTGGTCTAAGCTACCTCTTTCACAATGCAACAGATGCAAATGGTGCAAAGCTGAAGAAACTGGCTTCATTTCTCAGGAAATCTTGTGAAAATGCGAAAGATTTATCAATTATCTTAACAAGAAAAACAAACATACCAGCAGATGCAAATGCAGTGAGCATTAATGTGTCAAATGCTATTGAGTTCTCTGAGGGAGATCGTGTTCAACTTGGGTTTTTGCCTAGAAACATTGCAAAATGGGTCTCTCCACTCTGGGATATTGGAATGTTTAGATTCTCTGGTTATGTCTGTCCTAAGGAAGCCCTTGGAGCAGCTTTAGGAGGAAACAACAAGAAAGTACGGCTGATACTACATGTGTTACAGGGACCAAAATTTCAAGATATATCAAAGATGATGCAACCTCAACATATTATTGCATTATGCTCTTTGGTTGCGGCAATTGAAAGGTGTACAGGCCTCTGGCGCCTGCAGGAGGTTTTAGGTCAATATAAATGGCCTGAATCGCTTGACTCTGAGTTTGTTTATGGTGCATCTTCAATTGGGTCAATCAATGCAAAATTTTTAGCCGAATTTTCAGCAGCTGCAGGAAAGAAATCATTTCAGTTTGATTCTGAGGAGTCTGATCCTGAGTGGGGATGTTGGAATGCTCGTCATGAATCAAAAGATCCATCCATTAGAATCATTTTTCAAACCATTGAAAGAGTGAAGAATGCACGTTGTGGAATCTTTCCTTCAAAGCGTGTTCTTTGCTTCTCTGAGAAAACATGGCAAAGGCTAAGGACGAAGTATCATGATGCAATTCCTCATCCCTGTGATAGAGTAGGACATCCAATGCATACCAAGGTGGCAAGAAGACGGTTCCAGTCTAGGACAGATGCATCTTCATGTGGTTGGGTTTATTGCGGGTCACATAACTTCAGTGCAGCTGCCTGGGGACGTTCAATTTCTAGTCCATCTGGTTTAAAAACGAATGGAAGAGGGAATGACAATTCTTCTCTGGATCAGATGCTTCATATTTGCAATTATGAACTCGGGATCATTTTCACCTTTCCCCAAACAGAGACAGACAATAGTGCTTATCAAAAGAGCACAAACTTGGATGATATTGTTTTGCCATTTGTGGTGCCTGCTCCAAAATACAAGCGAGGAGACAGGCCAGCAACAAGGCTGGCTATGTGGCAGGCACTATCTGAACTTTCTGAAAAAGAGAGAGAAAAACATAGACAGGAAGAGATGGAGGCGGAAGCTATGGAAGAGATTCTAGATGAAGATGAAGTTGTTGAGGCAACGGATTATGTTGATGAAGAGAAAGAAGATGAGAAGGCTTACGCTGAGATTTTTTGGAGCCAATCATCTCAGAGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

934

Amino Acids

102.03

Weight (kDa)

6.53

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 70 - 279 8.3e-51 Major intrinsic protein
Tyr-DNA_phospho PF06087 328 - 446 2.4e-19 Tyrosyl-DNA phosphodiesterase
HIRAN PF08797 473 - 578 6e-10 HIRAN domain
Tyr-DNA_phospho PF06087 629 - 860 6.2e-20 Tyrosyl-DNA phosphodiesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 5 cut(s) 37, 547, 812, 1899, 2560
AccB7I CCANNNNNTGG 2 cut(s) 716, 1098
AccII CGCG 1 cut(s) 127
AclI AACGTT 1 cut(s) 248
AclWI GGATC 5 cut(s) 1426, 2054, 2096, 2445, 2480
AcoI YGGCCR 4 cut(s) 273, 565, 759, 819
AcsI RAATTY 6 cut(s) 917, 1054, 1409, 1808, 1994, 2006
AcuI CTGAAG 3 cut(s) 836, 1511, 2338
AcvI CACGTG 2 cut(s) 162, 641
AcyI GRCGYC 2 cut(s) 38, 1900
AdeI CACNNNGTG 1 cut(s) 2156
AfaI GTAC 6 cut(s) 299, 518, 1239, 1317, 1776, 1888
AflIII ACRYGT 3 cut(s) 528, 638, 1789
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 7 cut(s) 16, 471, 567, 792, 816, 1318, 2366
AleI CACNNNNGTG 1 cut(s) 842
AloI GAACNNNNNNTCC 2 cut(s) 1623, 1655
Alw21I GWGCWC 4 cut(s) 391, 874, 1126, 2528
Alw26I GTCTC 7 cut(s) 214, 408, 481, 1014, 1684, 2492, 2580
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 5 cut(s) 1426, 2054, 2096, 2445, 2480
AlwNI CAGNNNCTG 1 cut(s) 2018
Ama87I CYCGRG 1 cut(s) 2468
ApaI GGGCCC 1 cut(s) 752
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 7 cut(s) 266, 329, 1748, 2015, 2018, 2360, 2363
ApoI RAATTY 6 cut(s) 917, 1054, 1409, 1808, 1994, 2006
ArsI GACNNNNNNTTYG 2 cut(s) 1937, 1969
AseI ATTAAT 1 cut(s) 1599
Asp700I GAANNNNTTC 2 cut(s) 1327, 2694
AspLEI GCGC 4 cut(s) 40, 338, 432, 1902
AsuC2I CCSGG 2 cut(s) 51, 823
AsuHPI GGTGA 5 cut(s) 178, 208, 400, 971, 2473
AvaI CYCGRG 1 cut(s) 2468
AvaII GGWCC 5 cut(s) 278, 707, 886, 1385, 1802
AxyI CCTNAGG 2 cut(s) 942, 1731
BaeGI GKGCMC 3 cut(s) 391, 752, 817
BaeI ACNNNNGTAYC 2 cut(s) 1221, 1254
BalI TGGCCA 1 cut(s) 567
BanI GGYRCC 5 cut(s) 37, 547, 812, 1899, 2560
BanII GRGCYC 2 cut(s) 752, 874
BauI CACGAG 2 cut(s) 178, 879
BbrPI CACGTG 2 cut(s) 162, 641
BbsI GAAGAC 1 cut(s) 2296
Bbv12I GWGCWC 4 cut(s) 391, 874, 1126, 2528
BbvI GCAGC 7 cut(s) 253, 341, 1760, 2005, 2027, 2350, 2372
BceAI ACGGC 4 cut(s) 288, 740, 827, 1793
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 7 cut(s) 18, 473, 569, 794, 818, 1320, 2368
BciVI GTATCC 1 cut(s) 939
BcnI CCSGG 2 cut(s) 51, 823
BcoDI GTCTC 7 cut(s) 214, 408, 481, 1014, 1684, 2492, 2580
BfaI CTAG 4 cut(s) 1659, 2304, 2385, 2699
BfmI CTRYAG 3 cut(s) 772, 1904, 2019
BfoI RGCGCY 2 cut(s) 41, 1903
BfuI GTATCC 1 cut(s) 939
BglII AGATCT 1 cut(s) 964
Bme1390I CCNGG 9 cut(s) 18, 51, 473, 569, 794, 818, 823, 1320, 2368
Bme18I GGWCC 5 cut(s) 278, 707, 886, 1385, 1802
BmeRI GACNNNNNGTC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 2468
BmrFI CCNGG 9 cut(s) 18, 51, 473, 569, 794, 818, 823, 1320, 2368
BmrI ACTGGG 1 cut(s) 1246
BmuI ACTGGG 1 cut(s) 1246
BoxI GACNNNNGTC 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 2296
Bpu10I CCTNAGC 1 cut(s) 2213
BpuEI CTTGAG 3 cut(s) 432, 491, 602
BpuMI CCSGG 2 cut(s) 51, 823
BsaAI YACGTR 2 cut(s) 162, 641
BsaHI GRCGYC 2 cut(s) 38, 1900
BsaI GGTCTC 2 cut(s) 481, 1684
BsaWI WCCGGW 2 cut(s) 111, 383
BsaXI ACNNNNNCTCC 6 cut(s) 46, 76, 531, 561, 1623, 1653
Bse118I RCCGGY 2 cut(s) 28, 40
Bse1I ACTGG 4 cut(s) 84, 1252, 1503, 2299
Bse21I CCTNAGG 2 cut(s) 942, 1731
Bse3DI GCAATG 3 cut(s) 411, 1299, 1665
BseBI CCWGG 7 cut(s) 18, 473, 569, 794, 818, 1320, 2368
BseMI GCAATG 3 cut(s) 411, 1299, 1665
BseMII CTCAG 9 cut(s) 225, 933, 1525, 1617, 1941, 2040, 2055, 2184, 2760
BseNI ACTGG 4 cut(s) 84, 1252, 1503, 2299
BseRI GAGGAG 2 cut(s) 2066, 2598
BseSI GKGCMC 3 cut(s) 391, 752, 817
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 7 cut(s) 253, 341, 1760, 2005, 2027, 2350, 2372
BseYI CCCAGC 1 cut(s) 808
BsgI GTGCAG 1 cut(s) 2379
Bsh1236I CGCG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 276
BshNI GGYRCC 5 cut(s) 37, 547, 812, 1899, 2560
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 4 cut(s) 391, 874, 1126, 2528
BsiHKCI CYCGRG 1 cut(s) 2468
BslFI GGGAC 6 cut(s) 67, 298, 437, 1311, 1815, 2385
BsmAI GTCTC 7 cut(s) 214, 408, 481, 1014, 1684, 2492, 2580
BsmBI CGTCTC 2 cut(s) 408, 1014
BsmFI GGGAC 6 cut(s) 67, 298, 437, 1311, 1815, 2385
BsmI GAATGC 4 cut(s) 157, 1081, 2086, 2152
Bso31I GGTCTC 2 cut(s) 481, 1684
BsoBI CYCGRG 1 cut(s) 2468
Bsp120I GGGCCC 1 cut(s) 748
Bsp1286I GDGCHC 6 cut(s) 391, 752, 817, 874, 1126, 2528
Bsp1407I TGTACA 1 cut(s) 1886
Bsp143I GATC 8 cut(s) 354, 964, 1418, 1633, 2059, 2101, 2437, 2472
BspFNI CGCG 1 cut(s) 127
BspHI TCATGA 2 cut(s) 2089, 2227
BspMAI CTGCAG 2 cut(s) 1908, 2023
BspPI GGATC 5 cut(s) 1426, 2054, 2096, 2445, 2480
BspT107I GGYRCC 5 cut(s) 37, 547, 812, 1899, 2560
BspTNI GGTCTC 2 cut(s) 481, 1684
BsrDI GCAATG 3 cut(s) 411, 1299, 1665
BsrFI RCCGGY 2 cut(s) 28, 40
BsrGI TGTACA 1 cut(s) 1886
BsrI ACTGG 4 cut(s) 84, 1252, 1503, 2299
BssAI RCCGGY 2 cut(s) 28, 40
BssMI GATC 8 cut(s) 354, 964, 1418, 1633, 2059, 2101, 2437, 2472
BssNI GRCGYC 2 cut(s) 38, 1900
BssSI CACGAG 2 cut(s) 178, 879
BssT1I CCWWGG 2 cut(s) 1741, 2277
Bst2BI CACGAG 2 cut(s) 178, 879
Bst2UI CCWGG 7 cut(s) 18, 473, 569, 794, 818, 1320, 2368
Bst4CI ACNGT 5 cut(s) 547, 682, 1005, 1071, 2295
Bst6I CTCTTC 5 cut(s) 82, 2407, 2661, 2685, 2736
BstACI GRCGYC 2 cut(s) 38, 1900
BstAPI GCANNNNNTGC 4 cut(s) 138, 987, 1472, 1481
BstAUI TGTACA 1 cut(s) 1886
BstBAI YACGTR 2 cut(s) 162, 641
BstDSI CCRYGG 3 cut(s) 369, 440, 756
BstENI CCTNNNNNAGG 1 cut(s) 1907
BstFNI CGCG 1 cut(s) 127
BstH2I RGCGCY 2 cut(s) 41, 1903
BstHHI GCGC 4 cut(s) 40, 338, 432, 1902
BstKTI GATC 8 cut(s) 357, 967, 1421, 1636, 2062, 2104, 2440, 2475
BstMAI GTCTC 7 cut(s) 214, 408, 481, 1014, 1684, 2492, 2580
BstMBI GATC 8 cut(s) 354, 964, 1418, 1633, 2059, 2101, 2437, 2472
BstMCI CGRYCG 1 cut(s) 276
BstNI CCWGG 7 cut(s) 18, 473, 569, 794, 818, 1320, 2368
BstNSI RCATGY 3 cut(s) 336, 532, 1793
BstPAI GACNNNNGTC 1 cut(s) 449
BstSCI CCNGG 9 cut(s) 16, 49, 471, 567, 792, 816, 821, 1318, 2366
BstSFI CTRYAG 3 cut(s) 772, 1904, 2019
BstSLI GKGCMC 3 cut(s) 391, 752, 817
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 7 cut(s) 253, 341, 1760, 2005, 2027, 2350, 2372
BstV2I GAAGAC 1 cut(s) 2296
BstX2I RGATCY 2 cut(s) 964, 2101
BstXI CCANNNNNNTGG 1 cut(s) 1071
BstYI RGATCY 2 cut(s) 964, 2101
BstZI CGGCCG 1 cut(s) 273
Bsu36I CCTNAGG 2 cut(s) 942, 1731
BsuI GTATCC 1 cut(s) 939
BtgI CCRYGG 3 cut(s) 369, 440, 756
BtgZI GCGATG 2 cut(s) 142, 576
BtsI GCAGTG 2 cut(s) 618, 1596
BtsIMutI CAGTG 5 cut(s) 618, 1076, 1259, 1596, 2362
CaiI CAGNNNCTG 1 cut(s) 2018
CciI TCATGA 2 cut(s) 2089, 2227
CfoI GCGC 4 cut(s) 40, 338, 432, 1902
Cfr10I RCCGGY 2 cut(s) 28, 40
CsiI ACCWGGT 1 cut(s) 792
Csp6I GTAC 6 cut(s) 298, 517, 1238, 1316, 1775, 1887
CviAII CATG 9 cut(s) 333, 529, 685, 977, 1790, 2090, 2202, 2228, 2322
CviQI GTAC 6 cut(s) 298, 517, 1238, 1316, 1775, 1887
DinI GGCGCC 2 cut(s) 39, 1901
DpnI GATC 8 cut(s) 356, 966, 1420, 1635, 2061, 2103, 2439, 2474
DpnII GATC 8 cut(s) 354, 964, 1418, 1633, 2059, 2101, 2437, 2472
DraI TTTAAA 1 cut(s) 2400
DraIII CACNNNGTG 1 cut(s) 2156
DriI GACNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 4 cut(s) 273, 565, 759, 819
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 5 cut(s) 82, 2407, 2661, 2685, 2736
Eam1105I GACNNNNNGTC 1 cut(s) 115
EarI CTCTTC 5 cut(s) 82, 2407, 2661, 2685, 2736
EciI GGCGGA 2 cut(s) 552, 2693
Ecl136II GAGCTC 1 cut(s) 872
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 2 cut(s) 1741, 2277
Eco147I AGGCCT 1 cut(s) 1893
Eco24I GRGCYC 2 cut(s) 752, 874
Eco31I GGTCTC 2 cut(s) 481, 1684
Eco47I GGWCC 5 cut(s) 278, 707, 886, 1385, 1802
Eco52I CGGCCG 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 872
Eco57I CTGAAG 3 cut(s) 836, 1511, 2338
Eco72I CACGTG 2 cut(s) 162, 641
Eco81I CCTNAGG 2 cut(s) 942, 1731
Eco88I CYCGRG 1 cut(s) 2468
EcoICRI GAGCTC 1 cut(s) 872
EcoNI CCTNNNNNAGG 1 cut(s) 1907
EcoO109I RGGNCCY 2 cut(s) 749, 886
EcoRII CCWGG 7 cut(s) 16, 471, 567, 792, 816, 1318, 2366
EcoT14I CCWWGG 2 cut(s) 1741, 2277
EcoT22I ATGCAT 2 cut(s) 2274, 2317
EcoT38I GRGCYC 2 cut(s) 752, 874
EgeI GGCGCC 2 cut(s) 39, 1901
EheI GGCGCC 2 cut(s) 39, 1901
ErhI CCWWGG 2 cut(s) 1741, 2277
Esp3I CGTCTC 2 cut(s) 408, 1014
FaeI CATG 9 cut(s) 336, 532, 688, 980, 1793, 2093, 2205, 2231, 2325
FaqI GGGAC 6 cut(s) 67, 298, 437, 1311, 1815, 2385
FatI CATG 9 cut(s) 332, 528, 684, 976, 1789, 2089, 2201, 2227, 2321
FauI CCCGC 2 cut(s) 227, 2333
FriOI GRGCYC 2 cut(s) 752, 874
FspBI CTAG 4 cut(s) 1659, 2304, 2385, 2699
GlaI GCGC 4 cut(s) 39, 337, 431, 1901
GsaI CCCAGC 1 cut(s) 812
HaeII RGCGCY 2 cut(s) 41, 1903
HhaI GCGC 4 cut(s) 40, 338, 432, 1902
Hin1I GRCGYC 2 cut(s) 38, 1900
Hin1II CATG 9 cut(s) 336, 532, 688, 980, 1793, 2093, 2205, 2231, 2325
Hin6I GCGC 4 cut(s) 38, 336, 430, 1900
HinP1I GCGC 4 cut(s) 38, 336, 430, 1900
HincII GTYRAC 1 cut(s) 170
HindII GTYRAC 1 cut(s) 170
HindIII AAGCTT 2 cut(s) 224, 848
HphI GGTGA 5 cut(s) 178, 208, 400, 971, 2473
Hpy166II GTNNAC 8 cut(s) 94, 170, 289, 389, 444, 517, 895, 1887
Hpy8I GTNNAC 8 cut(s) 94, 170, 289, 389, 444, 517, 895, 1887
Hpy99I CGWCG 2 cut(s) 863, 910
HpyAV CCTTC 2 cut(s) 2178, 2752
HpyCH4III ACNGT 5 cut(s) 547, 682, 1005, 1071, 2295
HpyCH4IV ACGT 8 cut(s) 161, 248, 640, 905, 1236, 1381, 2152, 2374
HpySE526I ACGT 8 cut(s) 161, 248, 640, 905, 1236, 1381, 2152, 2374
Hsp92I GRCGYC 2 cut(s) 38, 1900
Hsp92II CATG 9 cut(s) 336, 532, 688, 980, 1793, 2093, 2205, 2231, 2325
HspAI GCGC 4 cut(s) 38, 336, 430, 1900
KasI GGCGCC 2 cut(s) 37, 1899
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Kzo9I GATC 8 cut(s) 354, 964, 1418, 1633, 2059, 2101, 2437, 2472
Lsp1109I GCAGC 7 cut(s) 253, 341, 1760, 2005, 2027, 2350, 2372
MabI ACCWGGT 1 cut(s) 792
MaeI CTAG 4 cut(s) 1659, 2304, 2385, 2699
MaeII ACGT 8 cut(s) 161, 248, 640, 905, 1236, 1381, 2152, 2374
MaeIII GTNAC 5 cut(s) 541, 616, 1081, 1794, 2343
MalI GATC 8 cut(s) 356, 966, 1420, 1635, 2061, 2103, 2439, 2474
MboI GATC 8 cut(s) 354, 964, 1418, 1633, 2059, 2101, 2437, 2472
MfeI CAATTG 2 cut(s) 1875, 1974
MflI RGATCY 2 cut(s) 964, 2101
MhlI GDGCHC 6 cut(s) 391, 752, 817, 874, 1126, 2528
MlsI TGGCCA 1 cut(s) 567
MluNI TGGCCA 1 cut(s) 567
Mly113I GGCGCC 2 cut(s) 38, 1900
MlyI GAGTC 9 cut(s) 89, 193, 320, 439, 549, 871, 1172, 1940, 2063
MmeI TCCRAC 3 cut(s) 64, 899, 2057
Mox20I TGGCCA 1 cut(s) 567
Mph1103I ATGCAT 2 cut(s) 2274, 2317
MreI CGCCGGCG 1 cut(s) 40
MroNI GCCGGC 1 cut(s) 40
MroXI GAANNNNTTC 2 cut(s) 1327, 2694
MscI TGGCCA 1 cut(s) 567
MseI TTAA 3 cut(s) 1553, 1599, 2399
MslI CAYNNNNRTG 5 cut(s) 257, 842, 1601, 2247, 2320
Msp20I TGGCCA 1 cut(s) 567
MspA1I CMGCKG 4 cut(s) 67, 764, 2018, 2363
MspR9I CCNGG 9 cut(s) 18, 51, 473, 569, 794, 818, 823, 1320, 2368
MunI CAATTG 2 cut(s) 1875, 1974
Mva1269I GAATGC 4 cut(s) 157, 1081, 2086, 2152
MvaI CCWGG 7 cut(s) 18, 473, 569, 794, 818, 1320, 2368
MvnI CGCG 1 cut(s) 127
NaeI GCCGGC 1 cut(s) 42
NarI GGCGCC 2 cut(s) 38, 1900
NciI CCSGG 2 cut(s) 51, 823
NdeII GATC 8 cut(s) 354, 964, 1418, 1633, 2059, 2101, 2437, 2472
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 9 cut(s) 336, 532, 688, 980, 1793, 2093, 2205, 2231, 2325
NmeAIII GCCGAG 1 cut(s) 458
NmuCI GTSAC 3 cut(s) 541, 616, 2343
NsiI ATGCAT 2 cut(s) 2274, 2317
NspI RCATGY 3 cut(s) 336, 532, 1793
OliI CACNNNNGTG 1 cut(s) 842
PaeI GCATGC 1 cut(s) 336
PagI TCATGA 2 cut(s) 2089, 2227
PceI AGGCCT 1 cut(s) 1893
PciI ACATGT 2 cut(s) 528, 1789
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PctI GAATGC 4 cut(s) 157, 1081, 2086, 2152
PdiI GCCGGC 1 cut(s) 42
PdmI GAANNNNTTC 2 cut(s) 1327, 2694
PflMI CCANNNNNTGG 2 cut(s) 716, 1098
PleI GAGTC 9 cut(s) 89, 193, 319, 439, 548, 871, 1172, 1940, 2062
PluTI GGCGCC 2 cut(s) 41, 1903
PmaCI CACGTG 2 cut(s) 162, 641
PmlI CACGTG 2 cut(s) 162, 641
PpsI GAGTC 9 cut(s) 89, 193, 319, 439, 548, 871, 1172, 1940, 2062
Ppu21I YACGTR 2 cut(s) 162, 641
PpuMI RGGWCCY 1 cut(s) 886
PscI ACATGT 2 cut(s) 528, 1789
PshAI GACNNNNGTC 1 cut(s) 449
PshBI ATTAAT 1 cut(s) 1599
Psp124BI GAGCTC 1 cut(s) 874
Psp1406I AACGTT 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 886
Psp6I CCWGG 7 cut(s) 16, 471, 567, 792, 816, 1318, 2366
PspCI CACGTG 2 cut(s) 162, 641
PspFI CCCAGC 1 cut(s) 808
PspGI CCWGG 7 cut(s) 16, 471, 567, 792, 816, 1318, 2366
PspOMI GGGCCC 1 cut(s) 748
PspPPI RGGWCCY 1 cut(s) 886
PsrI GAACNNNNNNTAC 4 cut(s) 281, 313, 920, 952
PstI CTGCAG 2 cut(s) 1908, 2023
PstNI CAGNNNCTG 1 cut(s) 2018
PsuI RGATCY 2 cut(s) 964, 2101
PvuII CAGCTG 2 cut(s) 2018, 2363
RsaI GTAC 6 cut(s) 299, 518, 1239, 1317, 1776, 1888
RsaNI GTAC 6 cut(s) 298, 517, 1238, 1316, 1775, 1887
RseI CAYNNNNRTG 5 cut(s) 257, 842, 1601, 2247, 2320
SacI GAGCTC 1 cut(s) 874
SaqAI TTAA 3 cut(s) 1553, 1599, 2399
Sau3AI GATC 8 cut(s) 354, 964, 1418, 1633, 2059, 2101, 2437, 2472
SbfI CCTGCAGG 1 cut(s) 1908
SchI GAGTC 9 cut(s) 89, 193, 320, 439, 549, 871, 1172, 1940, 2063
ScrFI CCNGG 9 cut(s) 18, 51, 473, 569, 794, 818, 823, 1320, 2368
SdaI CCTGCAGG 1 cut(s) 1908
SduI GDGCHC 6 cut(s) 391, 752, 817, 874, 1126, 2528
SexAI ACCWGGT 1 cut(s) 792
SfcI CTRYAG 3 cut(s) 772, 1904, 2019
SfoI GGCGCC 2 cut(s) 39, 1901
SgrAI CRCCGGYG 2 cut(s) 28, 40
SinI GGWCC 5 cut(s) 278, 707, 886, 1385, 1802
SmiMI CAYNNNNRTG 5 cut(s) 257, 842, 1601, 2247, 2320
SmlI CTYRAG 3 cut(s) 447, 506, 581
SmoI CTYRAG 3 cut(s) 447, 506, 581
SphI GCATGC 1 cut(s) 336
Sse8387I CCTGCAGG 1 cut(s) 1908
SseBI AGGCCT 1 cut(s) 1893
SspDI GGCGCC 2 cut(s) 37, 1899
SspI AATATT 1 cut(s) 1030
SspMI CTAG 4 cut(s) 1659, 2304, 2385, 2699
SstI GAGCTC 1 cut(s) 874
StuI AGGCCT 1 cut(s) 1893
StyD4I CCNGG 9 cut(s) 16, 49, 471, 567, 792, 816, 821, 1318, 2366
StyI CCWWGG 2 cut(s) 1741, 2277
TaaI ACNGT 5 cut(s) 547, 682, 1005, 1071, 2295
TaiI ACGT 8 cut(s) 164, 251, 643, 908, 1239, 1384, 2155, 2377
TaqI TCGA 2 cut(s) 725, 908
TatI WGTACW 2 cut(s) 297, 1886
TauI GCSGC 5 cut(s) 28, 127, 470, 764, 1874
Tru1I TTAA 3 cut(s) 1553, 1599, 2399
Tru9I TTAA 3 cut(s) 1553, 1599, 2399
TscAI CASTG 5 cut(s) 625, 1076, 1259, 1596, 2362
TseFI GTSAC 3 cut(s) 541, 616, 2343
TseI GCWGC 7 cut(s) 266, 329, 1748, 2015, 2018, 2360, 2363
Tsp45I GTSAC 3 cut(s) 541, 616, 2343
TspGWI ACGGA 1 cut(s) 2741
TspRI CASTG 5 cut(s) 625, 1076, 1259, 1596, 2362
Van91I CCANNNNNTGG 2 cut(s) 716, 1098
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 5 cut(s) 278, 707, 886, 1385, 1802
VspI ATTAAT 1 cut(s) 1599
XagI CCTNNNNNAGG 1 cut(s) 1907
XapI RAATTY 6 cut(s) 917, 1054, 1409, 1808, 1994, 2006
XbaI TCTAGA 1 cut(s) 2698
XceI RCATGY 3 cut(s) 336, 532, 1793
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmnI GAANNNNTTC 2 cut(s) 1327, 2694
XspI CTAG 4 cut(s) 1659, 2304, 2385, 2699
Zsp2I ATGCAT 2 cut(s) 2274, 2317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.