Rh7BG223800

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000355
Physical Location & Seq
Forward (+)
19307998 .. 19309135
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG223800.1

Sequence Viewer

Length: 879 bp
ATGTTGCTCATGGAAAATAGTGAGTGTTTTTCCCATACCAAGTCGCCAGAGTATAAGAGGTGTAGAGTCTCTGCTGTTCGTGATTATCCTTTAGGGTGTGGACCATTTGCTCACTTGAGTAATTTGAATGCCAATGCTACGGAGAGAATTTCAGATAAGAAATATCTTCCTCAATCAGTAGAAGCTGTTCGGGATTTTCCTCCTTTCTGCGGGATAAATGCTTCTCCTGAGGCCAGGAAATTCGGCCAAGAGAAGTCAGTTAGGGATTACAAGTCATCATCATCAAAGACAGTGAAGACTAATGTAAAACAAACAGGACTTGGGAACAAATTTCAACCTAACACTGAGAAGAAAATTGGAGGAAAGTCTCTAAAGAAGAATCATCATGTACCAGTAAGGGCTGCTTGTCAAGGTACAATTCAACTTGATATAAGGAAGAAGAAGTATTATCAGCATGATGAAAAAGAACACAATCATGTGATTCCAAAATCATGGAGTACAGATGGGTGCCCTCCTCCTTTTGGTTGTAGTAGTTCAAGCCGCAGAAGTCATGATAATGACACAACTGAGAGAAACAAGGTAAAGGAGATATTGCATATGTTCCAAGATGAATGTGAAAAGCTCTTGCTGGAGGAAGAACATAAAAGATCAAAGGGAGGAGGAACTTCTCTCCGAAGGGTTGATTTGGAAGCCTTTAAGATCCTCAAGGATAGAGGAATCTTTGTAAAATCAGGCAAACATGTCATAGGAGATATCCCAGGAGTTGAAGTTGGTGATAAGTTTCAATACCGAGTGGAACTTATCCTTATTGGCCTACATCACCAGATTCAAGGTGGTATAGCTTATGGGAACTTCGGTGGTAAGCTCACAGGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

292

Amino Acids

32.78

Weight (kDa)

9.41

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 249 - 283 2.5e-08 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 507
AciI CCGC 2 cut(s) 210, 541
AclWI GGATC 1 cut(s) 694
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 3 cut(s) 147, 239, 329
AfaI GTAC 3 cut(s) 390, 415, 499
AfiI CCNNNNNNNGG 2 cut(s) 209, 521
AflIII ACRYGT 1 cut(s) 739
AgsI TTSAA 7 cut(s) 127, 335, 422, 537, 767, 785, 830
AjnI CCWGG 2 cut(s) 233, 757
AluBI AGCT 4 cut(s) 185, 622, 842, 865
AluI AGCT 4 cut(s) 185, 622, 842, 865
Alw26I GTCTC 2 cut(s) 73, 372
AlwI GGATC 1 cut(s) 694
AoxI GGCC 3 cut(s) 231, 244, 811
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 3 cut(s) 147, 239, 329
Asp700I GAANNNNTTC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 785, 812
AvaII GGWCC 1 cut(s) 101
AxyI CCTNAGG 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 512
BanI GGYRCC 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 497
BciT130I CCWGG 2 cut(s) 235, 759
BcoDI GTCTC 2 cut(s) 73, 372
BisI GCNGC 2 cut(s) 402, 541
BlsI GCNGC 2 cut(s) 403, 542
Bme1390I CCNGG 2 cut(s) 235, 759
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 509
BmrFI CCNGG 2 cut(s) 235, 759
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 1 cut(s) 650
BpuEI CTTGAG 2 cut(s) 136, 689
BsaJI CCNNGG 1 cut(s) 757
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 521
Bse1I ACTGG 1 cut(s) 392
Bse21I CCTNAGG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 235, 759
BseDI CCNNGG 1 cut(s) 757
BseLI CCNNNNNNNGG 2 cut(s) 209, 521
BseMII CTCAG 3 cut(s) 219, 336, 558
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 2 cut(s) 504, 672
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 1 cut(s) 388
BshFI GGCC 3 cut(s) 233, 246, 813
BshNI GGYRCC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 209, 521
BsmAI GTCTC 2 cut(s) 73, 372
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 3 cut(s) 233, 246, 813
Bsp1286I GDGCHC 1 cut(s) 512
Bsp143I GATC 3 cut(s) 647, 699, 872
BspACI CCGC 2 cut(s) 210, 541
BspANI GGCC 3 cut(s) 233, 246, 813
BspCNI CTCAG 3 cut(s) 220, 337, 559
BspHI TCATGA 2 cut(s) 550, 875
BspLI GGNNCC 1 cut(s) 509
BspPI GGATC 1 cut(s) 694
BspT107I GGYRCC 1 cut(s) 507
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 757
BssMI GATC 3 cut(s) 647, 699, 872
Bst2UI CCWGG 2 cut(s) 235, 759
Bst4CI ACNGT 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 228, 345, 567
BstKTI GATC 3 cut(s) 650, 702, 875
BstMAI GTCTC 2 cut(s) 73, 372
BstMBI GATC 3 cut(s) 647, 699, 872
BstNI CCWGG 2 cut(s) 235, 759
BstNSI RCATGY 1 cut(s) 743
BstSCI CCNGG 2 cut(s) 233, 757
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 699
BstXI CCANNNNNNTGG 1 cut(s) 492
BstYI RGATCY 1 cut(s) 699
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 3 cut(s) 233, 246, 813
BtsIMutI CAGTG 2 cut(s) 297, 342
CciI TCATGA 2 cut(s) 550, 875
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 389, 414, 498
CviAII CATG 8 cut(s) 10, 386, 455, 476, 492, 551, 740, 876
CviQI GTAC 3 cut(s) 389, 414, 498
DdeI CTNAG 3 cut(s) 228, 345, 567
DpnI GATC 3 cut(s) 649, 701, 874
DpnII GATC 3 cut(s) 647, 699, 872
EaeI YGGCCR 1 cut(s) 244
Eco32I GATATC 1 cut(s) 754
Eco47I GGWCC 1 cut(s) 101
Eco81I CCTNAGG 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 233, 757
EcoRV GATATC 1 cut(s) 754
FaeI CATG 8 cut(s) 13, 389, 458, 479, 495, 554, 743, 879
FalI AAGNNNNNCTT 2 cut(s) 388, 420
FatI CATG 8 cut(s) 9, 385, 454, 475, 491, 550, 739, 875
FauI CCCGC 1 cut(s) 203
FauNDI CATATG 1 cut(s) 597
Fnu4HI GCNGC 2 cut(s) 402, 541
Fsp4HI GCNGC 2 cut(s) 402, 541
GluI GCNGC 2 cut(s) 402, 541
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 3 cut(s) 233, 246, 813
Hin1II CATG 8 cut(s) 13, 389, 458, 479, 495, 554, 743, 879
HinfI GANTC 5 cut(s) 66, 379, 481, 717, 826
HphI GGTGA 2 cut(s) 785, 812
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 2 cut(s) 154, 674
Hpy188III TCNNGA 5 cut(s) 80, 191, 227, 551, 876
Hpy8I GTNNAC 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 669
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 595
HpyF3I CTNAG 3 cut(s) 228, 345, 567
Hsp92II CATG 8 cut(s) 13, 389, 458, 479, 495, 554, 743, 879
Kzo9I GATC 3 cut(s) 647, 699, 872
Lsp1109I GCAGC 1 cut(s) 388
MalI GATC 3 cut(s) 649, 701, 874
MboI GATC 3 cut(s) 647, 699, 872
MboII GAAGA 7 cut(s) 158, 307, 361, 388, 448, 451, 647
MflI RGATCY 1 cut(s) 699
MhlI GDGCHC 1 cut(s) 512
MluCI AATT 6 cut(s) 121, 147, 239, 329, 354, 417
MlyI GAGTC 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 696
MslI CAYNNNNRTG 2 cut(s) 474, 555
MspR9I CCNGG 2 cut(s) 235, 759
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 2 cut(s) 235, 759
NdeI CATATG 1 cut(s) 597
NdeII GATC 3 cut(s) 647, 699, 872
NlaIII CATG 8 cut(s) 13, 389, 458, 479, 495, 554, 743, 879
NlaIV GGNNCC 1 cut(s) 509
NspI RCATGY 1 cut(s) 743
PagI TCATGA 2 cut(s) 550, 875
PciI ACATGT 1 cut(s) 739
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 4 cut(s) 379, 481, 717, 826
PkrI GCNGC 2 cut(s) 403, 542
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PscI ACATGT 1 cut(s) 739
Psp6I CCWGG 2 cut(s) 233, 757
PspGI CCWGG 2 cut(s) 233, 757
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 1 cut(s) 101
PsrI GAACNNNNNNTAC 2 cut(s) 171, 203
PsuI RGATCY 1 cut(s) 699
RsaI GTAC 3 cut(s) 390, 415, 499
RsaNI GTAC 3 cut(s) 389, 414, 498
RseI CAYNNNNRTG 2 cut(s) 474, 555
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 2 cut(s) 402, 541
Sau3AI GATC 3 cut(s) 647, 699, 872
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 2 cut(s) 235, 759
SduI GDGCHC 1 cut(s) 512
SetI ASST 9 cut(s) 62, 187, 340, 415, 582, 624, 835, 844, 867
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 2 cut(s) 474, 555
SmlI CTYRAG 2 cut(s) 115, 704
SmoI CTYRAG 2 cut(s) 115, 704
Sse9I AATT 6 cut(s) 121, 147, 239, 329, 354, 417
SsiI CCGC 2 cut(s) 210, 541
StyD4I CCNGG 2 cut(s) 233, 757
TaaI ACNGT 1 cut(s) 292
TasI AATT 6 cut(s) 121, 147, 239, 329, 354, 417
TatI WGTACW 1 cut(s) 497
TauI GCSGC 1 cut(s) 543
TfiI GAWTC 4 cut(s) 379, 481, 717, 826
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 2 cut(s) 297, 349
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 474, 624
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 2 cut(s) 297, 349
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 3 cut(s) 147, 239, 329
XceI RCATGY 1 cut(s) 743
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmnI GAANNNNTTC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.