Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Reverse (-)

22773933 .. 22774850

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGAGACAAACCATCATCATCAAACACTGCCAAGACTAATGTGAAAGAACCAGGAGTGAATCTTCAAAATGAAGAGTTTTTGAAAGAATGTGGTCACAGCATTGAGATGCGAAAGAAGGTGTCAGGTGCATTGCGCCTGTTTAGTGTTGTTTTTGAAAGTCTAGAAGATGAAAAGTCAGAGGAAGGATCTGCTTCTAAAAGGGTTGATCTTAAAGCTGCAAATATTCTCAAGAAGGAAGGAAGGTTTGTAAACACAGGCAAGCAAATTATTGGGCCTGTCCCAGGTGTTGAGGTTGGTGATGAATATAAATACAGAGTTGAACTCACAATTATTGGCTTACATCGCCAGACTCGAGCAGGTATAGACTTTGTGATGCATGGTGGTAGGATTCTTGCCACCAGCATCGTTGCCTCAGGGAGCTATGAAGATAAGATTTGCAATGAAATGTCTATAATATATACAGGCCAAGGAGGAAATTACATGCTTCCAAGGAAGAAAGCTTATGATCAGAAGCTTAAAGGGGGAAACCTTGCTTTGAAGAACAGTTTGGATGAACAAAATCCGATCAGACTCATTCATAGGCTTTACTCTTCTGATGGTCAAAGGAAATACGTGTACAAAGGGCTGTTTGTAGTAACAAAATGTTTCCGGAAAAGAGGAACTCGGGGAAAGCTGGTTTGGGAATTTCATTTGCGCCTCCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

236

Amino Acids

26.51

Weight (kDa)

9.61

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	91 - 233	1.9e-42	SAD/SRA domain
SRA_ScoMcrA	PF26348	131 - 221	7e-06	ScoMcrA-like, SRA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	350
AccIII	TCCGGA	1 cut(s)	651
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	686
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	5 cut(s)	68, 85, 158, 323, 541
AjnI	CCWGG	2 cut(s)	52, 283
AjuI	GAANNNNNNNTTGG	4 cut(s)	533, 565, 664, 696
AluBI	AGCT	5 cut(s)	218, 423, 503, 517, 676
AluI	AGCT	5 cut(s)	218, 423, 503, 517, 676
AlwI	GGATC	1 cut(s)	196
Ama87I	CYCGRG	2 cut(s)	354, 666
Aor13HI	TCCGGA	1 cut(s)	651
AoxI	GGCC	2 cut(s)	275, 466
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	686
AspLEI	GCGC	2 cut(s)	138, 699
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	2 cut(s)	354, 666
AxyI	CCTNAGG	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	2 cut(s)	22, 593
BciT130I	CCWGG	2 cut(s)	54, 285
BclI	TGATCA	1 cut(s)	508
BfaI	CTAG	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	54, 285
BmeT110I	CYCGRG	2 cut(s)	354, 666
BmgT120I	GGNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	54, 285
BmsI	GCATC	3 cut(s)	99, 366, 414
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BpuEI	CTTGAG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	616
BsaJI	CCNNGG	3 cut(s)	283, 469, 491
BsaWI	WCCGGW	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse21I	CCTNAGG	1 cut(s)	415
Bse3DI	GCAATG	2 cut(s)	131, 448
BseAI	TCCGGA	1 cut(s)	651
BseBI	CCWGG	2 cut(s)	54, 285
BseDI	CCNNGG	3 cut(s)	283, 469, 491
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	2 cut(s)	131, 448
BseMII	CTCAG	1 cut(s)	429
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	2 cut(s)	277, 468
BsiHKCI	CYCGRG	2 cut(s)	354, 666
BsiSI	CCGG	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	2 cut(s)	277, 468
BsoBI	CYCGRG	2 cut(s)	354, 666
Bsp13I	TCCGGA	1 cut(s)	651
Bsp1407I	TGTACA	1 cut(s)	618
Bsp143I	GATC	4 cut(s)	188, 208, 508, 567
BspANI	GGCC	2 cut(s)	277, 468
BspCNI	CTCAG	1 cut(s)	428
BspEI	TCCGGA	1 cut(s)	651
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	1 cut(s)	196
BsrDI	GCAATG	2 cut(s)	131, 448
BsrGI	TGTACA	1 cut(s)	618
BssECI	CCNNGG	3 cut(s)	283, 469, 491
BssMI	GATC	4 cut(s)	188, 208, 508, 567
BssT1I	CCWWGG	2 cut(s)	469, 491
Bst2UI	CCWGG	2 cut(s)	54, 285
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	2 cut(s)	69, 598
BstAUI	TGTACA	1 cut(s)	618
BstBAI	YACGTR	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	415
BstENI	CCTNNNNNAGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	559
BstHHI	GCGC	2 cut(s)	138, 699
BstKTI	GATC	4 cut(s)	191, 211, 511, 570
BstMBI	GATC	4 cut(s)	188, 208, 508, 567
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	2 cut(s)	54, 285
BstNSI	RCATGY	1 cut(s)	487
BstSCI	CCNGG	2 cut(s)	52, 283
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
Bsu36I	CCTNAGG	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	277, 468
BtgZI	GCGATG	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	2 cut(s)	138, 699
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	2 cut(s)	380, 484
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	1 cut(s)	415
DpnI	GATC	4 cut(s)	190, 210, 510, 569
DpnII	GATC	4 cut(s)	188, 208, 508, 567
Eam1104I	CTCTTC	2 cut(s)	69, 598
EarI	CTCTTC	2 cut(s)	69, 598
Eco130I	CCWWGG	2 cut(s)	469, 491
Eco81I	CCTNAGG	1 cut(s)	415
Eco88I	CYCGRG	2 cut(s)	354, 666
EcoNI	CCTNNNNNAGG	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	52, 283
EcoT14I	CCWWGG	2 cut(s)	469, 491
EcoT22I	ATGCAT	1 cut(s)	381
ErhI	CCWWGG	2 cut(s)	469, 491
FaeI	CATG	2 cut(s)	383, 487
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	2 cut(s)	379, 483
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	164
GlaI	GCGC	2 cut(s)	137, 698
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	277, 468
HapII	CCGG	1 cut(s)	652
HhaI	GCGC	2 cut(s)	138, 699
Hin1II	CATG	2 cut(s)	383, 487
Hin6I	GCGC	2 cut(s)	136, 697
HinP1I	GCGC	2 cut(s)	136, 697
HindIII	AAGCTT	2 cut(s)	501, 515
HinfI	GANTC	4 cut(s)	61, 352, 391, 573
HpaII	CCGG	1 cut(s)	652
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	253, 619
Hpy188I	TCNGA	5 cut(s)	181, 513, 567, 572, 598
Hpy188III	TCNNGA	3 cut(s)	164, 232, 652
Hpy8I	GTNNAC	2 cut(s)	253, 619
HpyAV	CCTTC	5 cut(s)	112, 179, 229, 233, 237
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	4 cut(s)	131, 221, 379, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	1 cut(s)	415
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	2 cut(s)	383, 487
HspAI	GCGC	2 cut(s)	136, 697
Kpn2I	TCCGGA	1 cut(s)	651
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	4 cut(s)	188, 208, 508, 567
LmnI	GCTCC	1 cut(s)	420
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	3 cut(s)	99, 366, 414
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	2 cut(s)	95, 637
MalI	GATC	4 cut(s)	190, 210, 510, 569
MboI	GATC	4 cut(s)	188, 208, 508, 567
MboII	GAAGA	7 cut(s)	56, 86, 179, 440, 508, 553, 585
MflI	RGATCY	1 cut(s)	188
MluCI	AATT	4 cut(s)	267, 330, 478, 686
MlyI	GAGTC	2 cut(s)	346, 567
MnlI	CCTC	6 cut(s)	175, 286, 424, 467, 653, 710
Mph1103I	ATGCAT	1 cut(s)	381
MroI	TCCGGA	1 cut(s)	651
MseI	TTAA	2 cut(s)	213, 519
MslI	CAYNNNNRTG	1 cut(s)	107
MspI	CCGG	1 cut(s)	652
MspR9I	CCNGG	2 cut(s)	54, 285
MvaI	CCWGG	2 cut(s)	54, 285
MwoI	GCNNNNNNNGC	1 cut(s)	345
NdeII	GATC	4 cut(s)	188, 208, 508, 567
NlaIII	CATG	2 cut(s)	383, 487
NmuCI	GTSAC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	381
NspI	RCATGY	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	61, 391
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	2 cut(s)	346, 567
PpsI	GAGTC	2 cut(s)	346, 567
Ppu21I	YACGTR	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	52, 283
PspGI	CCWGG	2 cut(s)	52, 283
PspPI	GGNCC	1 cut(s)	275
PspXI	VCTCGAGB	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	188
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	213, 519
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	4 cut(s)	188, 208, 508, 567
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	346, 567
ScrFI	CCNGG	2 cut(s)	54, 285
SfaNI	GCATC	3 cut(s)	99, 366, 414
Sfr274I	CTCGAG	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	230, 354
SmoI	CTYRAG	2 cut(s)	230, 354
Sse9I	AATT	4 cut(s)	267, 330, 478, 686
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	52, 283
StyI	CCWWGG	2 cut(s)	469, 491
TaaI	ACNGT	1 cut(s)	548
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	1 cut(s)	355
TasI	AATT	4 cut(s)	267, 330, 478, 686
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	2 cut(s)	61, 391
Tru1I	TTAA	2 cut(s)	213, 519
Tru9I	TTAA	2 cut(s)	213, 519
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	8 cut(s)	87, 186, 318, 441, 459, 569, 570, 680
TspRI	CASTG	1 cut(s)	34
XagI	CCTNNNNNAGG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	686
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	354
XspI	CTAG	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.