histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2859 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1877 |
| AccB1I | GGYRCC | 1 cut(s) | 2679 |
| AccI | GTMKAC | 3 cut(s) | 1203, 1386, 2649 |
| AciI | CCGC | 5 cut(s) | 468, 2003, 2683, 2891, 3273 |
| AclWI | GGATC | 3 cut(s) | 2356, 2764, 2928 |
| AcoI | YGGCCR | 1 cut(s) | 2484 |
| AcuI | CTGAAG | 4 cut(s) | 2036, 2310, 2937, 3027 |
| AfaI | GTAC | 6 cut(s) | 252, 481, 598, 2550, 2713, 3394 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 185, 1213, 1396, 1832, 1891, 2069, 2698, 2699 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1908 |
| AhlI | ACTAGT | 2 cut(s) | 920, 2186 |
| AjnI | CCWGG | 2 cut(s) | 1640, 2068 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 846, 878, 2039, 2071 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 930, 962 |
| Alw21I | GWGCWC | 2 cut(s) | 116, 2988 |
| Alw26I | GTCTC | 7 cut(s) | 208, 332, 368, 550, 560, 1895, 2457 |
| AlwI | GGATC | 3 cut(s) | 2356, 2764, 2928 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2732 |
| Ama87I | CYCGRG | 3 cut(s) | 178, 1336, 2544 |
| AoxI | GGCC | 5 cut(s) | 465, 1333, 2060, 2251, 2484 |
| ApeKI | GCWGC | 5 cut(s) | 590, 1514, 2000, 2562, 3155 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 841, 1782 |
| AspLEI | GCGC | 1 cut(s) | 150 |
| AspS9I | GGNCC | 5 cut(s) | 1334, 2060, 2176, 2251, 2828 |
| AsuC2I | CCSGG | 4 cut(s) | 179, 180, 1337, 1338 |
| AsuII | TTCGAA | 1 cut(s) | 1094 |
| AvaI | CYCGRG | 3 cut(s) | 178, 1336, 2544 |
| AvaII | GGWCC | 2 cut(s) | 2176, 2828 |
| BalI | TGGCCA | 1 cut(s) | 2486 |
| BanI | GGYRCC | 1 cut(s) | 2679 |
| BanII | GRGCYC | 1 cut(s) | 2988 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1291, 1323 |
| BbsI | GAAGAC | 3 cut(s) | 1785, 2117, 3000 |
| Bbv12I | GWGCWC | 2 cut(s) | 116, 2988 |
| BbvCI | CCTCAGC | 1 cut(s) | 486 |
| BbvI | GCAGC | 5 cut(s) | 577, 1501, 2012, 2549, 3167 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 343, 377 |
| BciT130I | CCWGG | 2 cut(s) | 1642, 2070 |
| BciVI | GTATCC | 1 cut(s) | 1738 |
| BclI | TGATCA | 1 cut(s) | 3232 |
| BcnI | CCSGG | 4 cut(s) | 179, 180, 1337, 1338 |
| BcoDI | GTCTC | 7 cut(s) | 208, 332, 368, 550, 560, 1895, 2457 |
| BcuI | ACTAGT | 2 cut(s) | 920, 2186 |
| BfaI | CTAG | 7 cut(s) | 681, 921, 1364, 1619, 1851, 2187, 3246 |
| BfmI | CTRYAG | 4 cut(s) | 882, 1695, 2115, 2563 |
| BfuI | GTATCC | 1 cut(s) | 1738 |
| BglII | AGATCT | 2 cut(s) | 452, 1625 |
| BisI | GCNGC | 9 cut(s) | 468, 591, 1515, 2001, 2004, 2563, 2683, 3156, 3273 |
| BlsI | GCNGC | 9 cut(s) | 469, 592, 1516, 2002, 2005, 2564, 2684, 3157, 3274 |
| Bme1390I | CCNGG | 6 cut(s) | 179, 180, 1337, 1338, 1642, 2070 |
| Bme18I | GGWCC | 2 cut(s) | 2176, 2828 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1908 |
| BmeT110I | CYCGRG | 3 cut(s) | 178, 1336, 2544 |
| BmgT120I | GGNCC | 5 cut(s) | 1334, 2060, 2176, 2251, 2828 |
| BmiI | GGNNCC | 4 cut(s) | 1275, 2061, 2286, 2681 |
| BmrFI | CCNGG | 6 cut(s) | 179, 180, 1337, 1338, 1642, 2070 |
| BmrI | ACTGGG | 2 cut(s) | 121, 2591 |
| BmsI | GCATC | 4 cut(s) | 303, 2207, 3091, 3142 |
| BmuI | ACTGGG | 2 cut(s) | 121, 2591 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2402 |
| BpiI | GAAGAC | 3 cut(s) | 1785, 2117, 3000 |
| BpmI | CTGGAG | 1 cut(s) | 3369 |
| Bpu10I | CCTNAGC | 1 cut(s) | 486 |
| Bpu14I | TTCGAA | 1 cut(s) | 1094 |
| BpuEI | CTTGAG | 3 cut(s) | 1113, 1296, 1781 |
| BpuMI | CCSGG | 4 cut(s) | 179, 180, 1337, 1338 |
| Bsa29I | ATCGAT | 1 cut(s) | 363 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3030 |
| BsaI | GGTCTC | 3 cut(s) | 208, 550, 2457 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 930, 960, 2250, 2280 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 185, 1213, 1396, 1832, 1891, 2069, 2698, 2699 |
| Bse118I | RCCGGY | 1 cut(s) | 3395 |
| Bse1I | ACTGG | 5 cut(s) | 127, 556, 2487, 2586, 3022 |
| Bse3DI | GCAATG | 5 cut(s) | 17, 757, 1144, 1904, 3175 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3030 |
| BseBI | CCWGG | 2 cut(s) | 1642, 2070 |
| BseCI | ATCGAT | 1 cut(s) | 363 |
| BseJI | GATNNNNATC | 1 cut(s) | 3030 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 185, 1213, 1396, 1832, 1891, 2069, 2698, 2699 |
| BseMI | GCAATG | 5 cut(s) | 17, 757, 1144, 1904, 3175 |
| BseMII | CTCAG | 4 cut(s) | 212, 477, 2724, 2739 |
| BseNI | ACTGG | 5 cut(s) | 127, 556, 2487, 2586, 3022 |
| BseRI | GAGGAG | 4 cut(s) | 777, 1190, 1373, 1815 |
| BseXI | GCAGC | 5 cut(s) | 577, 1501, 2012, 2549, 3167 |
| BsgI | GTGCAG | 1 cut(s) | 2769 |
| BshFI | GGCC | 5 cut(s) | 467, 1335, 2062, 2253, 2486 |
| BshNI | GGYRCC | 1 cut(s) | 2679 |
| BshVI | ATCGAT | 1 cut(s) | 363 |
| BsiHKAI | GWGCWC | 2 cut(s) | 116, 2988 |
| BsiHKCI | CYCGRG | 3 cut(s) | 178, 1336, 2544 |
| BsiSI | CCGG | 3 cut(s) | 179, 1337, 3396 |
| BslFI | GGGAC | 3 cut(s) | 99, 827, 2051 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 185, 1213, 1396, 1832, 1891, 2069, 2698, 2699 |
| BsmAI | GTCTC | 7 cut(s) | 208, 332, 368, 550, 560, 1895, 2457 |
| BsmFI | GGGAC | 3 cut(s) | 99, 827, 2051 |
| BsmI | GAATGC | 1 cut(s) | 1714 |
| BsnI | GGCC | 5 cut(s) | 467, 1335, 2062, 2253, 2486 |
| Bso31I | GGTCTC | 3 cut(s) | 208, 550, 2457 |
| BsoBI | CYCGRG | 3 cut(s) | 178, 1336, 2544 |
| Bsp119I | TTCGAA | 1 cut(s) | 1094 |
| Bsp1286I | GDGCHC | 2 cut(s) | 116, 2988 |
| Bsp19I | CCATGG | 1 cut(s) | 96 |
| BspACI | CCGC | 5 cut(s) | 468, 2003, 2683, 2891, 3273 |
| BspANI | GGCC | 5 cut(s) | 467, 1335, 2062, 2253, 2486 |
| BspCNI | CTCAG | 4 cut(s) | 211, 478, 2725, 2738 |
| BspDI | ATCGAT | 1 cut(s) | 363 |
| BspHI | TCATGA | 2 cut(s) | 1861, 3235 |
| BspLI | GGNNCC | 4 cut(s) | 1275, 2061, 2286, 2681 |
| BspMAI | CTGCAG | 1 cut(s) | 2567 |
| BspPI | GGATC | 3 cut(s) | 2356, 2764, 2928 |
| BspT104I | TTCGAA | 1 cut(s) | 1094 |
| BspT107I | GGYRCC | 1 cut(s) | 2679 |
| BspTNI | GGTCTC | 3 cut(s) | 208, 550, 2457 |
| BsrDI | GCAATG | 5 cut(s) | 17, 757, 1144, 1904, 3175 |
| BsrFI | RCCGGY | 1 cut(s) | 3395 |
| BsrI | ACTGG | 5 cut(s) | 127, 556, 2487, 2586, 3022 |
| BssAI | RCCGGY | 1 cut(s) | 3395 |
| BssNAI | GTATAC | 3 cut(s) | 1204, 1387, 2650 |
| BssT1I | CCWWGG | 4 cut(s) | 96, 1717, 2254, 2697 |
| Bst1107I | GTATAC | 3 cut(s) | 1204, 1387, 2650 |
| Bst2UI | CCWGG | 2 cut(s) | 1642, 2070 |
| Bst4CI | ACNGT | 9 cut(s) | 370, 571, 610, 1022, 1879, 2333, 2716, 3065, 3108 |
| Bst6I | CTCTTC | 4 cut(s) | 456, 790, 828, 3359 |
| BstBI | TTCGAA | 1 cut(s) | 1094 |
| BstC8I | GCNNGC | 4 cut(s) | 1556, 2722, 2873, 3401 |
| BstDSI | CCRYGG | 3 cut(s) | 96, 1529, 2365 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2067 |
| BstHHI | GCGC | 1 cut(s) | 150 |
| BstMAI | GTCTC | 7 cut(s) | 208, 332, 368, 550, 560, 1895, 2457 |
| BstNI | CCWGG | 2 cut(s) | 1642, 2070 |
| BstNSI | RCATGY | 1 cut(s) | 2724 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2402 |
| BstSCI | CCNGG | 6 cut(s) | 177, 178, 1335, 1336, 1640, 2068 |
| BstSFI | CTRYAG | 4 cut(s) | 882, 1695, 2115, 2563 |
| BstV1I | GCAGC | 5 cut(s) | 577, 1501, 2012, 2549, 3167 |
| BstV2I | GAAGAC | 3 cut(s) | 1785, 2117, 3000 |
| BstX2I | RGATCY | 4 cut(s) | 452, 1625, 2769, 2933 |
| BstYI | RGATCY | 4 cut(s) | 452, 1625, 2769, 2933 |
| BstZ17I | GTATAC | 3 cut(s) | 1204, 1387, 2650 |
| Bsu15I | ATCGAT | 1 cut(s) | 363 |
| BsuI | GTATCC | 1 cut(s) | 1738 |
| BsuRI | GGCC | 5 cut(s) | 467, 1335, 2062, 2253, 2486 |
| BsuTUI | ATCGAT | 1 cut(s) | 363 |
| BtgI | CCRYGG | 3 cut(s) | 96, 1529, 2365 |
| BtgZI | GCGATG | 2 cut(s) | 303, 2114 |
| BtsI | GCAGTG | 1 cut(s) | 2572 |
| BtsIMutI | CAGTG | 2 cut(s) | 2572, 2579 |
| Cac8I | GCNNGC | 4 cut(s) | 1556, 2722, 2873, 3401 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2732 |
| CciI | TCATGA | 2 cut(s) | 1861, 3235 |
| CfoI | GCGC | 1 cut(s) | 150 |
| Cfr10I | RCCGGY | 1 cut(s) | 3395 |
| Cfr13I | GGNCC | 5 cut(s) | 1334, 2060, 2176, 2251, 2828 |
| Cfr9I | CCCGGG | 2 cut(s) | 178, 1336 |
| ClaI | ATCGAT | 1 cut(s) | 363 |
| CseI | GACGC | 2 cut(s) | 1626, 1898 |
| Csp6I | GTAC | 6 cut(s) | 251, 480, 597, 2549, 2712, 3393 |
| CviQI | GTAC | 6 cut(s) | 251, 480, 597, 2549, 2712, 3393 |
| DraI | TTTAAA | 2 cut(s) | 1609, 2905 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1877 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1908 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1877 |
| EaeI | YGGCCR | 1 cut(s) | 2484 |
| Eam1104I | CTCTTC | 4 cut(s) | 456, 790, 828, 3359 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1908 |
| EarI | CTCTTC | 4 cut(s) | 456, 790, 828, 3359 |
| Ecl136II | GAGCTC | 1 cut(s) | 2986 |
| Eco130I | CCWWGG | 4 cut(s) | 96, 1717, 2254, 2697 |
| Eco24I | GRGCYC | 1 cut(s) | 2988 |
| Eco31I | GGTCTC | 3 cut(s) | 208, 550, 2457 |
| Eco47I | GGWCC | 2 cut(s) | 2176, 2828 |
| Eco53kI | GAGCTC | 1 cut(s) | 2986 |
| Eco57I | CTGAAG | 4 cut(s) | 2036, 2310, 2937, 3027 |
| Eco88I | CYCGRG | 3 cut(s) | 178, 1336, 2544 |
| EcoICRI | GAGCTC | 1 cut(s) | 2986 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2067 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2060, 2176 |
| EcoRI | GAATTC | 3 cut(s) | 1753, 2490, 3249 |
| EcoRII | CCWGG | 2 cut(s) | 1640, 2068 |
| EcoT14I | CCWWGG | 4 cut(s) | 96, 1717, 2254, 2697 |
| EcoT38I | GRGCYC | 1 cut(s) | 2988 |
| ErhI | CCWWGG | 4 cut(s) | 96, 1717, 2254, 2697 |
| FaqI | GGGAC | 3 cut(s) | 99, 827, 2051 |
| FbaI | TGATCA | 1 cut(s) | 3232 |
| FblI | GTMKAC | 3 cut(s) | 1203, 1386, 2649 |
| Fnu4HI | GCNGC | 9 cut(s) | 468, 591, 1515, 2001, 2004, 2563, 2683, 3156, 3273 |
| FriOI | GRGCYC | 1 cut(s) | 2988 |
| Fsp4HI | GCNGC | 9 cut(s) | 468, 591, 1515, 2001, 2004, 2563, 2683, 3156, 3273 |
| FspBI | CTAG | 7 cut(s) | 681, 921, 1364, 1619, 1851, 2187, 3246 |
| GlaI | GCGC | 1 cut(s) | 149 |
| GluI | GCNGC | 9 cut(s) | 468, 591, 1515, 2001, 2004, 2563, 2683, 3156, 3273 |
| GsuI | CTGGAG | 1 cut(s) | 3369 |
| HaeIII | GGCC | 5 cut(s) | 467, 1335, 2062, 2253, 2486 |
| HapII | CCGG | 3 cut(s) | 179, 1337, 3396 |
| HgaI | GACGC | 2 cut(s) | 1626, 1898 |
| HhaI | GCGC | 1 cut(s) | 150 |
| Hin6I | GCGC | 1 cut(s) | 148 |
| HinP1I | GCGC | 1 cut(s) | 148 |
| HincII | GTYRAC | 4 cut(s) | 1654, 2755, 3187, 3303 |
| HindII | GTYRAC | 4 cut(s) | 1654, 2755, 3187, 3303 |
| HindIII | AAGCTT | 2 cut(s) | 2300, 2462 |
| HpaI | GTTAAC | 1 cut(s) | 2755 |
| HpaII | CCGG | 3 cut(s) | 179, 1337, 3396 |
| Hpy99I | CGWCG | 1 cut(s) | 40 |
| HpyCH4III | ACNGT | 9 cut(s) | 370, 571, 610, 1022, 1879, 2333, 2716, 3065, 3108 |
| HpyCH4IV | ACGT | 2 cut(s) | 1804, 2403 |
| HpySE526I | ACGT | 2 cut(s) | 1804, 2403 |
| HspAI | GCGC | 1 cut(s) | 148 |
| Ksp22I | TGATCA | 1 cut(s) | 3232 |
| KspAI | GTTAAC | 1 cut(s) | 2755 |
| LmnI | GCTCC | 2 cut(s) | 1360, 2991 |
| Lsp1109I | GCAGC | 5 cut(s) | 577, 1501, 2012, 2549, 3167 |
| LweI | GCATC | 4 cut(s) | 303, 2207, 3091, 3142 |
| MaeI | CTAG | 7 cut(s) | 681, 921, 1364, 1619, 1851, 2187, 3246 |
| MaeII | ACGT | 2 cut(s) | 1804, 2403 |
| MaeIII | GTNAC | 6 cut(s) | 129, 326, 388, 887, 1766, 1879 |
| MfeI | CAATTG | 3 cut(s) | 45, 378, 1445 |
| MflI | RGATCY | 4 cut(s) | 452, 1625, 2769, 2933 |
| MhlI | GDGCHC | 2 cut(s) | 116, 2988 |
| MlsI | TGGCCA | 1 cut(s) | 2486 |
| MluNI | TGGCCA | 1 cut(s) | 2486 |
| MlyI | GAGTC | 5 cut(s) | 41, 1649, 1786, 2146, 2600 |
| MmeI | TCCRAC | 2 cut(s) | 1144, 1327 |
| Mox20I | TGGCCA | 1 cut(s) | 2486 |
| MroXI | GAANNNNTTC | 2 cut(s) | 841, 1782 |
| MscI | TGGCCA | 1 cut(s) | 2486 |
| MslI | CAYNNNNRTG | 3 cut(s) | 72, 333, 1866 |
| Msp20I | TGGCCA | 1 cut(s) | 2486 |
| MspA1I | CMGCKG | 2 cut(s) | 806, 2003 |
| MspI | CCGG | 3 cut(s) | 179, 1337, 3396 |
| MspR9I | CCNGG | 6 cut(s) | 179, 180, 1337, 1338, 1642, 2070 |
| MunI | CAATTG | 3 cut(s) | 45, 378, 1445 |
| Mva1269I | GAATGC | 1 cut(s) | 1714 |
| MvaI | CCWGG | 2 cut(s) | 1642, 2070 |
| NciI | CCSGG | 4 cut(s) | 179, 180, 1337, 1338 |
| NcoI | CCATGG | 1 cut(s) | 96 |
| NlaIV | GGNNCC | 4 cut(s) | 1275, 2061, 2286, 2681 |
| NmeAIII | GCCGAG | 1 cut(s) | 3301 |
| NmuCI | GTSAC | 5 cut(s) | 129, 326, 887, 1766, 1879 |
| NspI | RCATGY | 1 cut(s) | 2724 |
| NspV | TTCGAA | 1 cut(s) | 1094 |
| PaeI | GCATGC | 1 cut(s) | 2724 |
| PaeR7I | CTCGAG | 1 cut(s) | 2544 |
| PagI | TCATGA | 2 cut(s) | 1861, 3235 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 911 |
| PctI | GAATGC | 1 cut(s) | 1714 |
| PdmI | GAANNNNTTC | 2 cut(s) | 841, 1782 |
| PfoI | TCCNGGA | 1 cut(s) | 1640 |
| PkrI | GCNGC | 9 cut(s) | 469, 592, 1516, 2002, 2005, 2564, 2684, 3157, 3274 |
| PleI | GAGTC | 5 cut(s) | 40, 1649, 1786, 2145, 2599 |
| PpsI | GAGTC | 5 cut(s) | 40, 1649, 1786, 2145, 2599 |
| PpuMI | RGGWCCY | 1 cut(s) | 2176 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2402 |
| PsiI | TTATAA | 1 cut(s) | 2859 |
| Psp124BI | GAGCTC | 1 cut(s) | 2988 |
| Psp5II | RGGWCCY | 1 cut(s) | 2176 |
| Psp6I | CCWGG | 2 cut(s) | 1640, 2068 |
| PspGI | CCWGG | 2 cut(s) | 1640, 2068 |
| PspN4I | GGNNCC | 4 cut(s) | 1275, 2061, 2286, 2681 |
| PspPI | GGNCC | 5 cut(s) | 1334, 2060, 2176, 2251, 2828 |
| PspPPI | RGGWCCY | 1 cut(s) | 2176 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 792, 824 |
| PstI | CTGCAG | 1 cut(s) | 2567 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2732 |
| PsuI | RGATCY | 4 cut(s) | 452, 1625, 2769, 2933 |
| PvuII | CAGCTG | 1 cut(s) | 806 |
| RsaI | GTAC | 6 cut(s) | 252, 481, 598, 2550, 2713, 3394 |
| RsaNI | GTAC | 6 cut(s) | 251, 480, 597, 2549, 2712, 3393 |
| RseI | CAYNNNNRTG | 3 cut(s) | 72, 333, 1866 |
| SacI | GAGCTC | 1 cut(s) | 2988 |
| SatI | GCNGC | 9 cut(s) | 468, 591, 1515, 2001, 2004, 2563, 2683, 3156, 3273 |
| Sau96I | GGNCC | 5 cut(s) | 1334, 2060, 2176, 2251, 2828 |
| SchI | GAGTC | 5 cut(s) | 41, 1649, 1786, 2146, 2600 |
| ScrFI | CCNGG | 6 cut(s) | 179, 180, 1337, 1338, 1642, 2070 |
| SduI | GDGCHC | 2 cut(s) | 116, 2988 |
| SfaNI | GCATC | 4 cut(s) | 303, 2207, 3091, 3142 |
| SfcI | CTRYAG | 4 cut(s) | 882, 1695, 2115, 2563 |
| Sfr274I | CTCGAG | 1 cut(s) | 2544 |
| SfuI | TTCGAA | 1 cut(s) | 1094 |
| SinI | GGWCC | 2 cut(s) | 2176, 2828 |
| SlaI | CTCGAG | 1 cut(s) | 2544 |
| SmaI | CCCGGG | 2 cut(s) | 180, 1338 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 72, 333, 1866 |
| SmlI | CTYRAG | 4 cut(s) | 1128, 1311, 1760, 2544 |
| SmoI | CTYRAG | 4 cut(s) | 1128, 1311, 1760, 2544 |
| SpeI | ACTAGT | 2 cut(s) | 920, 2186 |
| SphI | GCATGC | 1 cut(s) | 2724 |
| SsiI | CCGC | 5 cut(s) | 468, 2003, 2683, 2891, 3273 |
| SspMI | CTAG | 7 cut(s) | 681, 921, 1364, 1619, 1851, 2187, 3246 |
| SstI | GAGCTC | 1 cut(s) | 2988 |
| StyD4I | CCNGG | 6 cut(s) | 177, 178, 1335, 1336, 1640, 2068 |
| StyI | CCWWGG | 4 cut(s) | 96, 1717, 2254, 2697 |
| TaaI | ACNGT | 9 cut(s) | 370, 571, 610, 1022, 1879, 2333, 2716, 3065, 3108 |
| TaiI | ACGT | 2 cut(s) | 1807, 2406 |
| TaqI | TCGA | 7 cut(s) | 38, 363, 790, 905, 1094, 2494, 2545 |
| TaqII | GACCGA | 1 cut(s) | 1887 |
| TatI | WGTACW | 1 cut(s) | 2711 |
| TauI | GCSGC | 4 cut(s) | 470, 2006, 2685, 3275 |
| TscAI | CASTG | 2 cut(s) | 2572, 2586 |
| TseFI | GTSAC | 5 cut(s) | 129, 326, 887, 1766, 1879 |
| TseI | GCWGC | 5 cut(s) | 590, 1514, 2000, 2562, 3155 |
| Tsp45I | GTSAC | 5 cut(s) | 129, 326, 887, 1766, 1879 |
| TspGWI | ACGGA | 4 cut(s) | 1518, 2040, 2354, 2775 |
| TspMI | CCCGGG | 2 cut(s) | 178, 1336 |
| TspRI | CASTG | 2 cut(s) | 2572, 2586 |
| VpaK11BI | GGWCC | 2 cut(s) | 2176, 2828 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2067 |
| XceI | RCATGY | 1 cut(s) | 2724 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2141 |
| XhoI | CTCGAG | 1 cut(s) | 2544 |
| XmaI | CCCGGG | 2 cut(s) | 178, 1336 |
| XmiI | GTMKAC | 3 cut(s) | 1203, 1386, 2649 |
| XmnI | GAANNNNTTC | 2 cut(s) | 841, 1782 |
| XspI | CTAG | 7 cut(s) | 681, 921, 1364, 1619, 1851, 2187, 3246 |