histone-lysine N-methyltransferase, H3 lysine-9 specific
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 314 - 456 | 2.4e-41 | SAD/SRA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 652, 1019 |
| AccB1I | GGYRCC | 1 cut(s) | 31 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 302, 407 |
| AccII | CGCG | 1 cut(s) | 625 |
| AccIII | TCCGGA | 1 cut(s) | 1320 |
| AclWI | GGATC | 4 cut(s) | 300, 313, 326, 865 |
| AcsI | RAATTY | 2 cut(s) | 552, 1355 |
| AfaI | GTAC | 1 cut(s) | 1289 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 73, 302, 407, 953 |
| AflIII | ACRYGT | 1 cut(s) | 1284 |
| AgsI | TTSAA | 9 cut(s) | 11, 533, 617, 737, 754, 827, 992, 1190, 1210 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 441 |
| AjnI | CCWGG | 3 cut(s) | 431, 721, 952 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1202, 1234, 1333, 1365 |
| AluBI | AGCT | 9 cut(s) | 259, 350, 383, 621, 887, 1092, 1172, 1186, 1345 |
| AluI | AGCT | 9 cut(s) | 259, 350, 383, 621, 887, 1092, 1172, 1186, 1345 |
| Alw26I | GTCTC | 4 cut(s) | 8, 160, 208, 669 |
| AlwI | GGATC | 4 cut(s) | 300, 313, 326, 865 |
| Ama87I | CYCGRG | 2 cut(s) | 1023, 1335 |
| Aor13HI | TCCGGA | 1 cut(s) | 1320 |
| AoxI | GGCC | 3 cut(s) | 429, 944, 1135 |
| ApeKI | GCWGC | 1 cut(s) | 887 |
| ApoI | RAATTY | 2 cut(s) | 552, 1355 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 90, 342 |
| AspLEI | GCGC | 2 cut(s) | 807, 1368 |
| AspS9I | GGNCC | 2 cut(s) | 188, 944 |
| AsuHPI | GGTGA | 4 cut(s) | 123, 285, 554, 980 |
| AvaI | CYCGRG | 2 cut(s) | 1023, 1335 |
| AvaII | GGWCC | 1 cut(s) | 188 |
| AxyI | CCTNAGG | 1 cut(s) | 1084 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 300, 333 |
| BamHI | GGATCC | 1 cut(s) | 305 |
| BanI | GGYRCC | 1 cut(s) | 31 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 52, 84 |
| BauI | CACGAG | 1 cut(s) | 363 |
| BbsI | GAAGAC | 1 cut(s) | 500 |
| BbvI | GCAGC | 1 cut(s) | 874 |
| BccI | CCATC | 4 cut(s) | 43, 603, 691, 1262 |
| BciT130I | CCWGG | 3 cut(s) | 433, 723, 954 |
| BciVI | GTATCC | 1 cut(s) | 369 |
| BclI | TGATCA | 2 cut(s) | 652, 1177 |
| BcoDI | GTCTC | 4 cut(s) | 8, 160, 208, 669 |
| BfaI | CTAG | 2 cut(s) | 141, 833 |
| BfmI | CTRYAG | 1 cut(s) | 177 |
| BfuAI | ACCTGC | 2 cut(s) | 652, 1019 |
| BfuI | GTATCC | 1 cut(s) | 369 |
| BisI | GCNGC | 1 cut(s) | 888 |
| BlsI | GCNGC | 1 cut(s) | 889 |
| Bme1390I | CCNGG | 3 cut(s) | 433, 723, 954 |
| Bme18I | GGWCC | 1 cut(s) | 188 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 441 |
| BmeT110I | CYCGRG | 2 cut(s) | 1023, 1335 |
| BmgT120I | GGNCC | 2 cut(s) | 188, 944 |
| BmiI | GGNNCC | 2 cut(s) | 33, 307 |
| BmrFI | CCNGG | 3 cut(s) | 433, 723, 954 |
| BmsI | GCATC | 5 cut(s) | 31, 482, 768, 1035, 1083 |
| BpiI | GAAGAC | 1 cut(s) | 500 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 978, 1010 |
| BpuEI | CTTGAG | 1 cut(s) | 884 |
| BsaAI | YACGTR | 1 cut(s) | 1285 |
| BsaBI | GATNNNNATC | 2 cut(s) | 310, 651 |
| BsaI | GGTCTC | 2 cut(s) | 8, 208 |
| BsaJI | CCNNGG | 4 cut(s) | 96, 952, 1138, 1160 |
| BsaWI | WCCGGW | 1 cut(s) | 1320 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 73, 302, 407, 953 |
| Bse21I | CCTNAGG | 1 cut(s) | 1084 |
| Bse3DI | GCAATG | 2 cut(s) | 800, 1117 |
| Bse8I | GATNNNNATC | 2 cut(s) | 310, 651 |
| BseAI | TCCGGA | 1 cut(s) | 1320 |
| BseBI | CCWGG | 3 cut(s) | 433, 723, 954 |
| BseDI | CCNNGG | 4 cut(s) | 96, 952, 1138, 1160 |
| BseGI | GGATG | 1 cut(s) | 1228 |
| BseJI | GATNNNNATC | 2 cut(s) | 310, 651 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 73, 302, 407, 953 |
| BseMI | GCAATG | 2 cut(s) | 800, 1117 |
| BseMII | CTCAG | 4 cut(s) | 86, 126, 212, 1098 |
| BseXI | GCAGC | 1 cut(s) | 874 |
| Bsh1236I | CGCG | 1 cut(s) | 625 |
| BshFI | GGCC | 3 cut(s) | 431, 946, 1137 |
| BshNI | GGYRCC | 1 cut(s) | 31 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1023, 1335 |
| BsiSI | CCGG | 1 cut(s) | 1321 |
| BslFI | GGGAC | 3 cut(s) | 404, 536, 935 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 73, 302, 407, 953 |
| BsmAI | GTCTC | 4 cut(s) | 8, 160, 208, 669 |
| BsmFI | GGGAC | 3 cut(s) | 404, 536, 935 |
| BsnI | GGCC | 3 cut(s) | 431, 946, 1137 |
| Bso31I | GGTCTC | 2 cut(s) | 8, 208 |
| BsoBI | CYCGRG | 2 cut(s) | 1023, 1335 |
| Bsp13I | TCCGGA | 1 cut(s) | 1320 |
| Bsp1407I | TGTACA | 1 cut(s) | 1287 |
| Bsp143I | GATC | 7 cut(s) | 305, 331, 652, 857, 877, 1177, 1236 |
| Bsp19I | CCATGG | 1 cut(s) | 96 |
| Bsp68I | TCGCGA | 1 cut(s) | 625 |
| BspANI | GGCC | 3 cut(s) | 431, 946, 1137 |
| BspCNI | CTCAG | 4 cut(s) | 85, 127, 211, 1097 |
| BspEI | TCCGGA | 1 cut(s) | 1320 |
| BspFNI | CGCG | 1 cut(s) | 625 |
| BspLI | GGNNCC | 2 cut(s) | 33, 307 |
| BspMI | ACCTGC | 2 cut(s) | 652, 1019 |
| BspPI | GGATC | 4 cut(s) | 300, 313, 326, 865 |
| BspQI | GCTCTTC | 1 cut(s) | 249 |
| BspT107I | GGYRCC | 1 cut(s) | 31 |
| BspTNI | GGTCTC | 2 cut(s) | 8, 208 |
| BsrDI | GCAATG | 2 cut(s) | 800, 1117 |
| BsrGI | TGTACA | 1 cut(s) | 1287 |
| BssECI | CCNNGG | 4 cut(s) | 96, 952, 1138, 1160 |
| BssMI | GATC | 7 cut(s) | 305, 331, 652, 857, 877, 1177, 1236 |
| BssSI | CACGAG | 1 cut(s) | 363 |
| BssT1I | CCWWGG | 3 cut(s) | 96, 1138, 1160 |
| Bst2BI | CACGAG | 1 cut(s) | 363 |
| Bst2UI | CCWGG | 3 cut(s) | 433, 723, 954 |
| Bst4CI | ACNGT | 4 cut(s) | 19, 490, 542, 1217 |
| Bst6I | CTCTTC | 3 cut(s) | 6, 249, 738 |
| BstAUI | TGTACA | 1 cut(s) | 1287 |
| BstBAI | YACGTR | 1 cut(s) | 1285 |
| BstC8I | GCNNGC | 3 cut(s) | 261, 623, 932 |
| BstDEI | CTNAG | 5 cut(s) | 72, 126, 135, 198, 1084 |
| BstDSI | CCRYGG | 1 cut(s) | 96 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 951 |
| BstF5I | GGATG | 1 cut(s) | 1228 |
| BstFNI | CGCG | 1 cut(s) | 625 |
| BstHHI | GCGC | 2 cut(s) | 807, 1368 |
| BstKTI | GATC | 7 cut(s) | 308, 334, 655, 860, 880, 1180, 1239 |
| BstMAI | GTCTC | 4 cut(s) | 8, 160, 208, 669 |
| BstMBI | GATC | 7 cut(s) | 305, 331, 652, 857, 877, 1177, 1236 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1014 |
| BstNI | CCWGG | 3 cut(s) | 433, 723, 954 |
| BstNSI | RCATGY | 1 cut(s) | 1156 |
| BstSCI | CCNGG | 3 cut(s) | 431, 721, 952 |
| BstSFI | CTRYAG | 1 cut(s) | 177 |
| BstUI | CGCG | 1 cut(s) | 625 |
| BstV1I | GCAGC | 1 cut(s) | 874 |
| BstV2I | GAAGAC | 1 cut(s) | 500 |
| BstX2I | RGATCY | 2 cut(s) | 305, 857 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 439 |
| BstYI | RGATCY | 2 cut(s) | 305, 857 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1084 |
| BsuI | GTATCC | 1 cut(s) | 369 |
| BsuRI | GGCC | 3 cut(s) | 431, 946, 1137 |
| BtgI | CCRYGG | 1 cut(s) | 96 |
| BtgZI | GCGATG | 1 cut(s) | 998 |
| BtsCI | GGATG | 1 cut(s) | 1228 |
| BtsI | GCAGTG | 1 cut(s) | 696 |
| BtsIMutI | CAGTG | 2 cut(s) | 495, 696 |
| BtuMI | TCGCGA | 1 cut(s) | 625 |
| BveI | ACCTGC | 2 cut(s) | 652, 1019 |
| Cac8I | GCNNGC | 3 cut(s) | 261, 623, 932 |
| CfoI | GCGC | 2 cut(s) | 807, 1368 |
| Cfr13I | GGNCC | 2 cut(s) | 188, 944 |
| Csp6I | GTAC | 1 cut(s) | 1288 |
| CviAII | CATG | 4 cut(s) | 97, 602, 1049, 1153 |
| CviQI | GTAC | 1 cut(s) | 1288 |
| DdeI | CTNAG | 5 cut(s) | 72, 126, 135, 198, 1084 |
| DpnI | GATC | 7 cut(s) | 307, 333, 654, 859, 879, 1179, 1238 |
| DpnII | GATC | 7 cut(s) | 305, 331, 652, 857, 877, 1177, 1236 |
| DriI | GACNNNNNGTC | 1 cut(s) | 441 |
| Eam1104I | CTCTTC | 3 cut(s) | 6, 249, 738 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 441 |
| EarI | CTCTTC | 3 cut(s) | 6, 249, 738 |
| Eco130I | CCWWGG | 3 cut(s) | 96, 1138, 1160 |
| Eco31I | GGTCTC | 2 cut(s) | 8, 208 |
| Eco47I | GGWCC | 1 cut(s) | 188 |
| Eco81I | CCTNAGG | 1 cut(s) | 1084 |
| Eco88I | CYCGRG | 2 cut(s) | 1023, 1335 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 951 |
| EcoRII | CCWGG | 3 cut(s) | 431, 721, 952 |
| EcoT14I | CCWWGG | 3 cut(s) | 96, 1138, 1160 |
| EcoT22I | ATGCAT | 1 cut(s) | 1050 |
| ErhI | CCWWGG | 3 cut(s) | 96, 1138, 1160 |
| FaeI | CATG | 4 cut(s) | 100, 605, 1052, 1156 |
| FaqI | GGGAC | 3 cut(s) | 404, 536, 935 |
| FatI | CATG | 4 cut(s) | 96, 601, 1048, 1152 |
| FauNDI | CATATG | 1 cut(s) | 193 |
| FbaI | TGATCA | 2 cut(s) | 652, 1177 |
| Fnu4HI | GCNGC | 1 cut(s) | 888 |
| FokI | GGATG | 1 cut(s) | 1235 |
| Fsp4HI | GCNGC | 1 cut(s) | 888 |
| FspBI | CTAG | 2 cut(s) | 141, 833 |
| GlaI | GCGC | 2 cut(s) | 806, 1367 |
| GluI | GCNGC | 1 cut(s) | 888 |
| HaeIII | GGCC | 3 cut(s) | 431, 946, 1137 |
| HapII | CCGG | 1 cut(s) | 1321 |
| HhaI | GCGC | 2 cut(s) | 807, 1368 |
| Hin1II | CATG | 4 cut(s) | 100, 605, 1052, 1156 |
| Hin6I | GCGC | 2 cut(s) | 805, 1366 |
| HinP1I | GCGC | 2 cut(s) | 805, 1366 |
| HindIII | AAGCTT | 2 cut(s) | 1170, 1184 |
| HinfI | GANTC | 8 cut(s) | 137, 153, 343, 647, 730, 1021, 1060, 1242 |
| HpaII | CCGG | 1 cut(s) | 1321 |
| HphI | GGTGA | 4 cut(s) | 123, 285, 554, 980 |
| Hpy166II | GTNNAC | 3 cut(s) | 188, 922, 1288 |
| Hpy188I | TCNGA | 6 cut(s) | 652, 850, 1182, 1236, 1241, 1267 |
| Hpy188III | TCNNGA | 8 cut(s) | 39, 54, 74, 335, 624, 833, 901, 1321 |
| Hpy8I | GTNNAC | 3 cut(s) | 188, 922, 1288 |
| HpyAV | CCTTC | 6 cut(s) | 78, 781, 848, 898, 902, 906 |
| HpyCH4III | ACNGT | 4 cut(s) | 19, 490, 542, 1217 |
| HpyCH4IV | ACGT | 1 cut(s) | 1284 |
| HpyCH4V | TGCA | 7 cut(s) | 22, 601, 661, 800, 890, 1048, 1110 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1014 |
| HpyF3I | CTNAG | 5 cut(s) | 72, 126, 135, 198, 1084 |
| HpySE526I | ACGT | 1 cut(s) | 1284 |
| Hsp92II | CATG | 4 cut(s) | 100, 605, 1052, 1156 |
| HspAI | GCGC | 2 cut(s) | 805, 1366 |
| Kpn2I | TCCGGA | 1 cut(s) | 1320 |
| Ksp22I | TGATCA | 2 cut(s) | 652, 1177 |
| Kzo9I | GATC | 7 cut(s) | 305, 331, 652, 857, 877, 1177, 1236 |
| LguI | GCTCTTC | 1 cut(s) | 249 |
| LmnI | GCTCC | 1 cut(s) | 1089 |
| Lsp1109I | GCAGC | 1 cut(s) | 874 |
| LweI | GCATC | 5 cut(s) | 31, 482, 768, 1035, 1083 |
| MaeI | CTAG | 2 cut(s) | 141, 833 |
| MaeII | ACGT | 1 cut(s) | 1284 |
| MaeIII | GTNAC | 5 cut(s) | 51, 129, 464, 764, 1306 |
| MalI | GATC | 7 cut(s) | 307, 333, 654, 859, 879, 1179, 1238 |
| MboI | GATC | 7 cut(s) | 305, 331, 652, 857, 877, 1177, 1236 |
| MfeI | CAATTG | 1 cut(s) | 656 |
| MflI | RGATCY | 2 cut(s) | 305, 857 |
| MluCI | AATT | 8 cut(s) | 283, 516, 552, 656, 936, 999, 1147, 1355 |
| MlyI | GAGTC | 4 cut(s) | 146, 162, 1015, 1236 |
| MmeI | TCCRAC | 1 cut(s) | 624 |
| Mph1103I | ATGCAT | 1 cut(s) | 1050 |
| MroI | TCCGGA | 1 cut(s) | 1320 |
| MroXI | GAANNNNTTC | 2 cut(s) | 90, 342 |
| MseI | TTAA | 3 cut(s) | 203, 482, 882 |
| MslI | CAYNNNNRTG | 2 cut(s) | 600, 776 |
| MspI | CCGG | 1 cut(s) | 1321 |
| MspR9I | CCNGG | 3 cut(s) | 433, 723, 954 |
| MunI | CAATTG | 1 cut(s) | 656 |
| MvaI | CCWGG | 3 cut(s) | 433, 723, 954 |
| MvnI | CGCG | 1 cut(s) | 625 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1014 |
| NcoI | CCATGG | 1 cut(s) | 96 |
| NdeI | CATATG | 1 cut(s) | 193 |
| NdeII | GATC | 7 cut(s) | 305, 331, 652, 857, 877, 1177, 1236 |
| NlaIII | CATG | 4 cut(s) | 100, 605, 1052, 1156 |
| NlaIV | GGNNCC | 2 cut(s) | 33, 307 |
| NmuCI | GTSAC | 3 cut(s) | 51, 129, 764 |
| NruI | TCGCGA | 1 cut(s) | 625 |
| NsiI | ATGCAT | 1 cut(s) | 1050 |
| NspI | RCATGY | 1 cut(s) | 1156 |
| PaeR7I | CTCGAG | 1 cut(s) | 1023 |
| PciSI | GCTCTTC | 1 cut(s) | 249 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1021 |
| PdmI | GAANNNNTTC | 2 cut(s) | 90, 342 |
| PfeI | GAWTC | 4 cut(s) | 343, 647, 730, 1060 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 302, 407 |
| PkrI | GCNGC | 1 cut(s) | 889 |
| PleI | GAGTC | 4 cut(s) | 145, 161, 1015, 1236 |
| PpsI | GAGTC | 4 cut(s) | 145, 161, 1015, 1236 |
| Ppu21I | YACGTR | 1 cut(s) | 1285 |
| Psp6I | CCWGG | 3 cut(s) | 431, 721, 952 |
| PspGI | CCWGG | 3 cut(s) | 431, 721, 952 |
| PspN4I | GGNNCC | 2 cut(s) | 33, 307 |
| PspPI | GGNCC | 2 cut(s) | 188, 944 |
| PspXI | VCTCGAGB | 1 cut(s) | 1023 |
| PsuI | RGATCY | 2 cut(s) | 305, 857 |
| RruI | TCGCGA | 1 cut(s) | 625 |
| RsaI | GTAC | 1 cut(s) | 1289 |
| RsaNI | GTAC | 1 cut(s) | 1288 |
| RseI | CAYNNNNRTG | 2 cut(s) | 600, 776 |
| SapI | GCTCTTC | 1 cut(s) | 249 |
| SaqAI | TTAA | 3 cut(s) | 203, 482, 882 |
| SatI | GCNGC | 1 cut(s) | 888 |
| Sau3AI | GATC | 7 cut(s) | 305, 331, 652, 857, 877, 1177, 1236 |
| Sau96I | GGNCC | 2 cut(s) | 188, 944 |
| SchI | GAGTC | 4 cut(s) | 146, 162, 1015, 1236 |
| ScrFI | CCNGG | 3 cut(s) | 433, 723, 954 |
| SfaNI | GCATC | 5 cut(s) | 31, 482, 768, 1035, 1083 |
| SfcI | CTRYAG | 1 cut(s) | 177 |
| Sfr274I | CTCGAG | 1 cut(s) | 1023 |
| SinI | GGWCC | 1 cut(s) | 188 |
| SlaI | CTCGAG | 1 cut(s) | 1023 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 600, 776 |
| SmlI | CTYRAG | 2 cut(s) | 899, 1023 |
| SmoI | CTYRAG | 2 cut(s) | 899, 1023 |
| Sse9I | AATT | 8 cut(s) | 283, 516, 552, 656, 936, 999, 1147, 1355 |
| SspI | AATATT | 1 cut(s) | 895 |
| SspMI | CTAG | 2 cut(s) | 141, 833 |
| StyD4I | CCNGG | 3 cut(s) | 431, 721, 952 |
| StyI | CCWWGG | 3 cut(s) | 96, 1138, 1160 |
| TaaI | ACNGT | 4 cut(s) | 19, 490, 542, 1217 |
| TaiI | ACGT | 1 cut(s) | 1287 |
| TaqI | TCGA | 2 cut(s) | 276, 1024 |
| TasI | AATT | 8 cut(s) | 283, 516, 552, 656, 936, 999, 1147, 1355 |
| TatI | WGTACW | 1 cut(s) | 1287 |
| TfiI | GAWTC | 4 cut(s) | 343, 647, 730, 1060 |
| Tru1I | TTAA | 3 cut(s) | 203, 482, 882 |
| Tru9I | TTAA | 3 cut(s) | 203, 482, 882 |
| TscAI | CASTG | 2 cut(s) | 495, 703 |
| TseFI | GTSAC | 3 cut(s) | 51, 129, 764 |
| TseI | GCWGC | 1 cut(s) | 887 |
| Tsp45I | GTSAC | 3 cut(s) | 51, 129, 764 |
| TspRI | CASTG | 2 cut(s) | 495, 703 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 302, 407 |
| VpaK11BI | GGWCC | 1 cut(s) | 188 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 951 |
| XapI | RAATTY | 2 cut(s) | 552, 1355 |
| XbaI | TCTAGA | 1 cut(s) | 832 |
| XceI | RCATGY | 1 cut(s) | 1156 |
| XhoI | CTCGAG | 1 cut(s) | 1023 |
| XmnI | GAANNNNTTC | 2 cut(s) | 90, 342 |
| XspI | CTAG | 2 cut(s) | 141, 833 |
| Zsp2I | ATGCAT | 1 cut(s) | 1050 |