Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001072.1

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Reverse (-)

2307 .. 3236

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001072.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgggttacaaaccatcatcattaaacacagtgaagactgatgtgaaacaaacgggaattggggacagagttcaacctaacactgaggaaaaaattcacagggaaaatccttttgatatatctcattctcccaaccatctgcatgaagaagattttgaaagctcgcgacttccattggataagttggttgtgttggattctgatcaattgcaggttagtatgggagacaaaccatcatcatcaaacactgccaagactaatgtgaaagaaccaggagtgaatcttcaaaatgaagagtttttgaaagaatgtggtcacagcattgagatgcgaaagaaggtgtcagctgcattgcgcctgtttagtgttgtttttgaaagtctagaagatgaaaagtcagaggaaggatctgcttctaaaagggttgatcttaaagctgcaaagattctcaataaggaaggaaggtttgtaaacacaggcaagcaaattattgggcctgtcccaggtgttgaggttggtgatgaatataaatacagagttgaactcacaattattggcttacatcgccagactcgagcaggtatagactttgtgatgcatggtggtaggattcttgccaccagcatcgttgcctcagggagctatgaagataagattagcaatgaaatgtctataatatatacaggccaaggaggaaattacatgcttccaaggaagaaagcttatgatcaggagcttaaaaggggaaaccttgctttgaagaacagtttggatgaacaaaatccgatcagactcattcataggctttactcttctgatggtcaaaggaaatacgtgtacaaagggctgtttgtagtaacaaaatgtttccggaaaagaggaactcggggaaagctggtttgggaatttcatttgcgcctcctgttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

309

Amino Acids

34.89

Weight (kDa)

9.16

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	202, 569
AccII	CGCG	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	870
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	2 cut(s)	93, 905
AfaI	GTAC	1 cut(s)	839
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	7 cut(s)	74, 158, 287, 304, 377, 542, 760
AjnI	CCWGG	2 cut(s)	271, 502
AjuI	GAANNNNNNNTTGG	4 cut(s)	752, 784, 883, 915
AluBI	AGCT	7 cut(s)	162, 347, 437, 642, 722, 736, 895
AluI	AGCT	7 cut(s)	162, 347, 437, 642, 722, 736, 895
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	415
Ama87I	CYCGRG	2 cut(s)	573, 885
Aor13HI	TCCGGA	1 cut(s)	870
AoxI	GGCC	2 cut(s)	494, 685
ApeKI	GCWGC	2 cut(s)	347, 437
ApoI	RAATTY	2 cut(s)	93, 905
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	357, 918
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	530
AvaI	CYCGRG	2 cut(s)	573, 885
AxyI	CCTNAGG	1 cut(s)	634
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	334, 424
BccI	CCATC	4 cut(s)	22, 144, 241, 812
BciT130I	CCWGG	2 cut(s)	273, 504
BclI	TGATCA	2 cut(s)	202, 727
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	383
BfuAI	ACCTGC	2 cut(s)	202, 569
BisI	GCNGC	2 cut(s)	348, 438
BlsI	GCNGC	2 cut(s)	349, 439
Bme1390I	CCNGG	2 cut(s)	273, 504
BmeT110I	CYCGRG	2 cut(s)	573, 885
BmgT120I	GGNCC	1 cut(s)	494
BmrFI	CCNGG	2 cut(s)	273, 504
BmsI	GCATC	3 cut(s)	318, 585, 633
BpiI	GAAGAC	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	528, 560
BsaAI	YACGTR	1 cut(s)	835
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	502, 688, 710
BsaWI	WCCGGW	1 cut(s)	870
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse21I	CCTNAGG	1 cut(s)	634
Bse3DI	GCAATG	2 cut(s)	350, 667
Bse8I	GATNNNNATC	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	870
BseBI	CCWGG	2 cut(s)	273, 504
BseDI	CCNNGG	3 cut(s)	502, 688, 710
BseGI	GGATG	1 cut(s)	778
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMI	GCAATG	2 cut(s)	350, 667
BseMII	CTCAG	2 cut(s)	75, 648
BseXI	GCAGC	2 cut(s)	334, 424
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	496, 687
BsiHKCI	CYCGRG	2 cut(s)	573, 885
BsiSI	CCGG	1 cut(s)	871
BslFI	GGGAC	2 cut(s)	77, 485
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	77, 485
BsnI	GGCC	2 cut(s)	496, 687
BsoBI	CYCGRG	2 cut(s)	573, 885
Bsp13I	TCCGGA	1 cut(s)	870
Bsp1407I	TGTACA	1 cut(s)	837
Bsp143I	GATC	5 cut(s)	202, 407, 427, 727, 786
Bsp68I	TCGCGA	1 cut(s)	166
BspANI	GGCC	2 cut(s)	496, 687
BspCNI	CTCAG	2 cut(s)	76, 647
BspEI	TCCGGA	1 cut(s)	870
BspFNI	CGCG	1 cut(s)	166
BspMI	ACCTGC	2 cut(s)	202, 569
BspPI	GGATC	1 cut(s)	415
BsrDI	GCAATG	2 cut(s)	350, 667
BsrGI	TGTACA	1 cut(s)	837
BssECI	CCNNGG	3 cut(s)	502, 688, 710
BssMI	GATC	5 cut(s)	202, 407, 427, 727, 786
BssT1I	CCWWGG	2 cut(s)	688, 710
Bst2UI	CCWGG	2 cut(s)	273, 504
Bst4CI	ACNGT	2 cut(s)	31, 767
Bst6I	CTCTTC	2 cut(s)	288, 817
BstAUI	TGTACA	1 cut(s)	837
BstBAI	YACGTR	1 cut(s)	835
BstC8I	GCNNGC	2 cut(s)	164, 482
BstDEI	CTNAG	2 cut(s)	84, 634
BstENI	CCTNNNNNAGG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	778
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	2 cut(s)	357, 918
BstKTI	GATC	5 cut(s)	205, 410, 430, 730, 789
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	5 cut(s)	202, 407, 427, 727, 786
BstMWI	GCNNNNNNNGC	1 cut(s)	564
BstNI	CCWGG	2 cut(s)	273, 504
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	2 cut(s)	271, 502
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	334, 424
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
Bsu36I	CCTNAGG	1 cut(s)	634
BsuRI	GGCC	2 cut(s)	496, 687
BtgZI	GCGATG	1 cut(s)	548
BtsCI	GGATG	1 cut(s)	778
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	36, 81, 246
BtuMI	TCGCGA	1 cut(s)	166
BveI	ACCTGC	2 cut(s)	202, 569
Cac8I	GCNNGC	2 cut(s)	164, 482
CfoI	GCGC	2 cut(s)	357, 918
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	838
CviAII	CATG	3 cut(s)	143, 599, 703
CviQI	GTAC	1 cut(s)	838
DdeI	CTNAG	2 cut(s)	84, 634
DpnI	GATC	5 cut(s)	204, 409, 429, 729, 788
DpnII	GATC	5 cut(s)	202, 407, 427, 727, 786
Eam1104I	CTCTTC	2 cut(s)	288, 817
EarI	CTCTTC	2 cut(s)	288, 817
Eco130I	CCWWGG	2 cut(s)	688, 710
Eco81I	CCTNAGG	1 cut(s)	634
Eco88I	CYCGRG	2 cut(s)	573, 885
EcoNI	CCTNNNNNAGG	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	271, 502
EcoT14I	CCWWGG	2 cut(s)	688, 710
EcoT22I	ATGCAT	1 cut(s)	600
ErhI	CCWWGG	2 cut(s)	688, 710
FaeI	CATG	3 cut(s)	146, 602, 706
FaqI	GGGAC	2 cut(s)	77, 485
FatI	CATG	3 cut(s)	142, 598, 702
FbaI	TGATCA	2 cut(s)	202, 727
Fnu4HI	GCNGC	2 cut(s)	348, 438
FokI	GGATG	1 cut(s)	785
Fsp4HI	GCNGC	2 cut(s)	348, 438
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	2 cut(s)	356, 917
GluI	GCNGC	2 cut(s)	348, 438
HaeIII	GGCC	2 cut(s)	496, 687
HapII	CCGG	1 cut(s)	871
HhaI	GCGC	2 cut(s)	357, 918
Hin1II	CATG	3 cut(s)	146, 602, 706
Hin6I	GCGC	2 cut(s)	355, 916
HinP1I	GCGC	2 cut(s)	355, 916
HindIII	AAGCTT	1 cut(s)	720
HinfI	GANTC	6 cut(s)	197, 280, 445, 571, 610, 792
HpaII	CCGG	1 cut(s)	871
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	2 cut(s)	472, 838
Hpy188I	TCNGA	5 cut(s)	202, 400, 786, 791, 817
Hpy188III	TCNNGA	4 cut(s)	165, 383, 731, 871
Hpy8I	GTNNAC	2 cut(s)	472, 838
HpyAV	CCTTC	4 cut(s)	331, 398, 452, 456
HpyCH4III	ACNGT	2 cut(s)	31, 767
HpyCH4IV	ACGT	1 cut(s)	834
HpyCH4V	TGCA	5 cut(s)	142, 211, 350, 440, 598
HpyF10VI	GCNNNNNNNGC	1 cut(s)	564
HpyF3I	CTNAG	2 cut(s)	84, 634
HpySE526I	ACGT	1 cut(s)	834
Hsp92II	CATG	3 cut(s)	146, 602, 706
HspAI	GCGC	2 cut(s)	355, 916
Kpn2I	TCCGGA	1 cut(s)	870
Ksp22I	TGATCA	2 cut(s)	202, 727
Kzo9I	GATC	5 cut(s)	202, 407, 427, 727, 786
LmnI	GCTCC	2 cut(s)	639, 733
Lsp1109I	GCAGC	2 cut(s)	334, 424
LweI	GCATC	3 cut(s)	318, 585, 633
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	834
MaeIII	GTNAC	3 cut(s)	5, 314, 856
MalI	GATC	5 cut(s)	204, 409, 429, 729, 788
MboI	GATC	5 cut(s)	202, 407, 427, 727, 786
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	1 cut(s)	407
MluCI	AATT	7 cut(s)	57, 93, 206, 486, 549, 697, 905
MlyI	GAGTC	2 cut(s)	565, 786
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	7 cut(s)	79, 394, 505, 643, 686, 872, 929
Mph1103I	ATGCAT	1 cut(s)	600
MroI	TCCGGA	1 cut(s)	870
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	3 cut(s)	23, 432, 738
MslI	CAYNNNNRTG	2 cut(s)	141, 326
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	871
MspR9I	CCNGG	2 cut(s)	273, 504
MunI	CAATTG	1 cut(s)	206
MvaI	CCWGG	2 cut(s)	273, 504
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	564
NdeII	GATC	5 cut(s)	202, 407, 427, 727, 786
NlaIII	CATG	3 cut(s)	146, 602, 706
NmuCI	GTSAC	1 cut(s)	314
NruI	TCGCGA	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	600
NspI	RCATGY	1 cut(s)	706
PaeR7I	CTCGAG	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	4 cut(s)	197, 280, 445, 610
PkrI	GCNGC	2 cut(s)	349, 439
PleI	GAGTC	2 cut(s)	565, 786
PpsI	GAGTC	2 cut(s)	565, 786
Ppu21I	YACGTR	1 cut(s)	835
Psp6I	CCWGG	2 cut(s)	271, 502
PspGI	CCWGG	2 cut(s)	271, 502
PspPI	GGNCC	1 cut(s)	494
PspXI	VCTCGAGB	1 cut(s)	573
PsuI	RGATCY	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	347
RruI	TCGCGA	1 cut(s)	166
RsaI	GTAC	1 cut(s)	839
RsaNI	GTAC	1 cut(s)	838
RseI	CAYNNNNRTG	2 cut(s)	141, 326
SaqAI	TTAA	3 cut(s)	23, 432, 738
SatI	GCNGC	2 cut(s)	348, 438
Sau3AI	GATC	5 cut(s)	202, 407, 427, 727, 786
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	2 cut(s)	565, 786
ScrFI	CCNGG	2 cut(s)	273, 504
SfaNI	GCATC	3 cut(s)	318, 585, 633
Sfr274I	CTCGAG	1 cut(s)	573
SlaI	CTCGAG	1 cut(s)	573
SmiMI	CAYNNNNRTG	2 cut(s)	141, 326
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	7 cut(s)	57, 93, 206, 486, 549, 697, 905
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	2 cut(s)	271, 502
StyI	CCWWGG	2 cut(s)	688, 710
TaaI	ACNGT	2 cut(s)	31, 767
TaiI	ACGT	1 cut(s)	837
TaqI	TCGA	1 cut(s)	574
TasI	AATT	7 cut(s)	57, 93, 206, 486, 549, 697, 905
TatI	WGTACW	1 cut(s)	837
TfiI	GAWTC	4 cut(s)	197, 280, 445, 610
Tru1I	TTAA	3 cut(s)	23, 432, 738
Tru9I	TTAA	3 cut(s)	23, 432, 738
TscAI	CASTG	3 cut(s)	36, 88, 253
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	2 cut(s)	347, 437
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	9 cut(s)	159, 306, 405, 537, 660, 678, 788, 789, 899
TspRI	CASTG	3 cut(s)	36, 88, 253
XagI	CCTNNNNNAGG	1 cut(s)	501
XapI	RAATTY	2 cut(s)	93, 905
XbaI	TCTAGA	1 cut(s)	382
XceI	RCATGY	1 cut(s)	706
XhoI	CTCGAG	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	383
Zsp2I	ATGCAT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.