Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8353775.1

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1053

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8353775.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ggctgaaggcaaaagaggtcgagaaacctaaatcaaatggtggtatgagtgaaagcaaacagaagaaaccagatggtggtatgagtggaagaaaacggaagaaaacagatggtatgagtgaaagaaaacagaaaaacccaggtggtggtgtaagtgaatgcaaaccaaaaacacctgattttaaatgtgagtcagaaggatctaattctactgcccaaggtacaagccagcagcttgttattagggatgaggatgtgattccaatatcatgttatacacatgtgtgccctcctccttttggtcagagtagttcaagcaatgaagttcgtgatgatggtgcaattgtcacccgaaacaaggtgagggagacattgcggctttttcaagctgtttataggaagctcttgcaggaggatgaagcgaagtcaaaggaaggaggcaactcccgcagaaggtttgatcttcaagcagcaaagatcctcaaggaaaaaggaaaatacgtaaatcttggcaaacaaatcttgggagctgttccaggagtggaagtcggtgatgagtttcattatagagtggaacttaatatgattggcctacaccgccaaattcaaggtggtatagattatgttaggcatggggagacaatccttgctaccagtattgttgcatcaggggggtatgctgatgctttggataattcaagttccttgatttatacgggccaaggaggaaatgtgataaatacagaaaaggaacctgaagatcagaagcttgaacggggaaaccttgctttgaagaatagtctgcatgaaaagaatcctgttagagtgattcgtgggtctgaatcatcagatggaaaatctaggacatatgtctatgacgggctatatttggtagagaaatgttggcaagatttggggcctcataataagctggtttataagtttcagctggacagaattgggggtcaaccagagcttgcttggaaagaactgaagaagtccaaaaaatttcaaatacgtgaaggtatctgtgtcgatgatatttcaggaggca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

350

Amino Acids

38.72

Weight (kDa)

9.12

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	938
AccB7I	CCANNNNNTGG	2 cut(s)	76, 145
AciI	CCGC	3 cut(s)	375, 447, 597
AclWI	GGATC	2 cut(s)	207, 471
AcsI	RAATTY	2 cut(s)	602, 1006
AcuI	CTGAAG	3 cut(s)	25, 776, 1012
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	5 cut(s)	76, 145, 298, 357, 452
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	8 cut(s)	314, 385, 466, 607, 698, 772, 792, 1012
AjnI	CCWGG	2 cut(s)	138, 534
AleI	CACNNNNGTG	1 cut(s)	282
AluBI	AGCT	8 cut(s)	234, 388, 402, 529, 768, 930, 948, 975
AluI	AGCT	8 cut(s)	234, 388, 402, 529, 768, 930, 948, 975
Alw26I	GTCTC	2 cut(s)	361, 631
AlwI	GGATC	2 cut(s)	207, 471
AoxI	GGCC	3 cut(s)	588, 717, 916
ApeKI	GCWGC	2 cut(s)	231, 469
ApoI	RAATTY	2 cut(s)	602, 1006
AspS9I	GGNCC	2 cut(s)	717, 916
AsuHPI	GGTGA	3 cut(s)	339, 372, 562
BaeGI	GKGCMC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	243, 481
BccI	CCATC	4 cut(s)	67, 103, 328, 844
BciT130I	CCWGG	2 cut(s)	140, 536
BcoDI	GTCTC	2 cut(s)	361, 631
BfaI	CTAG	1 cut(s)	860
BisI	GCNGC	3 cut(s)	232, 376, 470
BlsI	GCNGC	3 cut(s)	233, 377, 471
Bme1390I	CCNGG	2 cut(s)	140, 536
BmgT120I	GGNCC	2 cut(s)	717, 916
BmiI	GGNNCC	2 cut(s)	752, 917
BmrFI	CCNGG	2 cut(s)	140, 536
BmsI	GCATC	2 cut(s)	672, 673
BoxI	GACNNNNGTC	1 cut(s)	868
BpuEI	CTTGAG	1 cut(s)	466
BsaAI	YACGTR	2 cut(s)	501, 1018
BsaJI	CCNNGG	3 cut(s)	138, 216, 720
BsaXI	ACNNNNNCTCC	4 cut(s)	530, 560, 716, 746
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 145, 298, 357, 452
Bse1I	ACTGG	1 cut(s)	653
Bse3DI	GCAATG	2 cut(s)	324, 370
BseBI	CCWGG	2 cut(s)	140, 536
BseDI	CCNNGG	3 cut(s)	138, 216, 720
BseGI	GGATG	3 cut(s)	252, 258, 420
BseLI	CCNNNNNNNGG	5 cut(s)	76, 145, 298, 357, 452
BseMI	GCAATG	2 cut(s)	324, 370
BseNI	ACTGG	1 cut(s)	653
BseRI	GAGGAG	1 cut(s)	281
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	2 cut(s)	243, 481
BshFI	GGCC	3 cut(s)	590, 719, 918
BslI	CCNNNNNNNGG	5 cut(s)	76, 145, 298, 357, 452
BsmAI	GTCTC	2 cut(s)	361, 631
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	590, 719, 918
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	4 cut(s)	199, 459, 476, 759
BspACI	CCGC	3 cut(s)	375, 447, 597
BspANI	GGCC	3 cut(s)	590, 719, 918
BspLI	GGNNCC	2 cut(s)	752, 917
BspPI	GGATC	2 cut(s)	207, 471
BsrDI	GCAATG	2 cut(s)	324, 370
BsrI	ACTGG	1 cut(s)	653
BssECI	CCNNGG	3 cut(s)	138, 216, 720
BssMI	GATC	4 cut(s)	199, 459, 476, 759
BssT1I	CCWWGG	2 cut(s)	216, 720
Bst2UI	CCWGG	2 cut(s)	140, 536
BstBAI	YACGTR	2 cut(s)	501, 1018
BstC8I	GCNNGC	2 cut(s)	229, 977
BstF5I	GGATG	3 cut(s)	252, 258, 420
BstKTI	GATC	4 cut(s)	202, 462, 479, 762
BstMAI	GTCTC	2 cut(s)	361, 631
BstMBI	GATC	4 cut(s)	199, 459, 476, 759
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 596
BstNI	CCWGG	2 cut(s)	140, 536
BstNSI	RCATGY	1 cut(s)	283
BstPAI	GACNNNNGTC	1 cut(s)	868
BstSCI	CCNGG	2 cut(s)	138, 534
BstSLI	GKGCMC	1 cut(s)	289
BstSNI	TACGTA	1 cut(s)	501
BstV1I	GCAGC	2 cut(s)	243, 481
BstX2I	RGATCY	2 cut(s)	199, 476
BstYI	RGATCY	2 cut(s)	199, 476
BsuRI	GGCC	3 cut(s)	590, 719, 918
BtsCI	GGATG	3 cut(s)	252, 258, 420
Cac8I	GCNNGC	2 cut(s)	229, 977
Cfr13I	GGNCC	2 cut(s)	717, 916
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	4 cut(s)	269, 280, 631, 805
CviQI	GTAC	1 cut(s)	221
DpnI	GATC	4 cut(s)	201, 461, 478, 761
DpnII	GATC	4 cut(s)	199, 459, 476, 759
DraI	TTTAAA	1 cut(s)	183
Eco105I	TACGTA	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	216, 720
Eco57I	CTGAAG	3 cut(s)	25, 776, 1012
EcoO109I	RGGNCCY	1 cut(s)	916
EcoRII	CCWGG	2 cut(s)	138, 534
EcoT14I	CCWWGG	2 cut(s)	216, 720
ErhI	CCWWGG	2 cut(s)	216, 720
FaeI	CATG	4 cut(s)	272, 283, 634, 808
FatI	CATG	4 cut(s)	268, 279, 630, 804
FauI	CCCGC	1 cut(s)	454
FauNDI	CATATG	1 cut(s)	867
Fnu4HI	GCNGC	3 cut(s)	232, 376, 470
FokI	GGATG	3 cut(s)	259, 265, 427
Fsp4HI	GCNGC	3 cut(s)	232, 376, 470
FspBI	CTAG	1 cut(s)	860
GluI	GCNGC	3 cut(s)	232, 376, 470
HaeIII	GGCC	3 cut(s)	590, 719, 918
Hin1II	CATG	4 cut(s)	272, 283, 634, 808
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HindIII	AAGCTT	1 cut(s)	766
HinfI	GANTC	5 cut(s)	190, 258, 813, 828, 841
HphI	GGTGA	3 cut(s)	339, 372, 562
Hpy166II	GTNNAC	1 cut(s)	967
Hpy188I	TCNGA	5 cut(s)	195, 305, 764, 840, 849
Hpy188III	TCNNGA	3 cut(s)	21, 328, 1046
Hpy8I	GTNNAC	1 cut(s)	967
HpyAV	CCTTC	4 cut(s)	190, 427, 446, 1015
HpyCH4IV	ACGT	2 cut(s)	500, 1017
HpyCH4V	TGCA	5 cut(s)	161, 340, 408, 664, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 596
HpySE526I	ACGT	2 cut(s)	500, 1017
Hsp92II	CATG	4 cut(s)	272, 283, 634, 808
Kzo9I	GATC	4 cut(s)	199, 459, 476, 759
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	2 cut(s)	243, 481
LweI	GCATC	2 cut(s)	672, 673
MaeI	CTAG	1 cut(s)	860
MaeII	ACGT	2 cut(s)	500, 1017
MaeIII	GTNAC	1 cut(s)	345
MalI	GATC	4 cut(s)	201, 461, 478, 761
MboI	GATC	4 cut(s)	199, 459, 476, 759
MboII	GAAGA	7 cut(s)	75, 101, 111, 454, 769, 804, 1005
MfeI	CAATTG	1 cut(s)	341
MflI	RGATCY	2 cut(s)	199, 476
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	6 cut(s)	204, 341, 602, 693, 956, 1006
MlyI	GAGTC	1 cut(s)	199
MseI	TTAA	2 cut(s)	182, 578
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	948
MspR9I	CCNGG	2 cut(s)	140, 536
MunI	CAATTG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	2 cut(s)	140, 536
MwoI	GCNNNNNNNGC	2 cut(s)	446, 596
NdeI	CATATG	1 cut(s)	867
NdeII	GATC	4 cut(s)	199, 459, 476, 759
NlaIII	CATG	4 cut(s)	272, 283, 634, 808
NlaIV	GGNNCC	2 cut(s)	752, 917
NmuCI	GTSAC	1 cut(s)	345
NspI	RCATGY	1 cut(s)	283
OliI	CACNNNNGTG	1 cut(s)	282
PciI	ACATGT	1 cut(s)	279
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	4 cut(s)	258, 813, 828, 841
PflMI	CCANNNNNTGG	2 cut(s)	76, 145
PfoI	TCCNGGA	1 cut(s)	534
PkrI	GCNGC	3 cut(s)	233, 377, 471
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
Ppu21I	YACGTR	2 cut(s)	501, 1018
PscI	ACATGT	1 cut(s)	279
PshAI	GACNNNNGTC	1 cut(s)	868
PsiI	TTATAA	1 cut(s)	938
Psp6I	CCWGG	2 cut(s)	138, 534
PspGI	CCWGG	2 cut(s)	138, 534
PspN4I	GGNNCC	2 cut(s)	752, 917
PspPI	GGNCC	2 cut(s)	717, 916
PsuI	RGATCY	2 cut(s)	199, 476
PvuII	CAGCTG	1 cut(s)	948
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	182, 578
SatI	GCNGC	3 cut(s)	232, 376, 470
Sau3AI	GATC	4 cut(s)	199, 459, 476, 759
Sau96I	GGNCC	2 cut(s)	717, 916
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	140, 536
SduI	GDGCHC	1 cut(s)	289
SfaNI	GCATC	2 cut(s)	672, 673
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
SnaBI	TACGTA	1 cut(s)	501
Sse9I	AATT	6 cut(s)	204, 341, 602, 693, 956, 1006
SsiI	CCGC	3 cut(s)	375, 447, 597
SspMI	CTAG	1 cut(s)	860
StyD4I	CCNGG	2 cut(s)	138, 534
StyI	CCWWGG	2 cut(s)	216, 720
TaiI	ACGT	2 cut(s)	503, 1020
TaqI	TCGA	2 cut(s)	20, 1034
TasI	AATT	6 cut(s)	204, 341, 602, 693, 956, 1006
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	4 cut(s)	258, 813, 828, 841
Tru1I	TTAA	2 cut(s)	182, 578
Tru9I	TTAA	2 cut(s)	182, 578
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	2 cut(s)	231, 469
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	4 cut(s)	335, 431, 550, 821
TspGWI	ACGGA	1 cut(s)	111
Van91I	CCANNNNNTGG	2 cut(s)	76, 145
XapI	RAATTY	2 cut(s)	602, 1006
XceI	RCATGY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	2 cut(s)	607, 977
XspI	CTAG	1 cut(s)	860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.