histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 31 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 302, 407 |
| AccII | CGCG | 1 cut(s) | 533 |
| AclWI | GGATC | 3 cut(s) | 300, 313, 326 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 73, 302, 407 |
| AgsI | TTSAA | 1 cut(s) | 11 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 441 |
| AjnI | CCWGG | 1 cut(s) | 431 |
| AluBI | AGCT | 3 cut(s) | 259, 350, 383 |
| AluI | AGCT | 3 cut(s) | 259, 350, 383 |
| Alw26I | GTCTC | 3 cut(s) | 8, 160, 208 |
| AlwI | GGATC | 3 cut(s) | 300, 313, 326 |
| AoxI | GGCC | 1 cut(s) | 429 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 90, 342 |
| AspS9I | GGNCC | 1 cut(s) | 188 |
| AsuHPI | GGTGA | 2 cut(s) | 123, 285 |
| AvaII | GGWCC | 1 cut(s) | 188 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 300, 333 |
| BamHI | GGATCC | 1 cut(s) | 305 |
| BanI | GGYRCC | 1 cut(s) | 31 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 52, 84 |
| BauI | CACGAG | 1 cut(s) | 363 |
| BbsI | GAAGAC | 1 cut(s) | 500 |
| BccI | CCATC | 3 cut(s) | 43, 296, 481 |
| BciT130I | CCWGG | 1 cut(s) | 433 |
| BciVI | GTATCC | 1 cut(s) | 369 |
| BcoDI | GTCTC | 3 cut(s) | 8, 160, 208 |
| BfaI | CTAG | 1 cut(s) | 141 |
| BfmI | CTRYAG | 1 cut(s) | 177 |
| BfuI | GTATCC | 1 cut(s) | 369 |
| Bme1390I | CCNGG | 1 cut(s) | 433 |
| Bme18I | GGWCC | 1 cut(s) | 188 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 441 |
| BmgT120I | GGNCC | 1 cut(s) | 188 |
| BmiI | GGNNCC | 2 cut(s) | 33, 307 |
| BmrFI | CCNGG | 1 cut(s) | 433 |
| BmsI | GCATC | 1 cut(s) | 31 |
| BpiI | GAAGAC | 1 cut(s) | 500 |
| BsaBI | GATNNNNATC | 1 cut(s) | 310 |
| BsaI | GGTCTC | 2 cut(s) | 8, 208 |
| BsaJI | CCNNGG | 1 cut(s) | 96 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 73, 302, 407 |
| Bse8I | GATNNNNATC | 1 cut(s) | 310 |
| BseBI | CCWGG | 1 cut(s) | 433 |
| BseDI | CCNNGG | 1 cut(s) | 96 |
| BseJI | GATNNNNATC | 1 cut(s) | 310 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 73, 302, 407 |
| BseMII | CTCAG | 3 cut(s) | 86, 126, 212 |
| Bsh1236I | CGCG | 1 cut(s) | 533 |
| BshFI | GGCC | 1 cut(s) | 431 |
| BshNI | GGYRCC | 1 cut(s) | 31 |
| BslFI | GGGAC | 2 cut(s) | 404, 536 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 73, 302, 407 |
| BsmAI | GTCTC | 3 cut(s) | 8, 160, 208 |
| BsmFI | GGGAC | 2 cut(s) | 404, 536 |
| BsnI | GGCC | 1 cut(s) | 431 |
| Bso31I | GGTCTC | 2 cut(s) | 8, 208 |
| Bsp143I | GATC | 2 cut(s) | 305, 331 |
| Bsp19I | CCATGG | 1 cut(s) | 96 |
| Bsp68I | TCGCGA | 1 cut(s) | 533 |
| BspANI | GGCC | 1 cut(s) | 431 |
| BspCNI | CTCAG | 3 cut(s) | 85, 127, 211 |
| BspFNI | CGCG | 1 cut(s) | 533 |
| BspLI | GGNNCC | 2 cut(s) | 33, 307 |
| BspPI | GGATC | 3 cut(s) | 300, 313, 326 |
| BspQI | GCTCTTC | 1 cut(s) | 249 |
| BspT107I | GGYRCC | 1 cut(s) | 31 |
| BspTNI | GGTCTC | 2 cut(s) | 8, 208 |
| BssECI | CCNNGG | 1 cut(s) | 96 |
| BssMI | GATC | 2 cut(s) | 305, 331 |
| BssSI | CACGAG | 1 cut(s) | 363 |
| BssT1I | CCWWGG | 1 cut(s) | 96 |
| Bst2BI | CACGAG | 1 cut(s) | 363 |
| Bst2UI | CCWGG | 1 cut(s) | 433 |
| Bst4CI | ACNGT | 2 cut(s) | 19, 490 |
| Bst6I | CTCTTC | 2 cut(s) | 6, 249 |
| BstC8I | GCNNGC | 1 cut(s) | 261 |
| BstDEI | CTNAG | 4 cut(s) | 72, 126, 135, 198 |
| BstDSI | CCRYGG | 1 cut(s) | 96 |
| BstFNI | CGCG | 1 cut(s) | 533 |
| BstKTI | GATC | 2 cut(s) | 308, 334 |
| BstMAI | GTCTC | 3 cut(s) | 8, 160, 208 |
| BstMBI | GATC | 2 cut(s) | 305, 331 |
| BstNI | CCWGG | 1 cut(s) | 433 |
| BstSCI | CCNGG | 1 cut(s) | 431 |
| BstSFI | CTRYAG | 1 cut(s) | 177 |
| BstUI | CGCG | 1 cut(s) | 533 |
| BstV2I | GAAGAC | 1 cut(s) | 500 |
| BstX2I | RGATCY | 1 cut(s) | 305 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 439 |
| BstYI | RGATCY | 1 cut(s) | 305 |
| BsuI | GTATCC | 1 cut(s) | 369 |
| BsuRI | GGCC | 1 cut(s) | 431 |
| BtgI | CCRYGG | 1 cut(s) | 96 |
| BtsIMutI | CAGTG | 1 cut(s) | 495 |
| BtuMI | TCGCGA | 1 cut(s) | 533 |
| Cac8I | GCNNGC | 1 cut(s) | 261 |
| Cfr13I | GGNCC | 1 cut(s) | 188 |
| CviAII | CATG | 1 cut(s) | 97 |
| CviJI | RGCY | 6 cut(s) | 233, 259, 263, 350, 383, 431 |
| CviKI_1 | RGCY | 6 cut(s) | 233, 259, 263, 350, 383, 431 |
| DdeI | CTNAG | 4 cut(s) | 72, 126, 135, 198 |
| DpnI | GATC | 2 cut(s) | 307, 333 |
| DpnII | GATC | 2 cut(s) | 305, 331 |
| DriI | GACNNNNNGTC | 1 cut(s) | 441 |
| Eam1104I | CTCTTC | 2 cut(s) | 6, 249 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 441 |
| EarI | CTCTTC | 2 cut(s) | 6, 249 |
| Eco130I | CCWWGG | 1 cut(s) | 96 |
| Eco31I | GGTCTC | 2 cut(s) | 8, 208 |
| Eco47I | GGWCC | 1 cut(s) | 188 |
| EcoRII | CCWGG | 1 cut(s) | 431 |
| EcoT14I | CCWWGG | 1 cut(s) | 96 |
| ErhI | CCWWGG | 1 cut(s) | 96 |
| FaeI | CATG | 1 cut(s) | 100 |
| FaiI | YATR | 7 cut(s) | 98, 123, 193, 195, 374, 461, 549 |
| FaqI | GGGAC | 2 cut(s) | 404, 536 |
| FatI | CATG | 1 cut(s) | 96 |
| FauNDI | CATATG | 1 cut(s) | 193 |
| FspBI | CTAG | 1 cut(s) | 141 |
| HaeIII | GGCC | 1 cut(s) | 431 |
| Hin1II | CATG | 1 cut(s) | 100 |
| HinfI | GANTC | 4 cut(s) | 137, 153, 343, 528 |
| HphI | GGTGA | 2 cut(s) | 123, 285 |
| Hpy166II | GTNNAC | 1 cut(s) | 188 |
| Hpy188III | TCNNGA | 5 cut(s) | 39, 54, 74, 335, 532 |
| Hpy8I | GTNNAC | 1 cut(s) | 188 |
| HpyAV | CCTTC | 1 cut(s) | 78 |
| HpyCH4III | ACNGT | 2 cut(s) | 19, 490 |
| HpyCH4V | TGCA | 1 cut(s) | 22 |
| HpyF3I | CTNAG | 4 cut(s) | 72, 126, 135, 198 |
| Hsp92II | CATG | 1 cut(s) | 100 |
| Kzo9I | GATC | 2 cut(s) | 305, 331 |
| LguI | GCTCTTC | 1 cut(s) | 249 |
| LweI | GCATC | 1 cut(s) | 31 |
| MaeI | CTAG | 1 cut(s) | 141 |
| MaeIII | GTNAC | 3 cut(s) | 51, 129, 464 |
| MalI | GATC | 2 cut(s) | 307, 333 |
| MboI | GATC | 2 cut(s) | 305, 331 |
| MboII | GAAGA | 3 cut(s) | 23, 266, 505 |
| MflI | RGATCY | 1 cut(s) | 305 |
| MluCI | AATT | 2 cut(s) | 283, 516 |
| MlyI | GAGTC | 3 cut(s) | 146, 162, 522 |
| MmeI | TCCRAC | 1 cut(s) | 532 |
| MnlI | CCTC | 5 cut(s) | 138, 220, 372, 408, 421 |
| MroXI | GAANNNNTTC | 2 cut(s) | 90, 342 |
| MseI | TTAA | 2 cut(s) | 203, 482 |
| MspR9I | CCNGG | 1 cut(s) | 433 |
| MvaI | CCWGG | 1 cut(s) | 433 |
| MvnI | CGCG | 1 cut(s) | 533 |
| NcoI | CCATGG | 1 cut(s) | 96 |
| NdeI | CATATG | 1 cut(s) | 193 |
| NdeII | GATC | 2 cut(s) | 305, 331 |
| NlaIII | CATG | 1 cut(s) | 100 |
| NlaIV | GGNNCC | 2 cut(s) | 33, 307 |
| NmuCI | GTSAC | 2 cut(s) | 51, 129 |
| NruI | TCGCGA | 1 cut(s) | 533 |
| PciSI | GCTCTTC | 1 cut(s) | 249 |
| PdmI | GAANNNNTTC | 2 cut(s) | 90, 342 |
| PfeI | GAWTC | 1 cut(s) | 343 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 302, 407 |
| PleI | GAGTC | 3 cut(s) | 145, 161, 522 |
| PpsI | GAGTC | 3 cut(s) | 145, 161, 522 |
| Psp6I | CCWGG | 1 cut(s) | 431 |
| PspGI | CCWGG | 1 cut(s) | 431 |
| PspN4I | GGNNCC | 2 cut(s) | 33, 307 |
| PspPI | GGNCC | 1 cut(s) | 188 |
| PsuI | RGATCY | 1 cut(s) | 305 |
| RruI | TCGCGA | 1 cut(s) | 533 |
| SapI | GCTCTTC | 1 cut(s) | 249 |
| SaqAI | TTAA | 2 cut(s) | 203, 482 |
| Sau3AI | GATC | 2 cut(s) | 305, 331 |
| Sau96I | GGNCC | 1 cut(s) | 188 |
| SchI | GAGTC | 3 cut(s) | 146, 162, 522 |
| ScrFI | CCNGG | 1 cut(s) | 433 |
| SetI | ASST | 8 cut(s) | 92, 136, 220, 231, 261, 301, 352, 385 |
| SfaNI | GCATC | 1 cut(s) | 31 |
| SfcI | CTRYAG | 1 cut(s) | 177 |
| SinI | GGWCC | 1 cut(s) | 188 |
| Sse9I | AATT | 2 cut(s) | 283, 516 |
| SspMI | CTAG | 1 cut(s) | 141 |
| StyD4I | CCNGG | 1 cut(s) | 431 |
| StyI | CCWWGG | 1 cut(s) | 96 |
| TaaI | ACNGT | 2 cut(s) | 19, 490 |
| TaqI | TCGA | 1 cut(s) | 276 |
| TasI | AATT | 2 cut(s) | 283, 516 |
| TfiI | GAWTC | 1 cut(s) | 343 |
| Tru1I | TTAA | 2 cut(s) | 203, 482 |
| Tru9I | TTAA | 2 cut(s) | 203, 482 |
| TscAI | CASTG | 1 cut(s) | 495 |
| TseFI | GTSAC | 2 cut(s) | 51, 129 |
| Tsp45I | GTSAC | 2 cut(s) | 51, 129 |
| TspDTI | ATGAA | 1 cut(s) | 267 |
| TspRI | CASTG | 1 cut(s) | 495 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 302, 407 |
| VpaK11BI | GGWCC | 1 cut(s) | 188 |
| XmnI | GAANNNNTTC | 2 cut(s) | 90, 342 |
| XspI | CTAG | 1 cut(s) | 141 |