histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2124 |
| Acc36I | ACCTGC | 1 cut(s) | 458 |
| AccB1I | GGYRCC | 2 cut(s) | 251, 2331 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1376, 1445 |
| AccI | GTMKAC | 1 cut(s) | 1215 |
| AclWI | GGATC | 6 cut(s) | 544, 1097, 1507, 2416, 2580, 2988 |
| AcsI | RAATTY | 5 cut(s) | 865, 1788, 2192, 2550, 2901 |
| AcuI | CTGAAG | 7 cut(s) | 96, 1020, 1325, 1962, 2198, 2589, 2679 |
| AfaI | GTAC | 7 cut(s) | 226, 240, 294, 481, 1269, 1522, 2365 |
| AflIII | ACRYGT | 2 cut(s) | 802, 1579 |
| AhlI | ACTAGT | 1 cut(s) | 2309 |
| AjnI | CCWGG | 2 cut(s) | 860, 1438 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 11, 43, 2807, 2839 |
| AleI | CACNNNNGTG | 1 cut(s) | 1582 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 183, 215, 1002, 1034 |
| Alw21I | GWGCWC | 2 cut(s) | 2640, 3047 |
| Alw26I | GTCTC | 4 cut(s) | 163, 811, 1661, 1817 |
| Alw44I | GTGCAC | 1 cut(s) | 3043 |
| AlwI | GGATC | 6 cut(s) | 544, 1097, 1507, 2416, 2580, 2988 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 473 |
| AoxI | GGCC | 4 cut(s) | 858, 1774, 1903, 2102 |
| ApaLI | GTGCAC | 1 cut(s) | 3043 |
| ApeKI | GCWGC | 6 cut(s) | 776, 848, 851, 1283, 1531, 2807 |
| ApoI | RAATTY | 5 cut(s) | 865, 1788, 2192, 2550, 2901 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 730, 966 |
| AspS9I | GGNCC | 4 cut(s) | 470, 1903, 2102, 2480 |
| AsuC2I | CCSGG | 1 cut(s) | 183 |
| AsuII | TTCGAA | 1 cut(s) | 2298 |
| AvaII | GGWCC | 2 cut(s) | 470, 2480 |
| BaeGI | GKGCMC | 2 cut(s) | 1589, 3047 |
| BanI | GGYRCC | 2 cut(s) | 251, 2331 |
| BanII | GRGCYC | 1 cut(s) | 2640 |
| BbsI | GAAGAC | 1 cut(s) | 805 |
| Bbv12I | GWGCWC | 2 cut(s) | 2640, 3047 |
| BbvI | GCAGC | 6 cut(s) | 788, 835, 838, 1270, 1543, 2794 |
| BceAI | ACGGC | 1 cut(s) | 1316 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2728, 2762 |
| BciT130I | CCWGG | 2 cut(s) | 862, 1440 |
| BclI | TGATCA | 2 cut(s) | 487, 2884 |
| BcnI | CCSGG | 1 cut(s) | 183 |
| BcoDI | GTCTC | 4 cut(s) | 163, 811, 1661, 1817 |
| BcuI | ACTAGT | 1 cut(s) | 2309 |
| BfaI | CTAG | 4 cut(s) | 42, 635, 2046, 2310 |
| BfmI | CTRYAG | 2 cut(s) | 774, 1044 |
| BfuAI | ACCTGC | 1 cut(s) | 458 |
| BisI | GCNGC | 9 cut(s) | 777, 849, 852, 1284, 1532, 1676, 2335, 2808, 2925 |
| BlpI | GCTNAGC | 2 cut(s) | 506, 2457 |
| BlsI | GCNGC | 9 cut(s) | 778, 850, 853, 1285, 1533, 1677, 2336, 2809, 2926 |
| Bme1390I | CCNGG | 3 cut(s) | 183, 862, 1440 |
| Bme18I | GGWCC | 2 cut(s) | 470, 2480 |
| BmgT120I | GGNCC | 4 cut(s) | 470, 1903, 2102, 2480 |
| BmiI | GGNNCC | 7 cut(s) | 253, 372, 708, 1938, 2103, 2333, 3034 |
| BmrFI | CCNGG | 3 cut(s) | 183, 862, 1440 |
| BmrI | ACTGGG | 2 cut(s) | 123, 1280 |
| BmsI | GCATC | 8 cut(s) | 62, 439, 1295, 1858, 1859, 2363, 2743, 2794 |
| BmuI | ACTGGG | 2 cut(s) | 123, 1280 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2054 |
| BpiI | GAAGAC | 1 cut(s) | 805 |
| BpmI | CTGGAG | 1 cut(s) | 1029 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 506, 2457 |
| Bpu14I | TTCGAA | 1 cut(s) | 2298 |
| BpuEI | CTTGAG | 2 cut(s) | 1122, 2746 |
| BpuMI | CCSGG | 1 cut(s) | 183 |
| BsaAI | YACGTR | 1 cut(s) | 2204 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2682 |
| BsaJI | CCNNGG | 5 cut(s) | 1298, 1438, 1516, 1906, 2349 |
| Bse1I | ACTGG | 8 cut(s) | 129, 255, 374, 1012, 1275, 1839, 2524, 3052 |
| Bse3DI | GCAATG | 4 cut(s) | 216, 1153, 1624, 1670 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2682 |
| BseBI | CCWGG | 2 cut(s) | 862, 1440 |
| BseDI | CCNNGG | 5 cut(s) | 1298, 1438, 1516, 1906, 2349 |
| BseJI | GATNNNNATC | 1 cut(s) | 2682 |
| BseMI | GCAATG | 4 cut(s) | 216, 1153, 1624, 1670 |
| BseMII | CTCAG | 7 cut(s) | 245, 299, 486, 570, 822, 2376, 2919 |
| BseNI | ACTGG | 8 cut(s) | 129, 255, 374, 1012, 1275, 1839, 2524, 3052 |
| BseRI | GAGGAG | 3 cut(s) | 783, 1125, 1581 |
| BseSI | GKGCMC | 2 cut(s) | 1589, 3047 |
| BseXI | GCAGC | 6 cut(s) | 788, 835, 838, 1270, 1543, 2794 |
| BseYI | CCCAGC | 1 cut(s) | 314 |
| BsgI | GTGCAG | 2 cut(s) | 2421, 2793 |
| BshFI | GGCC | 4 cut(s) | 860, 1776, 1905, 2104 |
| BshNI | GGYRCC | 2 cut(s) | 251, 2331 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2640, 3047 |
| BsiSI | CCGG | 1 cut(s) | 182 |
| BslFI | GGGAC | 3 cut(s) | 833, 1050, 1174 |
| BsmAI | GTCTC | 4 cut(s) | 163, 811, 1661, 1817 |
| BsmFI | GGGAC | 3 cut(s) | 833, 1050, 1174 |
| BsmI | GAATGC | 2 cut(s) | 850, 1463 |
| BsnI | GGCC | 4 cut(s) | 860, 1776, 1905, 2104 |
| Bsp119I | TTCGAA | 1 cut(s) | 2298 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1589, 2640, 3047 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 506, 2457 |
| BspANI | GGCC | 4 cut(s) | 860, 1776, 1905, 2104 |
| BspCNI | CTCAG | 7 cut(s) | 244, 298, 487, 569, 821, 2377, 2920 |
| BspHI | TCATGA | 3 cut(s) | 970, 2887, 2989 |
| BspLI | GGNNCC | 7 cut(s) | 253, 372, 708, 1938, 2103, 2333, 3034 |
| BspMAI | CTGCAG | 1 cut(s) | 778 |
| BspMI | ACCTGC | 1 cut(s) | 458 |
| BspPI | GGATC | 6 cut(s) | 544, 1097, 1507, 2416, 2580, 2988 |
| BspQI | GCTCTTC | 1 cut(s) | 870 |
| BspT104I | TTCGAA | 1 cut(s) | 2298 |
| BspT107I | GGYRCC | 2 cut(s) | 251, 2331 |
| BsrDI | GCAATG | 4 cut(s) | 216, 1153, 1624, 1670 |
| BsrI | ACTGG | 8 cut(s) | 129, 255, 374, 1012, 1275, 1839, 2524, 3052 |
| BssECI | CCNNGG | 5 cut(s) | 1298, 1438, 1516, 1906, 2349 |
| BssNAI | GTATAC | 1 cut(s) | 1216 |
| BssT1I | CCWWGG | 3 cut(s) | 1516, 1906, 2349 |
| Bst1107I | GTATAC | 1 cut(s) | 1216 |
| Bst2UI | CCWGG | 2 cut(s) | 862, 1440 |
| Bst4CI | ACNGT | 3 cut(s) | 49, 619, 1232 |
| Bst6I | CTCTTC | 5 cut(s) | 693, 736, 870, 1747, 2640 |
| BstBAI | YACGTR | 1 cut(s) | 2204 |
| BstBI | TTCGAA | 1 cut(s) | 2298 |
| BstC8I | GCNNGC | 4 cut(s) | 1529, 2163, 2339, 3053 |
| BstDSI | CCRYGG | 1 cut(s) | 1298 |
| BstMAI | GTCTC | 4 cut(s) | 163, 811, 1661, 1817 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 605, 857, 1746, 1782 |
| BstNI | CCWGG | 2 cut(s) | 862, 1440 |
| BstNSI | RCATGY | 3 cut(s) | 806, 1043, 1583 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2054 |
| BstSCI | CCNGG | 3 cut(s) | 181, 860, 1438 |
| BstSFI | CTRYAG | 2 cut(s) | 774, 1044 |
| BstSLI | GKGCMC | 2 cut(s) | 1589, 3047 |
| BstV1I | GCAGC | 6 cut(s) | 788, 835, 838, 1270, 1543, 2794 |
| BstV2I | GAAGAC | 1 cut(s) | 805 |
| BstX2I | RGATCY | 3 cut(s) | 1499, 2421, 2585 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 262 |
| BstYI | RGATCY | 3 cut(s) | 1499, 2421, 2585 |
| BstZ17I | GTATAC | 1 cut(s) | 1216 |
| BsuRI | GGCC | 4 cut(s) | 860, 1776, 1905, 2104 |
| BtgI | CCRYGG | 1 cut(s) | 1298 |
| BtgZI | GCGATG | 1 cut(s) | 39 |
| BtsIMutI | CAGTG | 3 cut(s) | 262, 1125, 3045 |
| BveI | ACCTGC | 1 cut(s) | 458 |
| Cac8I | GCNNGC | 4 cut(s) | 1529, 2163, 2339, 3053 |
| CaiI | CAGNNNCTG | 1 cut(s) | 473 |
| CciI | TCATGA | 3 cut(s) | 970, 2887, 2989 |
| Cfr13I | GGNCC | 4 cut(s) | 470, 1903, 2102, 2480 |
| Csp6I | GTAC | 7 cut(s) | 225, 239, 293, 480, 1268, 1521, 2364 |
| CviQI | GTAC | 7 cut(s) | 225, 239, 293, 480, 1268, 1521, 2364 |
| DraI | TTTAAA | 2 cut(s) | 1483, 2557 |
| Eam1104I | CTCTTC | 5 cut(s) | 693, 736, 870, 1747, 2640 |
| EarI | CTCTTC | 5 cut(s) | 693, 736, 870, 1747, 2640 |
| EciI | GGCGGA | 1 cut(s) | 168 |
| Ecl136II | GAGCTC | 1 cut(s) | 2638 |
| Eco130I | CCWWGG | 3 cut(s) | 1516, 1906, 2349 |
| Eco24I | GRGCYC | 1 cut(s) | 2640 |
| Eco32I | GATATC | 1 cut(s) | 788 |
| Eco47I | GGWCC | 2 cut(s) | 470, 2480 |
| Eco53kI | GAGCTC | 1 cut(s) | 2638 |
| Eco57I | CTGAAG | 7 cut(s) | 96, 1020, 1325, 1962, 2198, 2589, 2679 |
| EcoICRI | GAGCTC | 1 cut(s) | 2638 |
| EcoO109I | RGGNCCY | 2 cut(s) | 470, 2102 |
| EcoRI | GAATTC | 1 cut(s) | 2901 |
| EcoRII | CCWGG | 2 cut(s) | 860, 1438 |
| EcoRV | GATATC | 1 cut(s) | 788 |
| EcoT14I | CCWWGG | 3 cut(s) | 1516, 1906, 2349 |
| EcoT22I | ATGCAT | 1 cut(s) | 1076 |
| EcoT38I | GRGCYC | 1 cut(s) | 2640 |
| ErhI | CCWWGG | 3 cut(s) | 1516, 1906, 2349 |
| FaqI | GGGAC | 3 cut(s) | 833, 1050, 1174 |
| FauI | CCCGC | 5 cut(s) | 30, 411, 503, 1754, 2346 |
| FauNDI | CATATG | 1 cut(s) | 2053 |
| FbaI | TGATCA | 2 cut(s) | 487, 2884 |
| FblI | GTMKAC | 1 cut(s) | 1215 |
| Fnu4HI | GCNGC | 9 cut(s) | 777, 849, 852, 1284, 1532, 1676, 2335, 2808, 2925 |
| FriOI | GRGCYC | 1 cut(s) | 2640 |
| Fsp4HI | GCNGC | 9 cut(s) | 777, 849, 852, 1284, 1532, 1676, 2335, 2808, 2925 |
| FspBI | CTAG | 4 cut(s) | 42, 635, 2046, 2310 |
| GluI | GCNGC | 9 cut(s) | 777, 849, 852, 1284, 1532, 1676, 2335, 2808, 2925 |
| GsaI | CCCAGC | 1 cut(s) | 318 |
| GsuI | CTGGAG | 1 cut(s) | 1029 |
| HaeIII | GGCC | 4 cut(s) | 860, 1776, 1905, 2104 |
| HapII | CCGG | 1 cut(s) | 182 |
| HincII | GTYRAC | 2 cut(s) | 2153, 2955 |
| HindII | GTYRAC | 2 cut(s) | 2153, 2955 |
| HindIII | AAGCTT | 2 cut(s) | 267, 1952 |
| HpaII | CCGG | 1 cut(s) | 182 |
| Hpy166II | GTNNAC | 6 cut(s) | 293, 544, 1216, 2153, 2955, 3045 |
| Hpy8I | GTNNAC | 6 cut(s) | 293, 544, 1216, 2153, 2955, 3045 |
| HpyCH4III | ACNGT | 3 cut(s) | 49, 619, 1232 |
| HpyCH4IV | ACGT | 1 cut(s) | 2203 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 605, 857, 1746, 1782 |
| HpySE526I | ACGT | 1 cut(s) | 2203 |
| Ksp22I | TGATCA | 2 cut(s) | 487, 2884 |
| LguI | GCTCTTC | 1 cut(s) | 870 |
| LmnI | GCTCC | 2 cut(s) | 370, 2643 |
| Lsp1109I | GCAGC | 6 cut(s) | 788, 835, 838, 1270, 1543, 2794 |
| LweI | GCATC | 8 cut(s) | 62, 439, 1295, 1858, 1859, 2363, 2743, 2794 |
| MaeI | CTAG | 4 cut(s) | 42, 635, 2046, 2310 |
| MaeII | ACGT | 1 cut(s) | 2203 |
| MaeIII | GTNAC | 5 cut(s) | 353, 682, 893, 1003, 1645 |
| MfeI | CAATTG | 2 cut(s) | 453, 1641 |
| MflI | RGATCY | 3 cut(s) | 1499, 2421, 2585 |
| MhlI | GDGCHC | 3 cut(s) | 1589, 2640, 3047 |
| MlyI | GAGTC | 4 cut(s) | 26, 1499, 2252, 2375 |
| MmeI | TCCRAC | 1 cut(s) | 864 |
| Mph1103I | ATGCAT | 1 cut(s) | 1076 |
| MroXI | GAANNNNTTC | 2 cut(s) | 730, 966 |
| MslI | CAYNNNNRTG | 3 cut(s) | 926, 975, 1582 |
| MspA1I | CMGCKG | 4 cut(s) | 560, 812, 2134, 2927 |
| MspI | CCGG | 1 cut(s) | 182 |
| MspR9I | CCNGG | 3 cut(s) | 183, 862, 1440 |
| MunI | CAATTG | 2 cut(s) | 453, 1641 |
| Mva1269I | GAATGC | 2 cut(s) | 850, 1463 |
| MvaI | CCWGG | 2 cut(s) | 862, 1440 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 605, 857, 1746, 1782 |
| NciI | CCSGG | 1 cut(s) | 183 |
| NdeI | CATATG | 1 cut(s) | 2053 |
| NlaIV | GGNNCC | 7 cut(s) | 253, 372, 708, 1938, 2103, 2333, 3034 |
| NmuCI | GTSAC | 4 cut(s) | 353, 682, 893, 1645 |
| NsiI | ATGCAT | 1 cut(s) | 1076 |
| NspI | RCATGY | 3 cut(s) | 806, 1043, 1583 |
| NspV | TTCGAA | 1 cut(s) | 2298 |
| OliI | CACNNNNGTG | 1 cut(s) | 1582 |
| PagI | TCATGA | 3 cut(s) | 970, 2887, 2989 |
| PciI | ACATGT | 2 cut(s) | 802, 1579 |
| PciSI | GCTCTTC | 1 cut(s) | 870 |
| PctI | GAATGC | 2 cut(s) | 850, 1463 |
| PdmI | GAANNNNTTC | 2 cut(s) | 730, 966 |
| PfeI | GAWTC | 7 cut(s) | 424, 578, 1558, 1999, 2014, 2027, 2993 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1376, 1445 |
| PkrI | GCNGC | 9 cut(s) | 778, 850, 853, 1285, 1533, 1677, 2336, 2809, 2926 |
| PleI | GAGTC | 4 cut(s) | 26, 1498, 2251, 2375 |
| PpsI | GAGTC | 4 cut(s) | 26, 1498, 2251, 2375 |
| Ppu21I | YACGTR | 1 cut(s) | 2204 |
| PpuMI | RGGWCCY | 1 cut(s) | 470 |
| PscI | ACATGT | 2 cut(s) | 802, 1579 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2054 |
| PsiI | TTATAA | 1 cut(s) | 2124 |
| Psp124BI | GAGCTC | 1 cut(s) | 2640 |
| Psp5II | RGGWCCY | 1 cut(s) | 470 |
| Psp6I | CCWGG | 2 cut(s) | 860, 1438 |
| PspFI | CCCAGC | 1 cut(s) | 314 |
| PspGI | CCWGG | 2 cut(s) | 860, 1438 |
| PspN4I | GGNNCC | 7 cut(s) | 253, 372, 708, 1938, 2103, 2333, 3034 |
| PspPI | GGNCC | 4 cut(s) | 470, 1903, 2102, 2480 |
| PspPPI | RGGWCCY | 1 cut(s) | 470 |
| PstI | CTGCAG | 1 cut(s) | 778 |
| PstNI | CAGNNNCTG | 1 cut(s) | 473 |
| PsuI | RGATCY | 3 cut(s) | 1499, 2421, 2585 |
| PvuII | CAGCTG | 3 cut(s) | 560, 812, 2134 |
| RsaI | GTAC | 7 cut(s) | 226, 240, 294, 481, 1269, 1522, 2365 |
| RsaNI | GTAC | 7 cut(s) | 225, 239, 293, 480, 1268, 1521, 2364 |
| RseI | CAYNNNNRTG | 3 cut(s) | 926, 975, 1582 |
| SacI | GAGCTC | 1 cut(s) | 2640 |
| SapI | GCTCTTC | 1 cut(s) | 870 |
| SatI | GCNGC | 9 cut(s) | 777, 849, 852, 1284, 1532, 1676, 2335, 2808, 2925 |
| Sau96I | GGNCC | 4 cut(s) | 470, 1903, 2102, 2480 |
| SchI | GAGTC | 4 cut(s) | 26, 1499, 2252, 2375 |
| ScrFI | CCNGG | 3 cut(s) | 183, 862, 1440 |
| SduI | GDGCHC | 3 cut(s) | 1589, 2640, 3047 |
| SfaNI | GCATC | 8 cut(s) | 62, 439, 1295, 1858, 1859, 2363, 2743, 2794 |
| SfcI | CTRYAG | 2 cut(s) | 774, 1044 |
| SfuI | TTCGAA | 1 cut(s) | 2298 |
| SinI | GGWCC | 2 cut(s) | 470, 2480 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 926, 975, 1582 |
| SmlI | CTYRAG | 2 cut(s) | 1137, 2761 |
| SmoI | CTYRAG | 2 cut(s) | 1137, 2761 |
| SpeI | ACTAGT | 1 cut(s) | 2309 |
| SspMI | CTAG | 4 cut(s) | 42, 635, 2046, 2310 |
| SstI | GAGCTC | 1 cut(s) | 2640 |
| StyD4I | CCNGG | 3 cut(s) | 181, 860, 1438 |
| StyI | CCWWGG | 3 cut(s) | 1516, 1906, 2349 |
| TaaI | ACNGT | 3 cut(s) | 49, 619, 1232 |
| TaiI | ACGT | 1 cut(s) | 2206 |
| TaqI | TCGA | 6 cut(s) | 796, 1234, 1320, 2220, 2298, 2738 |
| TatI | WGTACW | 2 cut(s) | 1267, 2363 |
| TauI | GCSGC | 3 cut(s) | 1678, 2337, 2927 |
| TfiI | GAWTC | 7 cut(s) | 424, 578, 1558, 1999, 2014, 2027, 2993 |
| TscAI | CASTG | 3 cut(s) | 262, 1132, 3052 |
| TseFI | GTSAC | 4 cut(s) | 353, 682, 893, 1645 |
| TseI | GCWGC | 6 cut(s) | 776, 848, 851, 1283, 1531, 2807 |
| Tsp45I | GTSAC | 4 cut(s) | 353, 682, 893, 1645 |
| TspGWI | ACGGA | 4 cut(s) | 298, 1411, 2827, 2931 |
| TspRI | CASTG | 3 cut(s) | 262, 1132, 3052 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1376, 1445 |
| VneI | GTGCAC | 1 cut(s) | 3043 |
| VpaK11BI | GGWCC | 2 cut(s) | 470, 2480 |
| XapI | RAATTY | 5 cut(s) | 865, 1788, 2192, 2550, 2901 |
| XceI | RCATGY | 3 cut(s) | 806, 1043, 1583 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1793, 2163 |
| XmiI | GTMKAC | 1 cut(s) | 1215 |
| XmnI | GAANNNNTTC | 2 cut(s) | 730, 966 |
| XspI | CTAG | 4 cut(s) | 42, 635, 2046, 2310 |
| Zsp2I | ATGCAT | 1 cut(s) | 1076 |