RchiOBHm_Chr7g0205081

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000355
Physical Location & Seq
Reverse (-)
22739602 .. 22743352
3751 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18353

Sequence Viewer

Length: 1176 bp
ATGTTTCTCATGGAAAATAGTGAGTGTTTTTCCCATACCAAGTTGCCAGAGTATAAGAGATGTAGAGTCTCTGCTGTTCGTGATTATCCTTTAGGGTGTGGACCATTTGCTCACTTGAGTAATTTGAATGCCAATGCTACGGACAAGAAATATCTTCCTCAATCAGTAGAAGCTGTTCGAGAGTTTCCTCCTTTCTGTGGGATAAATGCTTCTCCTGAGGCCAGGAAATTCGGCCAAGAGAAGTCAGTTAGGGATTACAAGTCATCATCATCAAAGACAGTGAAGACTAATGTGAAACAAACAGGACTTGGGAACAAATTTCAACCTAACACTGAGAAGAAAATTGGAGGAAAGTCTCTAAAGAAGAATCATCATGTACCAGTAAGGGCTGCTTGTCAAGGTACAATTCAACTTGATATAAGGAAGGAGTATTATCAGCGTGATGAAGAAGAACACAATCATGTGATTCCAAAATCATGGAGTACAGATGGGTGCCCTCCTCCTTTTGGTTGTAATAGTTCAAGCCGCAGAAGTCATGATAATGACACAACTGAGAGAAACAAGGTAAAGGAGATATTGCATATGTTCCAAGATGAATGTGTAAAGCTCTTGCTGGAGGAAGAACATAAAAGATCAAAGGGAGGAGGAACTTCTCTCCGAAGGGTTGATTTGGAAGCCTTTAAGATCCTCAAGGATAGAGGAATCTTTGTAAAATCAGGCAAACATGTCATAGGAGATATCCCAGGAGTTGAAGTTGGTGATAAGTTTCAATACCGAGTGGAACTTATCCTTATTGGCCTACATCACCAGATTCAAGGTGGTATAGCTTATGGGAACTTCGGTGGTAAGGTCCTTGCAACCAGTATCGTTGCATCTGGTGGCTATGCAGATGATTTGCATAGTAAGGATTCGTTGATCTATACTGGCCAGGGAGGAAATGCAAAGAATACAAAGGGCCCTCAAGATCAGAAGCTTGAACGGGGAAATCTTGCTTTAAAGAATAGTGTGCAAAAGAACCCTGTCAGAGTGATCCGTGGCTCCGAACTATTGGATGGAAGCAGGACATATGTCTATGATGGACTATATTTGGTAGAGAAATATTGGCAGGAAAGGGGGCCTCTTGGTAAGCTTGTTTTCAAGTTTCAGATGAACAGATTTGGAGGCACTGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

391

Amino Acids

43.76

Weight (kDa)

9.42

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 244 - 388 4.2e-49 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 492
AciI CCGC 1 cut(s) 526
AclWI GGATC 2 cut(s) 679, 1024
AcoI YGGCCR 2 cut(s) 232, 925
AcsI RAATTY 2 cut(s) 227, 317
AfaI GTAC 3 cut(s) 378, 403, 484
AfiI CCNNNNNNNGG 2 cut(s) 197, 506
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 9 cut(s) 127, 323, 410, 522, 752, 770, 815, 977, 1138
AjnI CCWGG 3 cut(s) 221, 742, 927
AluBI AGCT 5 cut(s) 173, 607, 827, 973, 1129
AluI AGCT 5 cut(s) 173, 607, 827, 973, 1129
Alw26I GTCTC 2 cut(s) 73, 360
AlwI GGATC 2 cut(s) 679, 1024
AoxI GGCC 6 cut(s) 219, 232, 796, 925, 955, 1115
ApaI GGGCCC 1 cut(s) 959
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 2 cut(s) 227, 317
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 5 cut(s) 101, 850, 955, 956, 1115
AsuHPI GGTGA 2 cut(s) 770, 797
AvaII GGWCC 2 cut(s) 101, 850
AxyI CCTNAGG 1 cut(s) 216
BaeGI GKGCMC 2 cut(s) 497, 959
BalI TGGCCA 1 cut(s) 927
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 959
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 376
BccI CCATC 3 cut(s) 482, 1046, 1070
BciT130I CCWGG 3 cut(s) 223, 744, 929
BcoDI GTCTC 2 cut(s) 73, 360
BisI GCNGC 2 cut(s) 390, 526
BlsI GCNGC 2 cut(s) 391, 527
Bme1390I CCNGG 3 cut(s) 223, 744, 929
Bme18I GGWCC 2 cut(s) 101, 850
BmgT120I GGNCC 5 cut(s) 101, 850, 955, 956, 1115
BmiI GGNNCC 4 cut(s) 494, 957, 1039, 1116
BmrFI CCNGG 3 cut(s) 223, 744, 929
BmsI GCATC 1 cut(s) 881
BoxI GACNNNNGTC 1 cut(s) 1067
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 635
BpuEI CTTGAG 3 cut(s) 136, 674, 945
BsaJI CCNNGG 3 cut(s) 742, 928, 1033
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 506
Bse1I ACTGG 4 cut(s) 380, 861, 928, 1171
Bse21I CCTNAGG 1 cut(s) 216
BseBI CCWGG 3 cut(s) 223, 744, 929
BseDI CCNNGG 3 cut(s) 742, 928, 1033
BseGI GGATG 1 cut(s) 1057
BseLI CCNNNNNNNGG 2 cut(s) 197, 506
BseMII CTCAG 3 cut(s) 207, 324, 543
BseNI ACTGG 4 cut(s) 380, 861, 928, 1171
BseRI GAGGAG 2 cut(s) 489, 657
BseSI GKGCMC 2 cut(s) 497, 959
BseXI GCAGC 1 cut(s) 376
BshFI GGCC 6 cut(s) 221, 234, 798, 927, 957, 1117
BshNI GGYRCC 1 cut(s) 492
BslI CCNNNNNNNGG 2 cut(s) 197, 506
BsmAI GTCTC 2 cut(s) 73, 360
BsmI GAATGC 1 cut(s) 133
BsnI GGCC 6 cut(s) 221, 234, 798, 927, 957, 1117
Bsp120I GGGCCC 1 cut(s) 955
Bsp1286I GDGCHC 2 cut(s) 497, 959
Bsp143I GATC 5 cut(s) 632, 684, 915, 964, 1029
BspACI CCGC 1 cut(s) 526
BspANI GGCC 6 cut(s) 221, 234, 798, 927, 957, 1117
BspCNI CTCAG 3 cut(s) 208, 325, 544
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 4 cut(s) 494, 957, 1039, 1116
BspPI GGATC 2 cut(s) 679, 1024
BspT107I GGYRCC 1 cut(s) 492
BsrI ACTGG 4 cut(s) 380, 861, 928, 1171
BssECI CCNNGG 3 cut(s) 742, 928, 1033
BssMI GATC 5 cut(s) 632, 684, 915, 964, 1029
Bst2UI CCWGG 3 cut(s) 223, 744, 929
Bst4CI ACNGT 1 cut(s) 280
BstDEI CTNAG 3 cut(s) 216, 333, 552
BstDSI CCRYGG 1 cut(s) 1033
BstF5I GGATG 1 cut(s) 1057
BstKTI GATC 5 cut(s) 635, 687, 918, 967, 1032
BstMAI GTCTC 2 cut(s) 73, 360
BstMBI GATC 5 cut(s) 632, 684, 915, 964, 1029
BstNI CCWGG 3 cut(s) 223, 744, 929
BstNSI RCATGY 1 cut(s) 728
BstPAI GACNNNNGTC 1 cut(s) 1067
BstSCI CCNGG 3 cut(s) 221, 742, 927
BstSLI GKGCMC 2 cut(s) 497, 959
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 684
BstXI CCANNNNNNTGG 1 cut(s) 477
BstYI RGATCY 1 cut(s) 684
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 6 cut(s) 221, 234, 798, 927, 957, 1117
BtgI CCRYGG 1 cut(s) 1033
BtsCI GGATG 1 cut(s) 1057
BtsIMutI CAGTG 3 cut(s) 285, 330, 1164
CciI TCATGA 1 cut(s) 535
Cfr13I GGNCC 5 cut(s) 101, 850, 955, 956, 1115
Csp6I GTAC 3 cut(s) 377, 402, 483
CviAII CATG 6 cut(s) 10, 374, 461, 477, 536, 725
CviQI GTAC 3 cut(s) 377, 402, 483
DdeI CTNAG 3 cut(s) 216, 333, 552
DpnI GATC 5 cut(s) 634, 686, 917, 966, 1031
DpnII GATC 5 cut(s) 632, 684, 915, 964, 1029
DraI TTTAAA 1 cut(s) 996
EaeI YGGCCR 2 cut(s) 232, 925
Eco24I GRGCYC 1 cut(s) 959
Eco32I GATATC 1 cut(s) 739
Eco47I GGWCC 2 cut(s) 101, 850
Eco81I CCTNAGG 1 cut(s) 216
EcoO109I RGGNCCY 4 cut(s) 850, 955, 956, 1115
EcoRII CCWGG 3 cut(s) 221, 742, 927
EcoRV GATATC 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 959
FaeI CATG 6 cut(s) 13, 377, 464, 480, 539, 728
FalI AAGNNNNNCTT 2 cut(s) 376, 408
FatI CATG 6 cut(s) 9, 373, 460, 476, 535, 724
FauNDI CATATG 2 cut(s) 582, 1066
Fnu4HI GCNGC 2 cut(s) 390, 526
FokI GGATG 1 cut(s) 1064
FriOI GRGCYC 1 cut(s) 959
Fsp4HI GCNGC 2 cut(s) 390, 526
GluI GCNGC 2 cut(s) 390, 526
GsuI CTGGAG 1 cut(s) 635
HaeIII GGCC 6 cut(s) 221, 234, 798, 927, 957, 1117
Hin1II CATG 6 cut(s) 13, 377, 464, 480, 539, 728
HindIII AAGCTT 2 cut(s) 971, 1127
HinfI GANTC 6 cut(s) 66, 367, 466, 702, 811, 908
HphI GGTGA 2 cut(s) 770, 797
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 5 cut(s) 659, 969, 1025, 1042, 1146
Hpy188III TCNNGA 5 cut(s) 80, 179, 215, 536, 962
Hpy8I GTNNAC 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 418, 654
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 7 cut(s) 580, 857, 872, 887, 898, 941, 1009
HpyF3I CTNAG 3 cut(s) 216, 333, 552
Hsp92II CATG 6 cut(s) 13, 377, 464, 480, 539, 728
Kzo9I GATC 5 cut(s) 632, 684, 915, 964, 1029
LmnI GCTCC 1 cut(s) 1043
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 881
MalI GATC 5 cut(s) 634, 686, 917, 966, 1031
MboI GATC 5 cut(s) 632, 684, 915, 964, 1029
MboII GAAGA 7 cut(s) 146, 295, 349, 376, 458, 461, 632
MflI RGATCY 1 cut(s) 684
MhlI GDGCHC 2 cut(s) 497, 959
MlsI TGGCCA 1 cut(s) 927
MluCI AATT 5 cut(s) 121, 227, 317, 342, 405
MluNI TGGCCA 1 cut(s) 927
MlyI GAGTC 1 cut(s) 75
Mox20I TGGCCA 1 cut(s) 927
MroXI GAANNNNTTC 1 cut(s) 174
MscI TGGCCA 1 cut(s) 927
MseI TTAA 2 cut(s) 681, 995
MslI CAYNNNNRTG 2 cut(s) 459, 540
Msp20I TGGCCA 1 cut(s) 927
MspR9I CCNGG 3 cut(s) 223, 744, 929
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 3 cut(s) 223, 744, 929
NdeI CATATG 2 cut(s) 582, 1066
NdeII GATC 5 cut(s) 632, 684, 915, 964, 1029
NlaIII CATG 6 cut(s) 13, 377, 464, 480, 539, 728
NlaIV GGNNCC 4 cut(s) 494, 957, 1039, 1116
NspI RCATGY 1 cut(s) 728
PagI TCATGA 1 cut(s) 535
PciI ACATGT 1 cut(s) 724
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 5 cut(s) 367, 466, 702, 811, 908
PkrI GCNGC 2 cut(s) 391, 527
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 850
PscI ACATGT 1 cut(s) 724
PshAI GACNNNNGTC 1 cut(s) 1067
Psp5II RGGWCCY 1 cut(s) 850
Psp6I CCWGG 3 cut(s) 221, 742, 927
PspGI CCWGG 3 cut(s) 221, 742, 927
PspN4I GGNNCC 4 cut(s) 494, 957, 1039, 1116
PspOMI GGGCCC 1 cut(s) 955
PspPI GGNCC 5 cut(s) 101, 850, 955, 956, 1115
PspPPI RGGWCCY 1 cut(s) 850
PsrI GAACNNNNNNTAC 2 cut(s) 159, 191
PsuI RGATCY 1 cut(s) 684
RsaI GTAC 3 cut(s) 378, 403, 484
RsaNI GTAC 3 cut(s) 377, 402, 483
RseI CAYNNNNRTG 2 cut(s) 459, 540
SaqAI TTAA 2 cut(s) 681, 995
SatI GCNGC 2 cut(s) 390, 526
Sau3AI GATC 5 cut(s) 632, 684, 915, 964, 1029
Sau96I GGNCC 5 cut(s) 101, 850, 955, 956, 1115
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 3 cut(s) 223, 744, 929
SduI GDGCHC 2 cut(s) 497, 959
SfaNI GCATC 1 cut(s) 881
SinI GGWCC 2 cut(s) 101, 850
SmiMI CAYNNNNRTG 2 cut(s) 459, 540
SmlI CTYRAG 3 cut(s) 115, 689, 960
SmoI CTYRAG 3 cut(s) 115, 689, 960
Sse9I AATT 5 cut(s) 121, 227, 317, 342, 405
SsiI CCGC 1 cut(s) 526
SspI AATATT 1 cut(s) 1100
StyD4I CCNGG 3 cut(s) 221, 742, 927
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 178
TasI AATT 5 cut(s) 121, 227, 317, 342, 405
TatI WGTACW 1 cut(s) 482
TauI GCSGC 1 cut(s) 528
TfiI GAWTC 5 cut(s) 367, 466, 702, 811, 908
Tru1I TTAA 2 cut(s) 681, 995
Tru9I TTAA 2 cut(s) 681, 995
TscAI CASTG 3 cut(s) 285, 337, 1171
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 3 cut(s) 459, 609, 1163
TspGWI ACGGA 2 cut(s) 155, 1022
TspRI CASTG 3 cut(s) 285, 337, 1171
VpaK11BI GGWCC 2 cut(s) 101, 850
XapI RAATTY 2 cut(s) 227, 317
XceI RCATGY 1 cut(s) 728
XcmI CCANNNNNNNNNTGG 1 cut(s) 815
XmnI GAANNNNTTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.