Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Reverse (-)

11884180 .. 11886106

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGTGATTGAAAAGTCAGTGCCTCCCTTGGCATCATCAAAAGGAACTCTGTCACGAAGTAATGTTCCTTTTCAGGAAAGATTGGGAAGGTTTCCAATGGAGATTGGCGAGTGCTCTTCCCATACTAAGCCACCTGAGGGTAAGAGTACTCATAGACGCTCTGGTATTTGTGATGTTTCATTAGGGAGTGGACCAAGAGCTCGGGTAAGCAGTTTGAGACCTATCAGAGAAGCGGCTTCTGTTGGTATTTCAAAGGAAGAGATGGCTACAGGAGAAGAGTCTCATAATGAAGATGGCATGCGAATGAAGGTGAAAGCTGCTCAGCGCTCATTTTGGTTTGCTTTTAGAACTCTAAAAGATGATGATCCAAAGGGTAGGAGGTTTGATGCTAAGGCGGCAAAGGTTGTCAAGGCAAGTGGACGGTCTGTGAATGAAGGGAAGCCAATAATTGGGATTGTGCCGGGTGGTGATGTTGGTGACGATTATACATATAGAGCACAACTCGGTGTAATTGGGTTGCATAGACCAATTAGGGCAGGTATTGATTTTGTTAGGCATGGTGGCAAGAGGCTTGCCACTAGCATTGTGGCCTCGGGAAGCTATGAGGATGACATCAAAAATAAGAAGTCTATCAAATACACTGGCCATGGGGGCAACTACATGAATGAAGAGAAGAAGAAATATGATCAAAAGTTAGAGAGAGGAAACCTTGCTCTGAGGAATAGTTTTTACATGAAAAATTTGGTGAGGTTGATTCATAGGATCAAGAACTCGGATGGTGAATACAAGTATGTTTACAAGGGACTGTTTTTGGTGACCAAGTGCAGCCGGAAAAGAGGAAGACATGGAAAGCTTTTATGGGAGTTTCACCTTGTTTTCATTCACAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

298

Amino Acids

33.22

Weight (kDa)

10.04

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	150 - 292	1.8e-39	SAD/SRA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	527
AccB7I	CCANNNNNTGG	1 cut(s)	449
AciI	CCGC	2 cut(s)	233, 395
AclWI	GGATC	2 cut(s)	359, 770
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	1 cut(s)	739
AfaI	GTAC	1 cut(s)	148
AfeI	AGCGCT	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	137, 449
AgsI	TTSAA	2 cut(s)	11, 252
AluBI	AGCT	4 cut(s)	200, 317, 600, 853
AluI	AGCT	4 cut(s)	200, 317, 600, 853
Alw21I	GWGCWC	3 cut(s)	116, 202, 499
Alw26I	GTCTC	2 cut(s)	211, 285
AlwI	GGATC	2 cut(s)	359, 770
Ama87I	CYCGRG	2 cut(s)	201, 592
Aor51HI	AGCGCT	1 cut(s)	326
AoxI	GGCC	2 cut(s)	588, 643
ApeKI	GCWGC	2 cut(s)	317, 825
ApoI	RAATTY	1 cut(s)	739
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	8 cut(s)	16, 322, 479, 488, 757, 791, 826, 860
AvaI	CYCGRG	2 cut(s)	201, 592
AvaII	GGWCC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	645
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	847
Bbv12I	GWGCWC	3 cut(s)	116, 202, 499
BbvI	GCAGC	2 cut(s)	304, 837
BccI	CCATC	3 cut(s)	256, 287, 770
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	211, 285
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	328
BfuAI	ACCTGC	1 cut(s)	527
BglI	GCCNNNNNGGC	1 cut(s)	651
BisI	GCNGC	4 cut(s)	234, 318, 396, 826
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	4 cut(s)	235, 319, 397, 827
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	2 cut(s)	201, 592
BmgT120I	GGNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	41, 376
BpiI	GAAGAC	1 cut(s)	847
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	3 cut(s)	27, 591, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 449
Bse1I	ACTGG	1 cut(s)	646
Bse21I	CCTNAGG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	27, 591, 646
BseGI	GGATG	2 cut(s)	613, 781
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	2 cut(s)	137, 449
BseMII	CTCAG	3 cut(s)	126, 335, 707
BseNI	ACTGG	1 cut(s)	646
BseXI	GCAGC	2 cut(s)	304, 837
BsgI	GTGCAG	1 cut(s)	844
BshFI	GGCC	2 cut(s)	590, 645
BsiHKAI	GWGCWC	3 cut(s)	116, 202, 499
BsiHKCI	CYCGRG	2 cut(s)	201, 592
BsiSI	CCGG	2 cut(s)	461, 829
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	2 cut(s)	137, 449
BsmAI	GTCTC	2 cut(s)	211, 285
BsmFI	GGGAC	1 cut(s)	816
BsnI	GGCC	2 cut(s)	590, 645
Bso31I	GGTCTC	1 cut(s)	211
BsoBI	CYCGRG	2 cut(s)	201, 592
Bsp1286I	GDGCHC	3 cut(s)	116, 202, 499
Bsp143I	GATC	3 cut(s)	364, 685, 762
Bsp1720I	GCTNAGC	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	2 cut(s)	233, 395
BspANI	GGCC	2 cut(s)	590, 645
BspCNI	CTCAG	3 cut(s)	127, 334, 708
BspMI	ACCTGC	1 cut(s)	527
BspPI	GGATC	2 cut(s)	359, 770
BspQI	GCTCTTC	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	646
BssECI	CCNNGG	3 cut(s)	27, 591, 646
BssMI	GATC	3 cut(s)	364, 685, 762
BssT1I	CCWWGG	2 cut(s)	27, 646
Bst4CI	ACNGT	2 cut(s)	423, 807
Bst6I	CTCTTC	4 cut(s)	121, 252, 270, 663
BstC8I	GCNNGC	2 cut(s)	299, 573
BstDEI	CTNAG	5 cut(s)	126, 135, 321, 390, 716
BstDSI	CCRYGG	1 cut(s)	646
BstEII	GGTNACC	1 cut(s)	814
BstF5I	GGATG	2 cut(s)	613, 781
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	3 cut(s)	367, 688, 765
BstMAI	GTCTC	2 cut(s)	211, 285
BstMBI	GATC	3 cut(s)	364, 685, 762
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 651
BstNSI	RCATGY	1 cut(s)	301
BstPI	GGTNACC	1 cut(s)	814
BstSCI	CCNGG	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	304, 837
BstV2I	GAAGAC	1 cut(s)	847
Bsu36I	CCTNAGG	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	590, 645
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	2 cut(s)	613, 781
BtsIMutI	CAGTG	2 cut(s)	24, 639
BveI	ACCTGC	1 cut(s)	527
Cac8I	GCNNGC	2 cut(s)	299, 573
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	147
CspCI	CAANNNNNGTGG	4 cut(s)	397, 432, 565, 600
CviAII	CATG	6 cut(s)	298, 557, 647, 661, 733, 845
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	5 cut(s)	126, 135, 321, 390, 716
DpnI	GATC	3 cut(s)	366, 687, 764
DpnII	GATC	3 cut(s)	364, 685, 762
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	4 cut(s)	121, 252, 270, 663
EarI	CTCTTC	4 cut(s)	121, 252, 270, 663
Ecl136II	GAGCTC	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	27, 646
Eco24I	GRGCYC	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	200
Eco81I	CCTNAGG	1 cut(s)	135
Eco88I	CYCGRG	2 cut(s)	201, 592
Eco91I	GGTNACC	1 cut(s)	814
EcoICRI	GAGCTC	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	814
EcoT14I	CCWWGG	2 cut(s)	27, 646
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	2 cut(s)	27, 646
FaeI	CATG	6 cut(s)	301, 560, 650, 664, 736, 848
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	6 cut(s)	297, 556, 646, 660, 732, 844
FbaI	TGATCA	1 cut(s)	685
Fnu4HI	GCNGC	4 cut(s)	234, 318, 396, 826
FokI	GGATG	2 cut(s)	620, 788
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	4 cut(s)	234, 318, 396, 826
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	4 cut(s)	234, 318, 396, 826
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	2 cut(s)	590, 645
HapII	CCGG	2 cut(s)	461, 829
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	6 cut(s)	301, 560, 650, 664, 736, 848
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	2 cut(s)	278, 754
HpaII	CCGG	2 cut(s)	461, 829
HphI	GGTGA	8 cut(s)	16, 322, 479, 488, 757, 791, 826, 860
Hpy166II	GTNNAC	3 cut(s)	191, 419, 796
Hpy188I	TCNGA	3 cut(s)	227, 717, 775
Hpy188III	TCNNGA	4 cut(s)	54, 74, 594, 766
Hpy8I	GTNNAC	3 cut(s)	191, 419, 796
HpyAV	CCTTC	3 cut(s)	81, 301, 428
HpyCH4III	ACNGT	2 cut(s)	423, 807
HpyCH4V	TGCA	2 cut(s)	520, 825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 651
HpyF3I	CTNAG	5 cut(s)	126, 135, 321, 390, 716
Hsp92II	CATG	6 cut(s)	301, 560, 650, 664, 736, 848
HspAI	GCGC	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	3 cut(s)	364, 685, 762
LguI	GCTCTTC	1 cut(s)	121
LpnPI	CCDG	8 cut(s)	59, 147, 147, 255, 474, 522, 627, 842
Lsp1109I	GCAGC	2 cut(s)	304, 837
LweI	GCATC	2 cut(s)	41, 376
MaeI	CTAG	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	51, 476, 814
MalI	GATC	3 cut(s)	366, 687, 764
MboI	GATC	3 cut(s)	364, 685, 762
MboII	GAAGA	8 cut(s)	108, 269, 287, 302, 680, 685, 688, 852
MhlI	GDGCHC	3 cut(s)	116, 202, 499
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	4 cut(s)	447, 510, 528, 739
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	1 cut(s)	287
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	645
MspI	CCGG	2 cut(s)	461, 829
MspR9I	CCNGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	395, 651
NciI	CCSGG	1 cut(s)	462
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	3 cut(s)	364, 685, 762
NlaIII	CATG	6 cut(s)	301, 560, 650, 664, 736, 848
NmuCI	GTSAC	3 cut(s)	51, 476, 814
NspI	RCATGY	1 cut(s)	301
PaeI	GCATGC	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	754
PflMI	CCANNNNNTGG	1 cut(s)	449
PkrI	GCNGC	4 cut(s)	235, 319, 397, 827
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	814
PspPI	GGNCC	1 cut(s)	191
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	121
SatI	GCNGC	4 cut(s)	234, 318, 396, 826
Sau3AI	GATC	3 cut(s)	364, 685, 762
Sau96I	GGNCC	1 cut(s)	191
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	462
SduI	GDGCHC	3 cut(s)	116, 202, 499
SfaNI	GCATC	2 cut(s)	41, 376
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	4 cut(s)	447, 510, 528, 739
SsiI	CCGC	2 cut(s)	233, 395
SspMI	CTAG	1 cut(s)	579
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	2 cut(s)	27, 646
TaaI	ACNGT	2 cut(s)	423, 807
TasI	AATT	4 cut(s)	447, 510, 528, 739
TatI	WGTACW	1 cut(s)	146
TauI	GCSGC	2 cut(s)	236, 398
TfiI	GAWTC	1 cut(s)	754
TscAI	CASTG	2 cut(s)	24, 646
TseFI	GTSAC	3 cut(s)	51, 476, 814
TseI	GCWGC	2 cut(s)	317, 825
Tsp45I	GTSAC	3 cut(s)	51, 476, 814
TspDTI	ATGAA	9 cut(s)	168, 303, 320, 447, 677, 681, 746, 749, 868
TspRI	CASTG	2 cut(s)	24, 646
Van91I	CCANNNNNTGG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	739
XceI	RCATGY	1 cut(s)	301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XspI	CTAG	1 cut(s)	579
ZrmI	AGTACT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.