Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8458607.1

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 265

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8458607.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atggtggttgaagagaccgtgcatcttttggcaccatcaagagaaaatgtgtcacgaagtaatatcccttctcaggaaagactggaaaggtttcccatggagaatggcgagtgtttttcccatactaagtcacctgagtctaggaggcgtagagtctctgctgtttgtgattttcctgtagggtgtggaccatatgctcagttaagcagtttgagacctgtcaaagaggtggcttctgttggtattccaaatgaagagctggct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

88

Amino Acids

9.8

Weight (kDa)

6.1

Isoelectric Point (pI)

89.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	11
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw26I	GTCTC	3 cut(s)	8, 160, 208
Asp700I	GAANNNNTTC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	31
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
BccI	CCATC	1 cut(s)	43
BcoDI	GTCTC	3 cut(s)	8, 160, 208
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	31
BsaI	GGTCTC	2 cut(s)	8, 208
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	3 cut(s)	86, 126, 212
BseNI	ACTGG	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	3 cut(s)	8, 160, 208
Bso31I	GGTCTC	2 cut(s)	8, 208
Bsp19I	CCATGG	1 cut(s)	96
BspCNI	CTCAG	3 cut(s)	85, 127, 211
BspLI	GGNNCC	1 cut(s)	33
BspQI	GCTCTTC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	2 cut(s)	8, 208
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	2 cut(s)	6, 249
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	4 cut(s)	72, 126, 135, 198
BstDSI	CCRYGG	1 cut(s)	96
BstMAI	GTCTC	3 cut(s)	8, 160, 208
BstSFI	CTRYAG	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	188
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	3 cut(s)	233, 259, 263
CviKI_1	RGCY	3 cut(s)	233, 259, 263
DdeI	CTNAG	4 cut(s)	72, 126, 135, 198
Eam1104I	CTCTTC	2 cut(s)	6, 249
EarI	CTCTTC	2 cut(s)	6, 249
Eco130I	CCWWGG	1 cut(s)	96
Eco31I	GGTCTC	2 cut(s)	8, 208
Eco47I	GGWCC	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	98, 123, 193, 195
FatI	CATG	1 cut(s)	96
FauNDI	CATATG	1 cut(s)	193
FspBI	CTAG	1 cut(s)	141
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	2 cut(s)	137, 153
HphI	GGTGA	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188III	TCNNGA	3 cut(s)	39, 54, 74
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	22
HpyF3I	CTNAG	4 cut(s)	72, 126, 135, 198
Hsp92II	CATG	1 cut(s)	100
LguI	GCTCTTC	1 cut(s)	249
LpnPI	CCDG	6 cut(s)	59, 68, 147, 189, 231, 245
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	51, 129
MboII	GAAGA	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	146, 162
MnlI	CCTC	2 cut(s)	138, 220
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	96
NdeI	CATATG	1 cut(s)	193
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	51, 129
PciSI	GCTCTTC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	90
PleI	GAGTC	2 cut(s)	145, 161
PpsI	GAGTC	2 cut(s)	145, 161
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	203
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	2 cut(s)	146, 162
SetI	ASST	5 cut(s)	92, 136, 220, 231, 261
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TseFI	GTSAC	2 cut(s)	51, 129
Tsp45I	GTSAC	2 cut(s)	51, 129
VpaK11BI	GGWCC	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.