Prupe.2G064400_v2.0.a1

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000355
Physical Location & Seq
Forward (+)
8675023 .. 8675438
416 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G064400.1

Sequence Viewer

Length: 324 bp
ATGAAGAATGGCATTAGCCAACATGGCATTCAGTTTAATCTTGAGGTGTTTGGGACTAAATCAAAAGGATGGGGTGTTAGATCAAGATCGTACATTCCACATGGGAGTTTTGTATGTGAATACGTAGAATCTACTGGTGCAGACGTCTTTGTCATTGATGCCACACAACATGGGGAAGTGGGAAGATTTGTCAATCATAGTAGTCCTTCTCCTAATCTATTTTTACAAAGTGTCCTTTATGATCATGACGACGTGAGAATGCCACACATGATGTTATTTGCGAAGAAGAGCATACCACCGAAACAAGAGCTAACTTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

108

Amino Acids

12.07

Weight (kDa)

6.57

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AatII GACGTC 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 92
AjiI CACGTC 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
BccI CCATC 1 cut(s) 63
BclI TGATCA 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 24
BmgBI CACGTC 1 cut(s) 253
BmsI GCATC 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 85
BseGI GGATG 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 85
BseNI ACTGG 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 2 cut(s) 27, 264
Bsp143I GATC 3 cut(s) 80, 86, 241
BspHI TCATGA 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 139
BssMI GATC 3 cut(s) 80, 86, 241
BssNI GRCGYC 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 124
BstF5I GGATG 1 cut(s) 74
BstKTI GATC 3 cut(s) 83, 89, 244
BstMBI GATC 3 cut(s) 80, 86, 241
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstSNI TACGTA 1 cut(s) 124
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 74
CciI TCATGA 1 cut(s) 244
Csp6I GTAC 1 cut(s) 91
CviAII CATG 5 cut(s) 23, 101, 170, 245, 268
CviJI RGCY 2 cut(s) 18, 310
CviKI_1 RGCY 2 cut(s) 18, 310
CviQI GTAC 1 cut(s) 91
DpnI GATC 3 cut(s) 82, 88, 243
DpnII GATC 3 cut(s) 80, 86, 241
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco105I TACGTA 1 cut(s) 124
FaeI CATG 5 cut(s) 26, 104, 173, 248, 271
FaqI GGGAC 1 cut(s) 67
FatI CATG 5 cut(s) 22, 100, 169, 244, 267
FbaI TGATCA 1 cut(s) 241
FokI GGATG 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 5 cut(s) 26, 104, 173, 248, 271
HinfI GANTC 1 cut(s) 128
Hpy188III TCNNGA 3 cut(s) 41, 84, 245
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 216
HpyCH4IV ACGT 3 cut(s) 123, 144, 252
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpySE526I ACGT 3 cut(s) 123, 144, 252
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 5 cut(s) 26, 104, 173, 248, 271
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 3 cut(s) 80, 86, 241
LguI GCTCTTC 1 cut(s) 281
LpnPI CCDG 1 cut(s) 120
LweI GCATC 1 cut(s) 148
MaeII ACGT 3 cut(s) 123, 144, 252
MalI GATC 3 cut(s) 82, 88, 243
MboI GATC 3 cut(s) 80, 86, 241
MboII GAAGA 4 cut(s) 16, 195, 295, 298
MnlI CCTC 1 cut(s) 37
MseI TTAA 2 cut(s) 36, 322
Mva1269I GAATGC 2 cut(s) 27, 264
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 3 cut(s) 80, 86, 241
NlaIII CATG 5 cut(s) 26, 104, 173, 248, 271
PagI TCATGA 1 cut(s) 244
PciSI GCTCTTC 1 cut(s) 281
PctI GAATGC 2 cut(s) 27, 264
PfeI GAWTC 1 cut(s) 128
Ppu21I YACGTR 1 cut(s) 124
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 2 cut(s) 36, 322
Sau3AI GATC 3 cut(s) 80, 86, 241
SetI ASST 5 cut(s) 48, 126, 147, 255, 312
SfaNI GCATC 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SnaBI TACGTA 1 cut(s) 124
TaiI ACGT 3 cut(s) 126, 147, 255
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 36, 322
Tru9I TTAA 2 cut(s) 36, 322
TspDTI ATGAA 1 cut(s) 17
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.