histone-lysine N-methyltransferase, H3 lysine-9 specific
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 316 - 461 | 2e-46 | SAD/SRA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 829 |
| AccIII | TCCGGA | 1 cut(s) | 1165 |
| AciI | CCGC | 3 cut(s) | 13, 41, 387 |
| AclWI | GGATC | 1 cut(s) | 1246 |
| AcsI | RAATTY | 2 cut(s) | 980, 1123 |
| AcuI | CTGAAG | 4 cut(s) | 150, 611, 1200, 1418 |
| AfaI | GTAC | 1 cut(s) | 175 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 47, 61, 149, 266, 584, 790, 1030, 1031, 1444 |
| AflII | CTTAAG | 1 cut(s) | 887 |
| AflIII | ACRYGT | 1 cut(s) | 952 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 116, 807 |
| AhlI | ACTAGT | 1 cut(s) | 1076 |
| AjnI | CCWGG | 3 cut(s) | 142, 542, 577 |
| AleI | CACNNNNGTG | 1 cut(s) | 351 |
| AluBI | AGCT | 7 cut(s) | 343, 625, 631, 753, 821, 1192, 1412 |
| AluI | AGCT | 7 cut(s) | 343, 625, 631, 753, 821, 1192, 1412 |
| Alw26I | GTCTC | 3 cut(s) | 103, 124, 794 |
| AlwI | GGATC | 1 cut(s) | 1246 |
| Ama87I | CYCGRG | 2 cut(s) | 98, 1457 |
| Aor13HI | TCCGGA | 1 cut(s) | 1165 |
| AoxI | GGCC | 7 cut(s) | 95, 288, 561, 1141, 1340, 1453, 1477 |
| ApaI | GGGCCC | 1 cut(s) | 99 |
| ApeKI | GCWGC | 4 cut(s) | 10, 750, 753, 893 |
| ApoI | RAATTY | 2 cut(s) | 980, 1123 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 243, 342, 510 |
| AspS9I | GGNCC | 6 cut(s) | 95, 96, 562, 1141, 1340, 1454 |
| AsuC2I | CCSGG | 1 cut(s) | 960 |
| AsuHPI | GGTGA | 3 cut(s) | 805, 1013, 1400 |
| AvaI | CYCGRG | 2 cut(s) | 98, 1457 |
| BaeGI | GKGCMC | 1 cut(s) | 99 |
| BanII | GRGCYC | 1 cut(s) | 99 |
| BbsI | GAAGAC | 1 cut(s) | 725 |
| BbvI | GCAGC | 4 cut(s) | 22, 740, 762, 880 |
| BccI | CCATC | 4 cut(s) | 406, 468, 788, 1268 |
| BciT130I | CCWGG | 3 cut(s) | 144, 544, 579 |
| BciVI | GTATCC | 1 cut(s) | 1493 |
| BcnI | CCSGG | 1 cut(s) | 960 |
| BcoDI | GTCTC | 3 cut(s) | 103, 124, 794 |
| BcuI | ACTAGT | 1 cut(s) | 1076 |
| BfaI | CTAG | 8 cut(s) | 402, 632, 741, 747, 1077, 1418, 1431, 1475 |
| BfrI | CTTAAG | 1 cut(s) | 887 |
| BfuI | GTATCC | 1 cut(s) | 1493 |
| BglII | AGATCT | 1 cut(s) | 638 |
| BisI | GCNGC | 5 cut(s) | 11, 388, 751, 754, 894 |
| BlsI | GCNGC | 5 cut(s) | 12, 389, 752, 755, 895 |
| Bme1390I | CCNGG | 4 cut(s) | 144, 544, 579, 960 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 116, 807 |
| BmeT110I | CYCGRG | 2 cut(s) | 98, 1457 |
| BmgT120I | GGNCC | 6 cut(s) | 95, 96, 562, 1141, 1340, 1454 |
| BmiI | GGNNCC | 5 cut(s) | 97, 1176, 1341, 1436, 1456 |
| BmrFI | CCNGG | 4 cut(s) | 144, 544, 579, 960 |
| BmsI | GCATC | 7 cut(s) | 539, 637, 766, 1056, 1097, 1149, 1171 |
| BpiI | GAAGAC | 1 cut(s) | 725 |
| BpuEI | CTTGAG | 2 cut(s) | 360, 890 |
| BpuMI | CCSGG | 1 cut(s) | 960 |
| BsaI | GGTCTC | 1 cut(s) | 103 |
| BsaJI | CCNNGG | 7 cut(s) | 84, 143, 291, 422, 958, 1144, 1255 |
| BsaWI | WCCGGW | 1 cut(s) | 1165 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1140, 1170 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 47, 61, 149, 266, 584, 790, 1030, 1031, 1444 |
| Bse1I | ACTGG | 4 cut(s) | 730, 840, 937, 1508 |
| BseAI | TCCGGA | 1 cut(s) | 1165 |
| BseBI | CCWGG | 3 cut(s) | 144, 544, 579 |
| BseDI | CCNNGG | 7 cut(s) | 84, 143, 291, 422, 958, 1144, 1255 |
| BseGI | GGATG | 5 cut(s) | 331, 535, 780, 781, 1162 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 47, 61, 149, 266, 584, 790, 1030, 1031, 1444 |
| BseMII | CTCAG | 5 cut(s) | 51, 684, 886, 1043, 1430 |
| BseNI | ACTGG | 4 cut(s) | 730, 840, 937, 1508 |
| BseRI | GAGGAG | 2 cut(s) | 213, 597 |
| BseSI | GKGCMC | 1 cut(s) | 99 |
| BseXI | GCAGC | 4 cut(s) | 22, 740, 762, 880 |
| BshFI | GGCC | 7 cut(s) | 97, 290, 563, 1143, 1342, 1455, 1479 |
| BsiHKCI | CYCGRG | 2 cut(s) | 98, 1457 |
| BsiSI | CCGG | 2 cut(s) | 960, 1166 |
| BslFI | GGGAC | 2 cut(s) | 941, 963 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 47, 61, 149, 266, 584, 790, 1030, 1031, 1444 |
| BsmAI | GTCTC | 3 cut(s) | 103, 124, 794 |
| BsmBI | CGTCTC | 1 cut(s) | 794 |
| BsmFI | GGGAC | 2 cut(s) | 941, 963 |
| BsnI | GGCC | 7 cut(s) | 97, 290, 563, 1143, 1342, 1455, 1479 |
| Bso31I | GGTCTC | 1 cut(s) | 103 |
| BsoBI | CYCGRG | 2 cut(s) | 98, 1457 |
| Bsp120I | GGGCCC | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 1 cut(s) | 99 |
| Bsp13I | TCCGGA | 1 cut(s) | 1165 |
| Bsp143I | GATC | 4 cut(s) | 638, 883, 1183, 1251 |
| BspACI | CCGC | 3 cut(s) | 13, 41, 387 |
| BspANI | GGCC | 7 cut(s) | 97, 290, 563, 1143, 1342, 1455, 1479 |
| BspCNI | CTCAG | 5 cut(s) | 52, 683, 885, 1042, 1431 |
| BspEI | TCCGGA | 1 cut(s) | 1165 |
| BspHI | TCATGA | 1 cut(s) | 760 |
| BspLI | GGNNCC | 5 cut(s) | 97, 1176, 1341, 1436, 1456 |
| BspPI | GGATC | 1 cut(s) | 1246 |
| BspQI | GCTCTTC | 2 cut(s) | 333, 1419 |
| BspTI | CTTAAG | 1 cut(s) | 887 |
| BspTNI | GGTCTC | 1 cut(s) | 103 |
| BsrI | ACTGG | 4 cut(s) | 730, 840, 937, 1508 |
| BssECI | CCNNGG | 7 cut(s) | 84, 143, 291, 422, 958, 1144, 1255 |
| BssMI | GATC | 4 cut(s) | 638, 883, 1183, 1251 |
| BssT1I | CCWWGG | 4 cut(s) | 84, 291, 422, 1144 |
| Bst2UI | CCWGG | 3 cut(s) | 144, 544, 579 |
| Bst4CI | ACNGT | 5 cut(s) | 156, 205, 353, 793, 1406 |
| Bst6I | CTCTTC | 2 cut(s) | 333, 1419 |
| BstAFI | CTTAAG | 1 cut(s) | 887 |
| BstC8I | GCNNGC | 2 cut(s) | 528, 1071 |
| BstDEI | CTNAG | 6 cut(s) | 44, 60, 670, 872, 1029, 1439 |
| BstDSI | CCRYGG | 1 cut(s) | 1255 |
| BstF5I | GGATG | 5 cut(s) | 331, 535, 780, 781, 1162 |
| BstKTI | GATC | 4 cut(s) | 641, 886, 1186, 1254 |
| BstMAI | GTCTC | 3 cut(s) | 103, 124, 794 |
| BstMBI | GATC | 4 cut(s) | 638, 883, 1183, 1251 |
| BstNI | CCWGG | 3 cut(s) | 144, 544, 579 |
| BstNSI | RCATGY | 2 cut(s) | 956, 1228 |
| BstSCI | CCNGG | 4 cut(s) | 142, 542, 577, 958 |
| BstSLI | GKGCMC | 1 cut(s) | 99 |
| BstV1I | GCAGC | 4 cut(s) | 22, 740, 762, 880 |
| BstV2I | GAAGAC | 1 cut(s) | 725 |
| BstX2I | RGATCY | 1 cut(s) | 638 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1487 |
| BstYI | RGATCY | 1 cut(s) | 638 |
| BsuI | GTATCC | 1 cut(s) | 1493 |
| BsuRI | GGCC | 7 cut(s) | 97, 290, 563, 1143, 1342, 1455, 1479 |
| BtgI | CCRYGG | 1 cut(s) | 1255 |
| BtgZI | GCGATG | 1 cut(s) | 990 |
| BtsCI | GGATG | 5 cut(s) | 331, 535, 780, 781, 1162 |
| BtsIMutI | CAGTG | 2 cut(s) | 358, 1521 |
| Cac8I | GCNNGC | 2 cut(s) | 528, 1071 |
| CciI | TCATGA | 1 cut(s) | 760 |
| Cfr13I | GGNCC | 6 cut(s) | 95, 96, 562, 1141, 1340, 1454 |
| Csp6I | GTAC | 1 cut(s) | 174 |
| CviAII | CATG | 4 cut(s) | 199, 761, 953, 1225 |
| CviQI | GTAC | 1 cut(s) | 174 |
| DdeI | CTNAG | 6 cut(s) | 44, 60, 670, 872, 1029, 1439 |
| DpnI | GATC | 4 cut(s) | 640, 885, 1185, 1253 |
| DpnII | GATC | 4 cut(s) | 638, 883, 1183, 1251 |
| DriI | GACNNNNNGTC | 2 cut(s) | 116, 807 |
| Eam1104I | CTCTTC | 2 cut(s) | 333, 1419 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 116, 807 |
| EarI | CTCTTC | 2 cut(s) | 333, 1419 |
| Eco130I | CCWWGG | 4 cut(s) | 84, 291, 422, 1144 |
| Eco24I | GRGCYC | 1 cut(s) | 99 |
| Eco31I | GGTCTC | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 4 cut(s) | 150, 611, 1200, 1418 |
| Eco88I | CYCGRG | 2 cut(s) | 98, 1457 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1340 |
| EcoRI | GAATTC | 1 cut(s) | 1123 |
| EcoRII | CCWGG | 3 cut(s) | 142, 542, 577 |
| EcoT14I | CCWWGG | 4 cut(s) | 84, 291, 422, 1144 |
| EcoT22I | ATGCAT | 1 cut(s) | 1164 |
| EcoT38I | GRGCYC | 1 cut(s) | 99 |
| ErhI | CCWWGG | 4 cut(s) | 84, 291, 422, 1144 |
| Esp3I | CGTCTC | 1 cut(s) | 794 |
| FaeI | CATG | 4 cut(s) | 202, 764, 956, 1228 |
| FaqI | GGGAC | 2 cut(s) | 941, 963 |
| FatI | CATG | 4 cut(s) | 198, 760, 952, 1224 |
| FblI | GTMKAC | 1 cut(s) | 829 |
| Fnu4HI | GCNGC | 5 cut(s) | 11, 388, 751, 754, 894 |
| FokI | GGATG | 5 cut(s) | 338, 522, 767, 788, 1149 |
| FriOI | GRGCYC | 1 cut(s) | 99 |
| Fsp4HI | GCNGC | 5 cut(s) | 11, 388, 751, 754, 894 |
| FspBI | CTAG | 8 cut(s) | 402, 632, 741, 747, 1077, 1418, 1431, 1475 |
| GluI | GCNGC | 5 cut(s) | 11, 388, 751, 754, 894 |
| HaeIII | GGCC | 7 cut(s) | 97, 290, 563, 1143, 1342, 1455, 1479 |
| HapII | CCGG | 2 cut(s) | 960, 1166 |
| Hin1II | CATG | 4 cut(s) | 202, 764, 956, 1228 |
| HindIII | AAGCTT | 2 cut(s) | 623, 1190 |
| HinfI | GANTC | 6 cut(s) | 20, 117, 617, 901, 1237, 1265 |
| HpaII | CCGG | 2 cut(s) | 960, 1166 |
| HphI | GGTGA | 3 cut(s) | 805, 1013, 1400 |
| Hpy166II | GTNNAC | 2 cut(s) | 152, 830 |
| Hpy188III | TCNNGA | 8 cut(s) | 27, 131, 248, 332, 761, 907, 1166, 1438 |
| Hpy8I | GTNNAC | 2 cut(s) | 152, 830 |
| HpyCH4III | ACNGT | 5 cut(s) | 156, 205, 353, 793, 1406 |
| HpyCH4IV | ACGT | 2 cut(s) | 418, 803 |
| HpyF3I | CTNAG | 6 cut(s) | 44, 60, 670, 872, 1029, 1439 |
| HpySE526I | ACGT | 2 cut(s) | 418, 803 |
| Hsp92II | CATG | 4 cut(s) | 202, 764, 956, 1228 |
| Kpn2I | TCCGGA | 1 cut(s) | 1165 |
| Kzo9I | GATC | 4 cut(s) | 638, 883, 1183, 1251 |
| LguI | GCTCTTC | 2 cut(s) | 333, 1419 |
| LmnI | GCTCC | 1 cut(s) | 1440 |
| Lsp1109I | GCAGC | 4 cut(s) | 22, 740, 762, 880 |
| LweI | GCATC | 7 cut(s) | 539, 637, 766, 1056, 1097, 1149, 1171 |
| MaeI | CTAG | 8 cut(s) | 402, 632, 741, 747, 1077, 1418, 1431, 1475 |
| MaeII | ACGT | 2 cut(s) | 418, 803 |
| MaeIII | GTNAC | 3 cut(s) | 131, 793, 1517 |
| MalI | GATC | 4 cut(s) | 640, 885, 1185, 1253 |
| MboI | GATC | 4 cut(s) | 638, 883, 1183, 1251 |
| MfeI | CAATTG | 1 cut(s) | 33 |
| MflI | RGATCY | 1 cut(s) | 638 |
| MhlI | GDGCHC | 1 cut(s) | 99 |
| MluCI | AATT | 9 cut(s) | 33, 356, 448, 497, 510, 980, 1117, 1123, 1382 |
| MlyI | GAGTC | 2 cut(s) | 126, 1231 |
| MmeI | TCCRAC | 2 cut(s) | 1307, 1477 |
| Mph1103I | ATGCAT | 1 cut(s) | 1164 |
| MroI | TCCGGA | 1 cut(s) | 1165 |
| MroXI | GAANNNNTTC | 3 cut(s) | 243, 342, 510 |
| MseI | TTAA | 2 cut(s) | 888, 1002 |
| MslI | CAYNNNNRTG | 4 cut(s) | 191, 203, 262, 351 |
| MspA1I | CMGCKG | 2 cut(s) | 13, 753 |
| MspCI | CTTAAG | 1 cut(s) | 887 |
| MspI | CCGG | 2 cut(s) | 960, 1166 |
| MspR9I | CCNGG | 4 cut(s) | 144, 544, 579, 960 |
| MunI | CAATTG | 1 cut(s) | 33 |
| MvaI | CCWGG | 3 cut(s) | 144, 544, 579 |
| NciI | CCSGG | 1 cut(s) | 960 |
| NdeII | GATC | 4 cut(s) | 638, 883, 1183, 1251 |
| NlaIII | CATG | 4 cut(s) | 202, 764, 956, 1228 |
| NlaIV | GGNNCC | 5 cut(s) | 97, 1176, 1341, 1436, 1456 |
| NmuCI | GTSAC | 3 cut(s) | 131, 793, 1517 |
| NsiI | ATGCAT | 1 cut(s) | 1164 |
| NspI | RCATGY | 2 cut(s) | 956, 1228 |
| OliI | CACNNNNGTG | 1 cut(s) | 351 |
| PagI | TCATGA | 1 cut(s) | 760 |
| PciI | ACATGT | 1 cut(s) | 952 |
| PciSI | GCTCTTC | 2 cut(s) | 333, 1419 |
| PdmI | GAANNNNTTC | 3 cut(s) | 243, 342, 510 |
| PfeI | GAWTC | 4 cut(s) | 20, 617, 901, 1265 |
| PkrI | GCNGC | 5 cut(s) | 12, 389, 752, 755, 895 |
| PleI | GAGTC | 2 cut(s) | 125, 1231 |
| PpsI | GAGTC | 2 cut(s) | 125, 1231 |
| PscI | ACATGT | 1 cut(s) | 952 |
| Psp6I | CCWGG | 3 cut(s) | 142, 542, 577 |
| PspGI | CCWGG | 3 cut(s) | 142, 542, 577 |
| PspN4I | GGNNCC | 5 cut(s) | 97, 1176, 1341, 1436, 1456 |
| PspOMI | GGGCCC | 1 cut(s) | 95 |
| PspPI | GGNCC | 6 cut(s) | 95, 96, 562, 1141, 1340, 1454 |
| PsuI | RGATCY | 1 cut(s) | 638 |
| PvuII | CAGCTG | 1 cut(s) | 753 |
| RsaI | GTAC | 1 cut(s) | 175 |
| RsaNI | GTAC | 1 cut(s) | 174 |
| RseI | CAYNNNNRTG | 4 cut(s) | 191, 203, 262, 351 |
| SapI | GCTCTTC | 2 cut(s) | 333, 1419 |
| SaqAI | TTAA | 2 cut(s) | 888, 1002 |
| SatI | GCNGC | 5 cut(s) | 11, 388, 751, 754, 894 |
| Sau3AI | GATC | 4 cut(s) | 638, 883, 1183, 1251 |
| Sau96I | GGNCC | 6 cut(s) | 95, 96, 562, 1141, 1340, 1454 |
| SchI | GAGTC | 2 cut(s) | 126, 1231 |
| ScrFI | CCNGG | 4 cut(s) | 144, 544, 579, 960 |
| SduI | GDGCHC | 1 cut(s) | 99 |
| SfaNI | GCATC | 7 cut(s) | 539, 637, 766, 1056, 1097, 1149, 1171 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 191, 203, 262, 351 |
| SmlI | CTYRAG | 3 cut(s) | 375, 887, 905 |
| SmoI | CTYRAG | 3 cut(s) | 375, 887, 905 |
| SpeI | ACTAGT | 1 cut(s) | 1076 |
| Sse9I | AATT | 9 cut(s) | 33, 356, 448, 497, 510, 980, 1117, 1123, 1382 |
| SsiI | CCGC | 3 cut(s) | 13, 41, 387 |
| SspI | AATATT | 4 cut(s) | 234, 700, 1006, 1289 |
| SspMI | CTAG | 8 cut(s) | 402, 632, 741, 747, 1077, 1418, 1431, 1475 |
| StyD4I | CCNGG | 4 cut(s) | 142, 542, 577, 958 |
| StyI | CCWWGG | 4 cut(s) | 84, 291, 422, 1144 |
| TaaI | ACNGT | 5 cut(s) | 156, 205, 353, 793, 1406 |
| TaiI | ACGT | 2 cut(s) | 421, 806 |
| TaqI | TCGA | 4 cut(s) | 26, 226, 285, 882 |
| TasI | AATT | 9 cut(s) | 33, 356, 448, 497, 510, 980, 1117, 1123, 1382 |
| TauI | GCSGC | 1 cut(s) | 390 |
| TfiI | GAWTC | 4 cut(s) | 20, 617, 901, 1265 |
| Tru1I | TTAA | 2 cut(s) | 888, 1002 |
| Tru9I | TTAA | 2 cut(s) | 888, 1002 |
| TscAI | CASTG | 2 cut(s) | 358, 1528 |
| TseFI | GTSAC | 3 cut(s) | 131, 793, 1517 |
| TseI | GCWGC | 4 cut(s) | 10, 750, 753, 893 |
| Tsp45I | GTSAC | 3 cut(s) | 131, 793, 1517 |
| TspDTI | ATGAA | 7 cut(s) | 318, 351, 519, 692, 749, 974, 993 |
| TspGWI | ACGGA | 4 cut(s) | 616, 788, 1244, 1317 |
| TspRI | CASTG | 2 cut(s) | 358, 1528 |
| Vha464I | CTTAAG | 1 cut(s) | 887 |
| XapI | RAATTY | 2 cut(s) | 980, 1123 |
| XceI | RCATGY | 2 cut(s) | 956, 1228 |
| XmiI | GTMKAC | 1 cut(s) | 829 |
| XmnI | GAANNNNTTC | 3 cut(s) | 243, 342, 510 |
| XspI | CTAG | 8 cut(s) | 402, 632, 741, 747, 1077, 1418, 1431, 1475 |
| Zsp2I | ATGCAT | 1 cut(s) | 1164 |