Rorug07G0087400

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000355
Physical Location & Seq
Forward (+)
6860713 .. 6863366
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0087400.1

Sequence Viewer

Length: 564 bp
ATGATGGCGTCGGCCACTTTCAATTTCTCCAGGGTTTACTTGTACCAGCACCACTCCACAGTTCCCAGATCCAAATCTTCTGCATTAGTTTCAAATTCCAAACCTTTTCGCTGCGATTTTATCGCGGGCAATGAAAAACTGATACTAGATAATGCGACTAGTCTCAGAACCAAAGCCAAGTTAGCTCCCAATCCCCGTCGTCGGTTTTCGTGCACTTCTAATCTGGCGGAGTATGCCCAGACTACCTCTGCCGTCTATGGATTCCTCCTCCTCAGCGGTGGCTTCTTTGCCTATACTAGGACAGGAAGCAAAGGGTCACTTCTAGGAGGCGTTTCCGGGGCAGCTGTAATGGCCACTGCTTACTATCTGATGAAAACACCAGAGACAGAAGCTCTTGGTGATGCCCTTGGCTTTGGATCAGCGTTCCTTTTTGCTTCTGTATTTGGTATCCGATTAGCAGCTACTCGGAAATTTGCTCCTGCAGGCCCTCTCTTGGCTCTTTCCCTCAGTGCACTGGCTGTTTTTATAACAGCATACCTTCAAGATAGTGTCACTACTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

187

Amino Acids

19.93

Weight (kDa)

9.91

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 83 - 175 3.8e-16 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
AccII CGCG 1 cut(s) 125
AciI CCGC 3 cut(s) 125, 227, 276
AclWI GGATC 2 cut(s) 63, 424
AcoI YGGCCR 2 cut(s) 12, 351
AcsI RAATTY 2 cut(s) 94, 470
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 3 cut(s) 201, 297, 493
AgsI TTSAA 3 cut(s) 22, 93, 542
AhlI ACTAGT 1 cut(s) 158
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 4 cut(s) 185, 344, 392, 461
AluI AGCT 4 cut(s) 185, 344, 392, 461
Alw21I GWGCWC 2 cut(s) 215, 514
Alw26I GTCTC 2 cut(s) 167, 377
Alw44I GTGCAC 2 cut(s) 211, 510
AlwI GGATC 2 cut(s) 63, 424
AoxI GGCC 3 cut(s) 12, 351, 484
ApaLI GTGCAC 2 cut(s) 211, 510
ApeKI GCWGC 3 cut(s) 111, 341, 458
ApoI RAATTY 2 cut(s) 94, 470
AspS9I GGNCC 1 cut(s) 485
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 410
BaeGI GKGCMC 2 cut(s) 215, 514
BalI TGGCCA 1 cut(s) 353
Bbv12I GWGCWC 2 cut(s) 215, 514
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 3 cut(s) 98, 353, 470
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 31
BciVI GTATCC 1 cut(s) 458
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 2 cut(s) 167, 377
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 4 cut(s) 146, 159, 297, 323
BfmI CTRYAG 1 cut(s) 480
BfuI GTATCC 1 cut(s) 458
BisI GCNGC 3 cut(s) 112, 342, 459
BlsI GCNGC 3 cut(s) 113, 343, 460
Bme1390I CCNGG 2 cut(s) 31, 337
BmgT120I GGNCC 1 cut(s) 485
BmrFI CCNGG 2 cut(s) 31, 337
BmsI GCATC 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 30, 336, 406
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 297, 493
Bse1I ACTGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 73
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 3 cut(s) 30, 336, 406
BseJI GATNNNNATC 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 201, 297, 493
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 3 cut(s) 178, 286, 520
BseNI ACTGG 1 cut(s) 519
BseRI GAGGAG 2 cut(s) 257, 260
BseSI GKGCMC 2 cut(s) 215, 514
BseXI GCAGC 3 cut(s) 98, 353, 470
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 3 cut(s) 14, 353, 486
BsiHKAI GWGCWC 2 cut(s) 215, 514
BsiSI CCGG 1 cut(s) 336
BslI CCNNNNNNNGG 3 cut(s) 201, 297, 493
BsmAI GTCTC 2 cut(s) 167, 377
BsnI GGCC 3 cut(s) 14, 353, 486
Bsp1286I GDGCHC 2 cut(s) 215, 514
Bsp143I GATC 2 cut(s) 68, 416
BspACI CCGC 3 cut(s) 125, 227, 276
BspANI GGCC 3 cut(s) 14, 353, 486
BspCNI CTCAG 3 cut(s) 177, 285, 519
BspFNI CGCG 1 cut(s) 125
BspMAI CTGCAG 1 cut(s) 484
BspPI GGATC 2 cut(s) 63, 424
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 1 cut(s) 519
BssECI CCNNGG 3 cut(s) 30, 336, 406
BssMI GATC 2 cut(s) 68, 416
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 61
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 127, 484
BstDEI CTNAG 3 cut(s) 164, 272, 506
BstENI CCTNNNNNAGG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 2 cut(s) 71, 419
BstMAI GTCTC 2 cut(s) 167, 377
BstMBI GATC 2 cut(s) 68, 416
BstMWI GCNNNNNNNGC 3 cut(s) 182, 233, 350
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 29, 335
BstSFI CTRYAG 1 cut(s) 480
BstSLI GKGCMC 2 cut(s) 215, 514
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 3 cut(s) 98, 353, 470
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 3 cut(s) 14, 353, 486
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 3 cut(s) 354, 512, 514
Cac8I GCNNGC 2 cut(s) 127, 484
Cfr13I GGNCC 1 cut(s) 485
Csp6I GTAC 1 cut(s) 43
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 3 cut(s) 164, 272, 506
DpnI GATC 2 cut(s) 70, 418
DpnII GATC 2 cut(s) 68, 416
EaeI YGGCCR 2 cut(s) 12, 351
EciI GGCGGA 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 406
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaiI YATR 5 cut(s) 234, 258, 294, 527, 535
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 112, 342, 459
Fsp4HI GCNGC 3 cut(s) 112, 342, 459
FspBI CTAG 4 cut(s) 146, 159, 297, 323
GluI GCNGC 3 cut(s) 112, 342, 459
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 3 cut(s) 14, 353, 486
HapII CCGG 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 8
HinfI GANTC 1 cut(s) 261
HpaII CCGG 1 cut(s) 336
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 3 cut(s) 37, 213, 512
Hpy188I TCNGA 4 cut(s) 167, 369, 452, 468
Hpy188III TCNNGA 1 cut(s) 542
Hpy8I GTNNAC 3 cut(s) 37, 213, 512
Hpy99I CGWCG 3 cut(s) 13, 201, 204
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 83, 213, 482, 512
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 233, 350
HpyF3I CTNAG 3 cut(s) 164, 272, 506
Hsp92I GRCGYC 1 cut(s) 8
Kzo9I GATC 2 cut(s) 68, 416
LmnI GCTCC 2 cut(s) 190, 481
Lsp1109I GCAGC 3 cut(s) 98, 353, 470
LweI GCATC 1 cut(s) 391
MaeI CTAG 4 cut(s) 146, 159, 297, 323
MaeIII GTNAC 2 cut(s) 315, 550
MalI GATC 2 cut(s) 70, 418
MboI GATC 2 cut(s) 68, 416
MboII GAAGA 1 cut(s) 69
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 2 cut(s) 215, 514
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 3 cut(s) 22, 94, 470
MluNI TGGCCA 1 cut(s) 353
MnlI CCTC 7 cut(s) 256, 275, 278, 281, 320, 498, 515
Mox20I TGGCCA 1 cut(s) 353
MscI TGGCCA 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 353
MspA1I CMGCKG 2 cut(s) 276, 344
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 2 cut(s) 31, 337
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 182, 233, 350
NciI CCSGG 1 cut(s) 337
NdeII GATC 2 cut(s) 68, 416
NmuCI GTSAC 2 cut(s) 315, 550
PfeI GAWTC 1 cut(s) 261
PkrI GCNGC 3 cut(s) 113, 343, 460
PsiI TTATAA 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspPI GGNCC 1 cut(s) 485
PstI CTGCAG 1 cut(s) 484
PsuI RGATCY 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SatI GCNGC 3 cut(s) 112, 342, 459
Sau3AI GATC 2 cut(s) 68, 416
Sau96I GGNCC 1 cut(s) 485
SbfI CCTGCAGG 1 cut(s) 484
ScrFI CCNGG 2 cut(s) 31, 337
SdaI CCTGCAGG 1 cut(s) 484
SduI GDGCHC 2 cut(s) 215, 514
SetI ASST 7 cut(s) 106, 187, 248, 346, 394, 463, 540
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 480
SpeI ACTAGT 1 cut(s) 158
Sse8387I CCTGCAGG 1 cut(s) 484
Sse9I AATT 3 cut(s) 22, 94, 470
SsiI CCGC 3 cut(s) 125, 227, 276
SspMI CTAG 4 cut(s) 146, 159, 297, 323
StyD4I CCNGG 2 cut(s) 29, 335
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 61
TasI AATT 3 cut(s) 22, 94, 470
TfiI GAWTC 1 cut(s) 261
TscAI CASTG 3 cut(s) 361, 514, 519
TseFI GTSAC 2 cut(s) 315, 550
TseI GCWGC 3 cut(s) 111, 341, 458
Tsp45I GTSAC 2 cut(s) 315, 550
TspDTI ATGAA 2 cut(s) 147, 386
TspRI CASTG 3 cut(s) 361, 514, 519
VneI GTGCAC 2 cut(s) 211, 510
XagI CCTNNNNNAGG 1 cut(s) 295
XapI RAATTY 2 cut(s) 94, 470
XspI CTAG 4 cut(s) 146, 159, 297, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.