Rw7G018900

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000355
Physical Location & Seq
Reverse (-)
20645669 .. 20646862
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018900.1

Sequence Viewer

Length: 1194 bp
ATGGAAGATAGTGAGTGTTTTTCCCATACCAAGTTGCCAGAGTATAAGAGGTGCAGAGTCTCTGCTGTTCGTGATTATCCTTTAGGGTGTGGACCATTTGCTCACTTGAGTAACTTGAATGCCAATGCTACGGAGAGAATTTCAGATAAGAAATATCTTCCTCAATCAGTAGAAGCTGTTCGGGATTTTCCTCCTTTCTGTGGGATAAATGCTTCTCCTGAGGCCAGGAAATTCGGCCAAGAGAAGTCAGTTAGGGATTACAAGTCATCATCATCAAAGACAGTGAAGACTAATGTGAAACAAACAGGACTTGGGAACAAATTTCAACCTAACACTGAGAAGAAAATTGGAGGAAAGTCTCTAAAGAAGAATCATCATGTACCAGTAAGGGCTGCTTGTCAAGGTACAATTCTACTTGATATAAGGAAGAAGGAGTATTATCAGCATGATGAAAAAGAACACAATCATGTGATTCCAAAATCATGGAGTACAGATGGGTGCCCTCCTCCTTTTGGTTGTAGTAGTTCAAACCGCAGAAGTCATGATAATGACACAACTGAGAGAAACAAGGTAAAGGAGATATTGCATATGTTCCAAGATGAATGTGAAAAGCTCTTGCTGGAGGAAGAACATAAAAGATCAAAGGGAGAAGCAACTTCTTTCCGAAGGGTTGATTTGGAAGCCTTTAAGATCCTCAAGGATAGAGGAATCTTTGTAAAATCAGGCAAACATGTCATAGGAGATATCCCAGGAGTTGAAGTTGGTGATAAGTTTCAATACCGAGTGGAACTTATCCTTATTGGCCTACATCACCAGATTCAAGGTGGTATAGCTTATGGGAACTTCGGTGGTAAGGTCCTTGCAACCAGTATCGTTGCATCTGGTGGCTATGCAGATGATTTGCATAGTAAGGATTCGTTGATCTATACTGGCCAGGGAGGAAATGCAAAGAATGCAAAGGGCCCTCAAGATCAGAAGCTTGAACGGGGAAATCTTGCTTTAAAGAATAGTGTGCAAAAGAACCCTGTCAGAGTGATCCGTGGGTCCGAACTATTGGATGGAAGTAGGACATATGTCTATGATGGACTATATTTGGTAGAGAAATATTGGCAGGAAAGGGGGCCTCTTGGTAAGCTTGTTTTCAAGTTTCAGATGAACAGAATTGGAGGCAAGGAAAGTGACGTGCGAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

397

Amino Acids

44.51

Weight (kDa)

9.32

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 246 - 390 2e-49 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 498
AciI CCGC 1 cut(s) 532
AclWI GGATC 2 cut(s) 685, 1030
AcoI YGGCCR 2 cut(s) 235, 931
AcsI RAATTY 3 cut(s) 138, 230, 320
AfaI GTAC 3 cut(s) 381, 406, 490
AfiI CCNNNNNNNGG 2 cut(s) 200, 512
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 8 cut(s) 118, 326, 528, 758, 776, 821, 983, 1144
AjiI CACGTC 1 cut(s) 1183
AjnI CCWGG 3 cut(s) 224, 748, 933
AluBI AGCT 5 cut(s) 176, 613, 833, 979, 1135
AluI AGCT 5 cut(s) 176, 613, 833, 979, 1135
Alw26I GTCTC 2 cut(s) 64, 363
AlwI GGATC 2 cut(s) 685, 1030
AoxI GGCC 6 cut(s) 222, 235, 802, 931, 961, 1121
ApaI GGGCCC 1 cut(s) 965
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 3 cut(s) 138, 230, 320
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 6 cut(s) 92, 856, 961, 962, 1044, 1121
AsuHPI GGTGA 2 cut(s) 776, 803
AvaII GGWCC 3 cut(s) 92, 856, 1044
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 2 cut(s) 503, 965
BalI TGGCCA 1 cut(s) 933
BanI GGYRCC 1 cut(s) 498
BanII GRGCYC 1 cut(s) 965
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 379
BccI CCATC 3 cut(s) 488, 1052, 1076
BciT130I CCWGG 3 cut(s) 226, 750, 935
BcoDI GTCTC 2 cut(s) 64, 363
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 3 cut(s) 226, 750, 935
Bme18I GGWCC 3 cut(s) 92, 856, 1044
BmgBI CACGTC 1 cut(s) 1183
BmgT120I GGNCC 6 cut(s) 92, 856, 961, 962, 1044, 1121
BmiI GGNNCC 4 cut(s) 500, 963, 1045, 1122
BmrFI CCNGG 3 cut(s) 226, 750, 935
BmsI GCATC 1 cut(s) 887
BoxI GACNNNNGTC 1 cut(s) 1073
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 641
BpuEI CTTGAG 3 cut(s) 127, 680, 951
BsaJI CCNNGG 3 cut(s) 748, 934, 1039
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 512
Bse1I ACTGG 3 cut(s) 383, 867, 934
Bse21I CCTNAGG 1 cut(s) 219
BseBI CCWGG 3 cut(s) 226, 750, 935
BseDI CCNNGG 3 cut(s) 748, 934, 1039
BseGI GGATG 1 cut(s) 1063
BseLI CCNNNNNNNGG 2 cut(s) 200, 512
BseMII CTCAG 3 cut(s) 210, 327, 549
BseNI ACTGG 3 cut(s) 383, 867, 934
BseRI GAGGAG 1 cut(s) 495
BseSI GKGCMC 2 cut(s) 503, 965
BseXI GCAGC 1 cut(s) 379
BsgI GTGCAG 1 cut(s) 73
BshFI GGCC 6 cut(s) 224, 237, 804, 933, 963, 1123
BshNI GGYRCC 1 cut(s) 498
BslI CCNNNNNNNGG 2 cut(s) 200, 512
BsmAI GTCTC 2 cut(s) 64, 363
BsmI GAATGC 2 cut(s) 124, 958
BsnI GGCC 6 cut(s) 224, 237, 804, 933, 963, 1123
Bsp120I GGGCCC 1 cut(s) 961
Bsp1286I GDGCHC 2 cut(s) 503, 965
Bsp143I GATC 5 cut(s) 638, 690, 921, 970, 1035
BspACI CCGC 1 cut(s) 532
BspANI GGCC 6 cut(s) 224, 237, 804, 933, 963, 1123
BspCNI CTCAG 3 cut(s) 211, 328, 550
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 4 cut(s) 500, 963, 1045, 1122
BspPI GGATC 2 cut(s) 685, 1030
BspT107I GGYRCC 1 cut(s) 498
BsrI ACTGG 3 cut(s) 383, 867, 934
BssECI CCNNGG 3 cut(s) 748, 934, 1039
BssMI GATC 5 cut(s) 638, 690, 921, 970, 1035
Bst2UI CCWGG 3 cut(s) 226, 750, 935
Bst4CI ACNGT 1 cut(s) 283
BstAPI GCANNNNNTGC 1 cut(s) 953
BstDEI CTNAG 3 cut(s) 219, 336, 558
BstDSI CCRYGG 1 cut(s) 1039
BstF5I GGATG 1 cut(s) 1063
BstKTI GATC 5 cut(s) 641, 693, 924, 973, 1038
BstMAI GTCTC 2 cut(s) 64, 363
BstMBI GATC 5 cut(s) 638, 690, 921, 970, 1035
BstMWI GCNNNNNNNGC 1 cut(s) 953
BstNI CCWGG 3 cut(s) 226, 750, 935
BstNSI RCATGY 1 cut(s) 734
BstPAI GACNNNNGTC 1 cut(s) 1073
BstSCI CCNGG 3 cut(s) 224, 748, 933
BstSLI GKGCMC 2 cut(s) 503, 965
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 690
BstXI CCANNNNNNTGG 1 cut(s) 483
BstYI RGATCY 1 cut(s) 690
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 6 cut(s) 224, 237, 804, 933, 963, 1123
BtgI CCRYGG 1 cut(s) 1039
BtrI CACGTC 1 cut(s) 1183
BtsCI GGATG 1 cut(s) 1063
BtsIMutI CAGTG 2 cut(s) 288, 333
CciI TCATGA 1 cut(s) 541
Cfr13I GGNCC 6 cut(s) 92, 856, 961, 962, 1044, 1121
Csp6I GTAC 3 cut(s) 380, 405, 489
CviAII CATG 6 cut(s) 377, 446, 467, 483, 542, 731
CviQI GTAC 3 cut(s) 380, 405, 489
DdeI CTNAG 3 cut(s) 219, 336, 558
DpnI GATC 5 cut(s) 640, 692, 923, 972, 1037
DpnII GATC 5 cut(s) 638, 690, 921, 970, 1035
DraI TTTAAA 1 cut(s) 1002
EaeI YGGCCR 2 cut(s) 235, 931
Eco24I GRGCYC 1 cut(s) 965
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 3 cut(s) 92, 856, 1044
Eco81I CCTNAGG 1 cut(s) 219
EcoO109I RGGNCCY 4 cut(s) 856, 961, 962, 1121
EcoRII CCWGG 3 cut(s) 224, 748, 933
EcoRV GATATC 1 cut(s) 745
EcoT38I GRGCYC 1 cut(s) 965
FaeI CATG 6 cut(s) 380, 449, 470, 486, 545, 734
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FatI CATG 6 cut(s) 376, 445, 466, 482, 541, 730
FauNDI CATATG 2 cut(s) 588, 1072
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 1070
FriOI GRGCYC 1 cut(s) 965
Fsp4HI GCNGC 1 cut(s) 393
GluI GCNGC 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 641
HaeIII GGCC 6 cut(s) 224, 237, 804, 933, 963, 1123
Hin1II CATG 6 cut(s) 380, 449, 470, 486, 545, 734
HindIII AAGCTT 2 cut(s) 977, 1133
HinfI GANTC 6 cut(s) 57, 370, 472, 708, 817, 914
HphI GGTGA 2 cut(s) 776, 803
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 6 cut(s) 145, 665, 975, 1031, 1048, 1152
Hpy188III TCNNGA 5 cut(s) 71, 182, 218, 542, 968
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 424, 660
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 1182
HpyCH4V TGCA 9 cut(s) 54, 586, 863, 878, 893, 904, 947, 956, 1015
HpyF10VI GCNNNNNNNGC 1 cut(s) 953
HpyF3I CTNAG 3 cut(s) 219, 336, 558
HpySE526I ACGT 1 cut(s) 1182
Hsp92II CATG 6 cut(s) 380, 449, 470, 486, 545, 734
Kzo9I GATC 5 cut(s) 638, 690, 921, 970, 1035
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 887
MaeII ACGT 1 cut(s) 1182
MaeIII GTNAC 2 cut(s) 110, 1178
MalI GATC 5 cut(s) 640, 692, 923, 972, 1037
MboI GATC 5 cut(s) 638, 690, 921, 970, 1035
MboII GAAGA 7 cut(s) 17, 149, 298, 352, 379, 439, 638
MflI RGATCY 1 cut(s) 690
MhlI GDGCHC 2 cut(s) 503, 965
MlsI TGGCCA 1 cut(s) 933
MluCI AATT 6 cut(s) 138, 230, 320, 345, 408, 1161
MluNI TGGCCA 1 cut(s) 933
MlyI GAGTC 1 cut(s) 66
Mox20I TGGCCA 1 cut(s) 933
MroXI GAANNNNTTC 1 cut(s) 177
MscI TGGCCA 1 cut(s) 933
MseI TTAA 2 cut(s) 687, 1001
MslI CAYNNNNRTG 2 cut(s) 465, 546
Msp20I TGGCCA 1 cut(s) 933
MspR9I CCNGG 3 cut(s) 226, 750, 935
Mva1269I GAATGC 2 cut(s) 124, 958
MvaI CCWGG 3 cut(s) 226, 750, 935
MwoI GCNNNNNNNGC 1 cut(s) 953
NdeI CATATG 2 cut(s) 588, 1072
NdeII GATC 5 cut(s) 638, 690, 921, 970, 1035
NlaIII CATG 6 cut(s) 380, 449, 470, 486, 545, 734
NlaIV GGNNCC 4 cut(s) 500, 963, 1045, 1122
NmuCI GTSAC 1 cut(s) 1178
NspI RCATGY 1 cut(s) 734
PagI TCATGA 1 cut(s) 541
PciI ACATGT 1 cut(s) 730
PctI GAATGC 2 cut(s) 124, 958
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 5 cut(s) 370, 472, 708, 817, 914
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PpuMI RGGWCCY 1 cut(s) 856
PscI ACATGT 1 cut(s) 730
PshAI GACNNNNGTC 1 cut(s) 1073
Psp5II RGGWCCY 1 cut(s) 856
Psp6I CCWGG 3 cut(s) 224, 748, 933
PspGI CCWGG 3 cut(s) 224, 748, 933
PspN4I GGNNCC 4 cut(s) 500, 963, 1045, 1122
PspOMI GGGCCC 1 cut(s) 961
PspPI GGNCC 6 cut(s) 92, 856, 961, 962, 1044, 1121
PspPPI RGGWCCY 1 cut(s) 856
PsrI GAACNNNNNNTAC 2 cut(s) 162, 194
PsuI RGATCY 1 cut(s) 690
RsaI GTAC 3 cut(s) 381, 406, 490
RsaNI GTAC 3 cut(s) 380, 405, 489
RseI CAYNNNNRTG 2 cut(s) 465, 546
SaqAI TTAA 2 cut(s) 687, 1001
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 5 cut(s) 638, 690, 921, 970, 1035
Sau96I GGNCC 6 cut(s) 92, 856, 961, 962, 1044, 1121
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 3 cut(s) 226, 750, 935
SduI GDGCHC 2 cut(s) 503, 965
SfaNI GCATC 1 cut(s) 887
SinI GGWCC 3 cut(s) 92, 856, 1044
SmiMI CAYNNNNRTG 2 cut(s) 465, 546
SmlI CTYRAG 3 cut(s) 106, 695, 966
SmoI CTYRAG 3 cut(s) 106, 695, 966
Sse9I AATT 6 cut(s) 138, 230, 320, 345, 408, 1161
SsiI CCGC 1 cut(s) 532
SspI AATATT 1 cut(s) 1106
StyD4I CCNGG 3 cut(s) 224, 748, 933
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 1185
TasI AATT 6 cut(s) 138, 230, 320, 345, 408, 1161
TatI WGTACW 1 cut(s) 488
TfiI GAWTC 5 cut(s) 370, 472, 708, 817, 914
Tru1I TTAA 2 cut(s) 687, 1001
Tru9I TTAA 2 cut(s) 687, 1001
TscAI CASTG 2 cut(s) 288, 340
TseFI GTSAC 1 cut(s) 1178
TseI GCWGC 1 cut(s) 392
Tsp45I GTSAC 1 cut(s) 1178
TspDTI ATGAA 3 cut(s) 465, 615, 1169
TspGWI ACGGA 2 cut(s) 146, 1028
TspRI CASTG 2 cut(s) 288, 340
VpaK11BI GGWCC 3 cut(s) 92, 856, 1044
XapI RAATTY 3 cut(s) 138, 230, 320
XceI RCATGY 1 cut(s) 734
XcmI CCANNNNNNNNNTGG 1 cut(s) 821
XmnI GAANNNNTTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.