histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 889 |
| AccB1I | GGYRCC | 1 cut(s) | 297 |
| AciI | CCGC | 5 cut(s) | 301, 367, 545, 704, 813 |
| AclWI | GGATC | 1 cut(s) | 468 |
| AcoI | YGGCCR | 1 cut(s) | 872 |
| AcsI | RAATTY | 6 cut(s) | 158, 425, 438, 481, 652, 789 |
| AcuI | CTGAAG | 1 cut(s) | 477 |
| AfaI | GTAC | 1 cut(s) | 698 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 317 |
| AflIII | ACRYGT | 1 cut(s) | 801 |
| AgsI | TTSAA | 5 cut(s) | 91, 98, 437, 445, 627 |
| AjnI | CCWGG | 2 cut(s) | 415, 528 |
| AluBI | AGCT | 5 cut(s) | 82, 127, 327, 433, 526 |
| AluI | AGCT | 5 cut(s) | 82, 127, 327, 433, 526 |
| Alw21I | GWGCWC | 1 cut(s) | 528 |
| AlwI | GGATC | 1 cut(s) | 468 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 349, 574 |
| Ama87I | CYCGRG | 1 cut(s) | 314 |
| AoxI | GGCC | 1 cut(s) | 872 |
| ApoI | RAATTY | 6 cut(s) | 158, 425, 438, 481, 652, 789 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 213 |
| AspLEI | GCGC | 2 cut(s) | 185, 227 |
| AsuC2I | CCSGG | 1 cut(s) | 876 |
| AsuHPI | GGTGA | 2 cut(s) | 676, 788 |
| AvaI | CYCGRG | 1 cut(s) | 314 |
| BanI | GGYRCC | 1 cut(s) | 297 |
| BanII | GRGCYC | 2 cut(s) | 71, 528 |
| Bbv12I | GWGCWC | 1 cut(s) | 528 |
| BccI | CCATC | 3 cut(s) | 23, 611, 668 |
| BciT130I | CCWGG | 2 cut(s) | 417, 530 |
| BclI | TGATCA | 2 cut(s) | 565, 772 |
| BcnI | CCSGG | 1 cut(s) | 876 |
| BfaI | CTAG | 2 cut(s) | 101, 276 |
| BglII | AGATCT | 1 cut(s) | 175 |
| BisI | GCNGC | 3 cut(s) | 301, 705, 813 |
| BlsI | GCNGC | 3 cut(s) | 302, 706, 814 |
| Bme1390I | CCNGG | 3 cut(s) | 417, 530, 876 |
| BmeT110I | CYCGRG | 1 cut(s) | 314 |
| BmiI | GGNNCC | 1 cut(s) | 299 |
| BmrFI | CCNGG | 3 cut(s) | 417, 530, 876 |
| BmrI | ACTGGG | 1 cut(s) | 567 |
| BmuI | ACTGGG | 1 cut(s) | 567 |
| BpuEI | CTTGAG | 1 cut(s) | 57 |
| BpuMI | CCSGG | 1 cut(s) | 876 |
| BsaBI | GATNNNNATC | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 1 cut(s) | 315 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 317 |
| Bse118I | RCCGGY | 1 cut(s) | 870 |
| Bse1I | ACTGG | 1 cut(s) | 562 |
| Bse8I | GATNNNNATC | 1 cut(s) | 570 |
| BseBI | CCWGG | 2 cut(s) | 417, 530 |
| BseDI | CCNNGG | 1 cut(s) | 315 |
| BseGI | GGATG | 3 cut(s) | 622, 679, 826 |
| BseJI | GATNNNNATC | 1 cut(s) | 570 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 317 |
| BseMII | CTCAG | 3 cut(s) | 341, 356, 807 |
| BseNI | ACTGG | 1 cut(s) | 562 |
| BseX3I | CGGCCG | 1 cut(s) | 872 |
| BseYI | CCCAGC | 1 cut(s) | 462 |
| Bsh1285I | CGRYCG | 1 cut(s) | 875 |
| BshFI | GGCC | 1 cut(s) | 874 |
| BshNI | GGYRCC | 1 cut(s) | 297 |
| BsiEI | CGRYCG | 1 cut(s) | 875 |
| BsiHKAI | GWGCWC | 1 cut(s) | 528 |
| BsiHKCI | CYCGRG | 1 cut(s) | 314 |
| BsiSI | CCGG | 2 cut(s) | 871, 875 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 317 |
| BsmI | GAATGC | 1 cut(s) | 343 |
| BsnI | GGCC | 1 cut(s) | 874 |
| BsoBI | CYCGRG | 1 cut(s) | 314 |
| Bsp1286I | GDGCHC | 2 cut(s) | 71, 528 |
| Bsp143I | GATC | 5 cut(s) | 115, 175, 473, 565, 772 |
| BspACI | CCGC | 5 cut(s) | 301, 367, 545, 704, 813 |
| BspANI | GGCC | 1 cut(s) | 874 |
| BspCNI | CTCAG | 3 cut(s) | 342, 355, 808 |
| BspLI | GGNNCC | 1 cut(s) | 299 |
| BspPI | GGATC | 1 cut(s) | 468 |
| BspT107I | GGYRCC | 1 cut(s) | 297 |
| BsrFI | RCCGGY | 1 cut(s) | 870 |
| BsrI | ACTGG | 1 cut(s) | 562 |
| BssAI | RCCGGY | 1 cut(s) | 870 |
| BssECI | CCNNGG | 1 cut(s) | 315 |
| BssMI | GATC | 5 cut(s) | 115, 175, 473, 565, 772 |
| Bst2UI | CCWGG | 2 cut(s) | 417, 530 |
| Bst4CI | ACNGT | 3 cut(s) | 648, 688, 701 |
| Bst6I | CTCTTC | 1 cut(s) | 528 |
| BstC8I | GCNNGC | 1 cut(s) | 129 |
| BstDEI | CTNAG | 3 cut(s) | 342, 350, 816 |
| BstF5I | GGATG | 3 cut(s) | 622, 679, 826 |
| BstHHI | GCGC | 2 cut(s) | 185, 227 |
| BstKTI | GATC | 5 cut(s) | 118, 178, 476, 568, 775 |
| BstMBI | GATC | 5 cut(s) | 115, 175, 473, 565, 772 |
| BstMCI | CGRYCG | 1 cut(s) | 875 |
| BstNI | CCWGG | 2 cut(s) | 417, 530 |
| BstNSI | RCATGY | 1 cut(s) | 805 |
| BstSCI | CCNGG | 3 cut(s) | 415, 528, 874 |
| BstX2I | RGATCY | 2 cut(s) | 175, 473 |
| BstYI | RGATCY | 2 cut(s) | 175, 473 |
| BstZI | CGGCCG | 1 cut(s) | 872 |
| BsuRI | GGCC | 1 cut(s) | 874 |
| BtsCI | GGATG | 3 cut(s) | 622, 679, 826 |
| BtsIMutI | CAGTG | 2 cut(s) | 706, 783 |
| Cac8I | GCNNGC | 1 cut(s) | 129 |
| CaiI | CAGNNNCTG | 2 cut(s) | 349, 574 |
| CfoI | GCGC | 2 cut(s) | 185, 227 |
| Cfr10I | RCCGGY | 1 cut(s) | 870 |
| CsiI | ACCWGGT | 1 cut(s) | 415 |
| Csp6I | GTAC | 1 cut(s) | 697 |
| CviAII | CATG | 3 cut(s) | 280, 634, 802 |
| CviQI | GTAC | 1 cut(s) | 697 |
| DdeI | CTNAG | 3 cut(s) | 342, 350, 816 |
| DpnI | GATC | 5 cut(s) | 117, 177, 475, 567, 774 |
| DpnII | GATC | 5 cut(s) | 115, 175, 473, 565, 772 |
| DraI | TTTAAA | 1 cut(s) | 163 |
| EaeI | YGGCCR | 1 cut(s) | 872 |
| EagI | CGGCCG | 1 cut(s) | 872 |
| Eam1104I | CTCTTC | 1 cut(s) | 528 |
| EarI | CTCTTC | 1 cut(s) | 528 |
| Ecl136II | GAGCTC | 1 cut(s) | 526 |
| EclXI | CGGCCG | 1 cut(s) | 872 |
| Eco24I | GRGCYC | 2 cut(s) | 71, 528 |
| Eco52I | CGGCCG | 1 cut(s) | 872 |
| Eco53kI | GAGCTC | 1 cut(s) | 526 |
| Eco57I | CTGAAG | 1 cut(s) | 477 |
| Eco88I | CYCGRG | 1 cut(s) | 314 |
| EcoICRI | GAGCTC | 1 cut(s) | 526 |
| EcoRII | CCWGG | 2 cut(s) | 415, 528 |
| EcoT38I | GRGCYC | 2 cut(s) | 71, 528 |
| FaeI | CATG | 3 cut(s) | 283, 637, 805 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 66, 98 |
| FatI | CATG | 3 cut(s) | 279, 633, 801 |
| FauNDI | CATATG | 1 cut(s) | 19 |
| FbaI | TGATCA | 2 cut(s) | 565, 772 |
| Fnu4HI | GCNGC | 3 cut(s) | 301, 705, 813 |
| FokI | GGATG | 3 cut(s) | 629, 686, 813 |
| FriOI | GRGCYC | 2 cut(s) | 71, 528 |
| Fsp4HI | GCNGC | 3 cut(s) | 301, 705, 813 |
| FspBI | CTAG | 2 cut(s) | 101, 276 |
| GlaI | GCGC | 2 cut(s) | 184, 226 |
| GluI | GCNGC | 3 cut(s) | 301, 705, 813 |
| GsaI | CCCAGC | 1 cut(s) | 466 |
| HaeIII | GGCC | 1 cut(s) | 874 |
| HapII | CCGG | 2 cut(s) | 871, 875 |
| HhaI | GCGC | 2 cut(s) | 185, 227 |
| Hin1II | CATG | 3 cut(s) | 283, 637, 805 |
| Hin6I | GCGC | 2 cut(s) | 183, 225 |
| HinP1I | GCGC | 2 cut(s) | 183, 225 |
| HincII | GTYRAC | 1 cut(s) | 843 |
| HindII | GTYRAC | 1 cut(s) | 843 |
| HindIII | AAGCTT | 1 cut(s) | 80 |
| HinfI | GANTC | 6 cut(s) | 108, 209, 307, 346, 452, 681 |
| HpaII | CCGG | 2 cut(s) | 871, 875 |
| HphI | GGTGA | 2 cut(s) | 676, 788 |
| Hpy166II | GTNNAC | 1 cut(s) | 843 |
| Hpy188I | TCNGA | 2 cut(s) | 345, 351 |
| Hpy188III | TCNNGA | 4 cut(s) | 170, 314, 495, 776 |
| Hpy8I | GTNNAC | 1 cut(s) | 843 |
| HpyAV | CCTTC | 2 cut(s) | 501, 532 |
| HpyCH4III | ACNGT | 3 cut(s) | 648, 688, 701 |
| HpyCH4IV | ACGT | 1 cut(s) | 710 |
| HpyCH4V | TGCA | 3 cut(s) | 644, 694, 835 |
| HpyF3I | CTNAG | 3 cut(s) | 342, 350, 816 |
| HpySE526I | ACGT | 1 cut(s) | 710 |
| Hsp92II | CATG | 3 cut(s) | 283, 637, 805 |
| HspAI | GCGC | 2 cut(s) | 183, 225 |
| Ksp22I | TGATCA | 2 cut(s) | 565, 772 |
| Kzo9I | GATC | 5 cut(s) | 115, 175, 473, 565, 772 |
| LmnI | GCTCC | 1 cut(s) | 531 |
| MabI | ACCWGGT | 1 cut(s) | 415 |
| MaeI | CTAG | 2 cut(s) | 101, 276 |
| MaeII | ACGT | 1 cut(s) | 710 |
| MaeIII | GTNAC | 1 cut(s) | 395 |
| MalI | GATC | 5 cut(s) | 117, 177, 475, 567, 774 |
| MboI | GATC | 5 cut(s) | 115, 175, 473, 565, 772 |
| MboII | GAAGA | 5 cut(s) | 157, 185, 545, 560, 728 |
| MflI | RGATCY | 2 cut(s) | 175, 473 |
| MhlI | GDGCHC | 2 cut(s) | 71, 528 |
| MnlI | CCTC | 8 cut(s) | 264, 310, 321, 399, 450, 641, 776, 804 |
| MroXI | GAANNNNTTC | 1 cut(s) | 213 |
| MseI | TTAA | 2 cut(s) | 12, 162 |
| MslI | CAYNNNNRTG | 2 cut(s) | 295, 689 |
| MspA1I | CMGCKG | 1 cut(s) | 815 |
| MspI | CCGG | 2 cut(s) | 871, 875 |
| MspR9I | CCNGG | 3 cut(s) | 417, 530, 876 |
| Mva1269I | GAATGC | 1 cut(s) | 343 |
| MvaI | CCWGG | 2 cut(s) | 417, 530 |
| NciI | CCSGG | 1 cut(s) | 876 |
| NdeI | CATATG | 1 cut(s) | 19 |
| NdeII | GATC | 5 cut(s) | 115, 175, 473, 565, 772 |
| NlaIII | CATG | 3 cut(s) | 283, 637, 805 |
| NlaIV | GGNNCC | 1 cut(s) | 299 |
| NspI | RCATGY | 1 cut(s) | 805 |
| PciI | ACATGT | 1 cut(s) | 801 |
| PctI | GAATGC | 1 cut(s) | 343 |
| PdmI | GAANNNNTTC | 1 cut(s) | 213 |
| PfeI | GAWTC | 6 cut(s) | 108, 209, 307, 346, 452, 681 |
| PfoI | TCCNGGA | 1 cut(s) | 528 |
| PkrI | GCNGC | 3 cut(s) | 302, 706, 814 |
| PscI | ACATGT | 1 cut(s) | 801 |
| PsiI | TTATAA | 1 cut(s) | 889 |
| Psp124BI | GAGCTC | 1 cut(s) | 528 |
| Psp6I | CCWGG | 2 cut(s) | 415, 528 |
| PspFI | CCCAGC | 1 cut(s) | 462 |
| PspGI | CCWGG | 2 cut(s) | 415, 528 |
| PspN4I | GGNNCC | 1 cut(s) | 299 |
| PstNI | CAGNNNCTG | 2 cut(s) | 349, 574 |
| PsuI | RGATCY | 2 cut(s) | 175, 473 |
| RsaI | GTAC | 1 cut(s) | 698 |
| RsaNI | GTAC | 1 cut(s) | 697 |
| RseI | CAYNNNNRTG | 2 cut(s) | 295, 689 |
| SacI | GAGCTC | 1 cut(s) | 528 |
| SaqAI | TTAA | 2 cut(s) | 12, 162 |
| SatI | GCNGC | 3 cut(s) | 301, 705, 813 |
| Sau3AI | GATC | 5 cut(s) | 115, 175, 473, 565, 772 |
| ScrFI | CCNGG | 3 cut(s) | 417, 530, 876 |
| SduI | GDGCHC | 2 cut(s) | 71, 528 |
| SetI | ASST | 9 cut(s) | 79, 84, 129, 256, 329, 418, 435, 528, 713 |
| SexAI | ACCWGGT | 1 cut(s) | 415 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 295, 689 |
| SmlI | CTYRAG | 1 cut(s) | 72 |
| SmoI | CTYRAG | 1 cut(s) | 72 |
| SsiI | CCGC | 5 cut(s) | 301, 367, 545, 704, 813 |
| SspMI | CTAG | 2 cut(s) | 101, 276 |
| SstI | GAGCTC | 1 cut(s) | 528 |
| StyD4I | CCNGG | 3 cut(s) | 415, 528, 874 |
| TaaI | ACNGT | 3 cut(s) | 648, 688, 701 |
| TaiI | ACGT | 1 cut(s) | 713 |
| TaqI | TCGA | 1 cut(s) | 455 |
| TatI | WGTACW | 1 cut(s) | 696 |
| TauI | GCSGC | 3 cut(s) | 303, 707, 815 |
| TfiI | GAWTC | 6 cut(s) | 108, 209, 307, 346, 452, 681 |
| Tru1I | TTAA | 2 cut(s) | 12, 162 |
| Tru9I | TTAA | 2 cut(s) | 12, 162 |
| TscAI | CASTG | 2 cut(s) | 706, 790 |
| TspDTI | ATGAA | 1 cut(s) | 815 |
| TspGWI | ACGGA | 1 cut(s) | 395 |
| TspRI | CASTG | 2 cut(s) | 706, 790 |
| XapI | RAATTY | 6 cut(s) | 158, 425, 438, 481, 652, 789 |
| XceI | RCATGY | 1 cut(s) | 805 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 129 |
| XmnI | GAANNNNTTC | 1 cut(s) | 213 |
| XspI | CTAG | 2 cut(s) | 101, 276 |