Prupe.5G057000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000355
Physical Location & Seq
Reverse (-)
6158371 .. 6161139
2769 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G057000.1

Sequence Viewer

Length: 1506 bp
ATGGGGGTCGTAGGGACGACGAAGCATTTGGAATCATCGAGAATAATTGCTCCGCTTGATGTAAGTCATTCTGATGAAAGACTGGGACAATTTACCATGGAAAATGGTGAGTTCTTTTTCCATACCAAGTCACCTAAGTTCAAGAGGCAGATAGTATCTGCTGTTCGTGATTTCCCCCCAGGGTGTGGACGATTTGCTCGTTTGAACTCTTTGAGACATGCTAAGGATGCCACTTCTGTGCGTACTTCCGACAGTGTACCAACAGAAAGTTTGGTTAGTAGGGGTAAAAATGTTGGTGGACATCGGGGGGTTGAAAAGCTGATGCTCTCAAATGGTCAGGGAGACGAGACTAACTTGATGAATAGTAATGATGTGGATTCTGTGGAGACAGTTGAATCAGTAAGCGCCTTGGAGCATGAAAGATCTGATTCTCTGAAGAATCTACTTCAGTTAAACAATTTGAGACCTGTTGAAGAGGCAGCTTCTGTTGGTACTGCGGAGAGTTTGATCAGCAGGGATACTAATGTTGATGGAAAAAGGGTTGAAAACTTAACTGATCATGTGCATGAGACTGACTTGATGAATGGTAAGGCTTCTGGTACTGTGGAGATGATTGTACCTGTGACAGATTTGGAGCATGAAGCATCTGATTTGCTAAAGAGTATGCATCAGTTGTCAAACAATTTGAGACCTGTTGACGAGGTAGCTTCTGTTGGTACTGCTGAGTATTTTCTGAGAAGGGGTAAGAATGGTGATGGACAGGAGATTGATAAGCTGATGGTGTCAACTGGTCAGGTGGATGAGACTGTCTCGATGACTGTGGAGACGGTTGAATCTTTAACGGCCTTACAGAATGAAGTATCTGATTTGTTGAAGAACCCATATCAGATTGGCGTGGCTACTCCAAAGGAAGAGATGGTTACTGTTCTTTCAGATAGAAATTTTTGTTCGCCACCTGATGGATCCATTTCTGTTTCTGTTTCTTTTGGAAATGGTCTTGAGAAGACTGCAGCGAAGAAATGTCCTTCTCGAAGACTAGTATCAGCCATTCGGGACTTCCCTCCTCTCTGTGGAAGAAATGCTTGTAAGTTTGGTCAAGTGAAGTCGTGTATGGGTGCTGAACCATCACAATCGAACAAAGCGAAGACTAGTGTAAAACAAATAAGAGAGGATTTTCAAGAAGAGTTTCATAAGAATGAATTGGGAGGGAATGTTTCTGAAGTTATTAGAGACAAGGTTCAACCTAAATGCAAGGGGCATGCTGTACAAGAAATGGAGAGACGAGATAAATGTAAACCAAGTTATAAGCCGAAGGTGGTTTGGAAAGATTCAAGAGAAAAGTGCATTGAGAAAAGTCCACAAGAAAGTTCACAACCGTCGAATAGGGTAATTGTGCTGGCTTTGATGGCTCCGTCAAATTCTCAATTTAGGAAGGGGAGAAGGGTCCGCAGGCATATACCAGATGGTGGTATGAGTGAAAGGAAACGAAAGAATCTTAAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

502

Amino Acids

55.34

Weight (kDa)

8.41

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1305
AccB7I CCANNNNNTGG 3 cut(s) 185, 959, 1466
AciI CCGC 3 cut(s) 53, 497, 1447
AclWI GGATC 2 cut(s) 957, 970
AcsI RAATTY 2 cut(s) 940, 1417
AcuI CTGAAG 3 cut(s) 431, 455, 1239
AfaI GTAC 7 cut(s) 244, 258, 493, 601, 618, 718, 1266
AfiI CCNNNNNNNGG 4 cut(s) 185, 959, 1070, 1466
AhlI ACTAGT 2 cut(s) 1036, 1148
AjnI CCWGG 1 cut(s) 178
AleI CACNNNNGTG 1 cut(s) 236
AluBI AGCT 4 cut(s) 319, 482, 707, 775
AluI AGCT 4 cut(s) 319, 482, 707, 775
AlwI GGATC 2 cut(s) 957, 970
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 1 cut(s) 843
ApeKI GCWGC 2 cut(s) 479, 1010
ApoI RAATTY 2 cut(s) 940, 1417
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
Asp700I GAANNNNTTC 1 cut(s) 1185
AspLEI GCGC 1 cut(s) 407
AspS9I GGNCC 1 cut(s) 1444
AsuHPI GGTGA 3 cut(s) 119, 123, 764
AvaII GGWCC 1 cut(s) 1444
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BamHI GGATCC 1 cut(s) 962
BbsI GAAGAC 3 cut(s) 1010, 1039, 1151
BbvI GCAGC 2 cut(s) 491, 1022
BccI CCATC 8 cut(s) 524, 749, 772, 910, 953, 1132, 1399, 1457
BceAI ACGGC 1 cut(s) 858
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 511
BclI TGATCA 2 cut(s) 507, 556
BcuI ACTAGT 2 cut(s) 1036, 1148
BfaI CTAG 2 cut(s) 1037, 1149
BfmI CTRYAG 1 cut(s) 1008
BfoI RGCGCY 1 cut(s) 408
BfuI GTATCC 1 cut(s) 511
BglII AGATCT 1 cut(s) 422
BisI GCNGC 2 cut(s) 480, 1011
BlsI GCNGC 2 cut(s) 481, 1012
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 1444
BmgT120I GGNCC 1 cut(s) 1444
BmiI GGNNCC 3 cut(s) 964, 1410, 1445
BmrFI CCNGG 1 cut(s) 180
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 4 cut(s) 217, 312, 653, 676
BmuI ACTGGG 1 cut(s) 92
BpiI GAAGAC 3 cut(s) 1010, 1039, 1151
BplI GAGNNNNNCTC 2 cut(s) 794, 826
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 1019
BsaI GGTCTC 2 cut(s) 457, 682
BsaJI CCNNGG 4 cut(s) 96, 178, 179, 408
BsaXI ACNNNNNCTCC 2 cut(s) 1197, 1227
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 959, 1070, 1466
Bse1I ACTGG 2 cut(s) 87, 793
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 4 cut(s) 96, 178, 179, 408
BseGI GGATG 2 cut(s) 232, 805
BseLI CCNNNNNNNGG 4 cut(s) 185, 959, 1070, 1466
BseMII CTCAG 2 cut(s) 714, 725
BseNI ACTGG 2 cut(s) 87, 793
BseRI GAGGAG 1 cut(s) 1053
BseXI GCAGC 2 cut(s) 491, 1022
BshFI GGCC 1 cut(s) 845
BslFI GGGAC 3 cut(s) 28, 99, 1067
BslI CCNNNNNNNGG 4 cut(s) 185, 959, 1070, 1466
BsmBI CGTCTC 3 cut(s) 336, 818, 1273
BsmFI GGGAC 3 cut(s) 28, 99, 1067
BsnI GGCC 1 cut(s) 845
Bso31I GGTCTC 2 cut(s) 457, 682
Bsp1407I TGTACA 1 cut(s) 1264
Bsp143I GATC 4 cut(s) 422, 507, 556, 962
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 3 cut(s) 53, 497, 1447
BspANI GGCC 1 cut(s) 845
BspCNI CTCAG 2 cut(s) 715, 726
BspLI GGNNCC 3 cut(s) 964, 1410, 1445
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 2 cut(s) 957, 970
BspTNI GGTCTC 2 cut(s) 457, 682
BsrGI TGTACA 1 cut(s) 1264
BsrI ACTGG 2 cut(s) 87, 793
BssECI CCNNGG 4 cut(s) 96, 178, 179, 408
BssMI GATC 4 cut(s) 422, 507, 556, 962
BssT1I CCWWGG 2 cut(s) 96, 408
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 8 cut(s) 254, 391, 604, 808, 820, 829, 925, 1377
Bst6I CTCTTC 3 cut(s) 468, 906, 1176
BstAUI TGTACA 1 cut(s) 1264
BstC8I GCNNGC 3 cut(s) 1260, 1398, 1451
BstDEI CTNAG 4 cut(s) 135, 222, 723, 734
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 232, 805
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 4 cut(s) 425, 510, 559, 965
BstMBI GATC 4 cut(s) 422, 507, 556, 962
BstMWI GCNNNNNNNGC 2 cut(s) 227, 1406
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 2 cut(s) 221, 1262
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 1008
BstV1I GCAGC 2 cut(s) 491, 1022
BstV2I GAAGAC 3 cut(s) 1010, 1039, 1151
BstX2I RGATCY 2 cut(s) 422, 962
BstYI RGATCY 2 cut(s) 422, 962
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 1 cut(s) 845
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 232, 805
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 3 cut(s) 1260, 1398, 1451
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 1444
Csp6I GTAC 7 cut(s) 243, 257, 492, 600, 617, 717, 1265
CviAII CATG 7 cut(s) 97, 218, 416, 560, 566, 638, 1259
CviQI GTAC 7 cut(s) 243, 257, 492, 600, 617, 717, 1265
DdeI CTNAG 4 cut(s) 135, 222, 723, 734
DpnI GATC 4 cut(s) 424, 509, 558, 964
DpnII GATC 4 cut(s) 422, 507, 556, 962
Eam1104I CTCTTC 3 cut(s) 468, 906, 1176
EarI CTCTTC 3 cut(s) 468, 906, 1176
Eco130I CCWWGG 2 cut(s) 96, 408
Eco31I GGTCTC 2 cut(s) 457, 682
Eco47I GGWCC 1 cut(s) 1444
Eco57I CTGAAG 3 cut(s) 431, 455, 1239
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 96, 408
EcoT22I ATGCAT 1 cut(s) 669
ErhI CCWWGG 2 cut(s) 96, 408
Esp3I CGTCTC 3 cut(s) 336, 818, 1273
FaeI CATG 7 cut(s) 100, 221, 419, 563, 569, 641, 1262
FalI AAGNNNNNCTT 2 cut(s) 1066, 1098
FaqI GGGAC 3 cut(s) 28, 99, 1067
FatI CATG 7 cut(s) 96, 217, 415, 559, 565, 637, 1258
FbaI TGATCA 2 cut(s) 507, 556
Fnu4HI GCNGC 2 cut(s) 480, 1011
FokI GGATG 2 cut(s) 239, 812
Fsp4HI GCNGC 2 cut(s) 480, 1011
FspBI CTAG 2 cut(s) 1037, 1149
GlaI GCGC 1 cut(s) 406
GluI GCNGC 2 cut(s) 480, 1011
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 1 cut(s) 845
HhaI GCGC 1 cut(s) 407
Hin1II CATG 7 cut(s) 100, 221, 419, 563, 569, 641, 1262
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HincII GTYRAC 2 cut(s) 697, 786
HindII GTYRAC 2 cut(s) 697, 786
HinfI GANTC 8 cut(s) 32, 377, 395, 428, 439, 833, 1328, 1492
HphI GGTGA 3 cut(s) 119, 123, 764
Hpy166II GTNNAC 8 cut(s) 188, 257, 299, 697, 786, 1295, 1358, 1370
Hpy188III TCNNGA 9 cut(s) 39, 142, 167, 811, 998, 1029, 1052, 1178, 1332
Hpy8I GTNNAC 8 cut(s) 188, 257, 299, 697, 786, 1295, 1358, 1370
Hpy99I CGWCG 2 cut(s) 22, 1381
HpyAV CCTTC 5 cut(s) 732, 1035, 1306, 1426, 1434
HpyCH4III ACNGT 8 cut(s) 254, 391, 604, 808, 820, 829, 925, 1377
HpyCH4V TGCA 5 cut(s) 565, 667, 1010, 1251, 1344
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 1406
HpyF3I CTNAG 4 cut(s) 135, 222, 723, 734
Hsp92II CATG 7 cut(s) 100, 221, 419, 563, 569, 641, 1262
HspAI GCGC 1 cut(s) 405
Ksp22I TGATCA 2 cut(s) 507, 556
Kzo9I GATC 4 cut(s) 422, 507, 556, 962
LmnI GCTCC 4 cut(s) 55, 412, 634, 1414
Lsp1109I GCAGC 2 cut(s) 491, 1022
LweI GCATC 4 cut(s) 217, 312, 653, 676
MaeI CTAG 2 cut(s) 1037, 1149
MaeIII GTNAC 3 cut(s) 129, 622, 919
MalI GATC 4 cut(s) 424, 509, 558, 964
MboI GATC 4 cut(s) 422, 507, 556, 962
MflI RGATCY 2 cut(s) 422, 962
MluCI AATT 9 cut(s) 45, 89, 457, 682, 940, 1199, 1389, 1417, 1424
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 7 cut(s) 138, 469, 694, 1071, 1074, 1162, 1199
Mph1103I ATGCAT 1 cut(s) 669
MroXI GAANNNNTTC 1 cut(s) 1185
MseI TTAA 4 cut(s) 452, 551, 839, 1497
MslI CAYNNNNRTG 4 cut(s) 72, 236, 564, 1194
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 227, 1406
NcoI CCATGG 1 cut(s) 96
NdeII GATC 4 cut(s) 422, 507, 556, 962
NlaIII CATG 7 cut(s) 100, 221, 419, 563, 569, 641, 1262
NlaIV GGNNCC 3 cut(s) 964, 1410, 1445
NmuCI GTSAC 2 cut(s) 129, 622
NsiI ATGCAT 1 cut(s) 669
NspI RCATGY 2 cut(s) 221, 1262
OliI CACNNNNGTG 1 cut(s) 236
PaeI GCATGC 1 cut(s) 1262
PasI CCCWGGG 1 cut(s) 179
PcsI WCGNNNNNNNCGW 2 cut(s) 196, 1139
PdmI GAANNNNTTC 1 cut(s) 1185
PfeI GAWTC 8 cut(s) 32, 377, 395, 428, 439, 833, 1328, 1492
PflMI CCANNNNNTGG 3 cut(s) 185, 959, 1466
PkrI GCNGC 2 cut(s) 481, 1012
PsiI TTATAA 1 cut(s) 1305
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 3 cut(s) 964, 1410, 1445
PspPI GGNCC 1 cut(s) 1444
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PstI CTGCAG 1 cut(s) 1012
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 2 cut(s) 422, 962
RsaI GTAC 7 cut(s) 244, 258, 493, 601, 618, 718, 1266
RsaNI GTAC 7 cut(s) 243, 257, 492, 600, 617, 717, 1265
RseI CAYNNNNRTG 4 cut(s) 72, 236, 564, 1194
SaqAI TTAA 4 cut(s) 452, 551, 839, 1497
SatI GCNGC 2 cut(s) 480, 1011
Sau3AI GATC 4 cut(s) 422, 507, 556, 962
Sau96I GGNCC 1 cut(s) 1444
ScrFI CCNGG 1 cut(s) 180
SfaNI GCATC 4 cut(s) 217, 312, 653, 676
SfcI CTRYAG 1 cut(s) 1008
SinI GGWCC 1 cut(s) 1444
SmiMI CAYNNNNRTG 4 cut(s) 72, 236, 564, 1194
SmlI CTYRAG 1 cut(s) 998
SmoI CTYRAG 1 cut(s) 998
SpeI ACTAGT 2 cut(s) 1036, 1148
SphI GCATGC 1 cut(s) 1262
Sse9I AATT 9 cut(s) 45, 89, 457, 682, 940, 1199, 1389, 1417, 1424
SsiI CCGC 3 cut(s) 53, 497, 1447
SspMI CTAG 2 cut(s) 1037, 1149
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 2 cut(s) 96, 408
TaaI ACNGT 8 cut(s) 254, 391, 604, 808, 820, 829, 925, 1377
TaqI TCGA 5 cut(s) 38, 812, 1030, 1133, 1379
TasI AATT 9 cut(s) 45, 89, 457, 682, 940, 1199, 1389, 1417, 1424
TatI WGTACW 1 cut(s) 1264
TfiI GAWTC 8 cut(s) 32, 377, 395, 428, 439, 833, 1328, 1492
Tru1I TTAA 4 cut(s) 452, 551, 839, 1497
Tru9I TTAA 4 cut(s) 452, 551, 839, 1497
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 2 cut(s) 129, 622
TseI GCWGC 2 cut(s) 479, 1010
Tsp45I GTSAC 2 cut(s) 129, 622
TspDTI ATGAA 8 cut(s) 90, 374, 432, 596, 654, 870, 1178, 1212
TspGWI ACGGA 1 cut(s) 1401
TspRI CASTG 1 cut(s) 259
Van91I CCANNNNNTGG 3 cut(s) 185, 959, 1466
VpaK11BI GGWCC 1 cut(s) 1444
XapI RAATTY 2 cut(s) 940, 1417
XceI RCATGY 2 cut(s) 221, 1262
XmnI GAANNNNTTC 1 cut(s) 1185
XspI CTAG 2 cut(s) 1037, 1149
Zsp2I ATGCAT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.