Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Forward (+)

26620680 .. 26621174

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG283800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGATGGGGGGTGAGATCCCTTAATTCCATTCCTTCAGGAAGTTTTATTTGTGAGTATATAAGAGAGCTCCTTGAAGAGAAGGAAGCTGAAGCAAGAGCTGGTAATGCTGAGTATCTGTTTGATATTGGGAATAACTACAATGATAATTCTCTTTGGGATGGACTTTCGACACTCATGCCTGATGCACAGTCAAGTTCTTATGAAGTTGTGGAGGAAGGTAGCTTCACCATTGATGCTGCGCGGAAAGGCAATTTGGGGAGATTTATCAACCATAGTTGTTCCCCTAATCTTTATGCCCAAAATGTCCTTTATGATCATGAGGACAACAAAATTCCTCACATTATGTTCTTTTCCGCTGAGAACATTCCTCCGTTGCAAGAGTTGACTTATCACTACAATTATATAATGGATCAGGTTCATGATTCCAATGGCAATATAAAGAAGAAGAATTGCTATTGCGGTTCTCCAGAGTGCACTGGCAGGCTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

164

Amino Acids

18.61

Weight (kDa)

4.75

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	2 - 134	6.5e-24	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	244
AciI	CCGC	3 cut(s)	244, 357, 462
AclWI	GGATC	2 cut(s)	12, 420
AcsI	RAATTY	1 cut(s)	333
AcuI	CTGAAG	2 cut(s)	21, 111
AgsI	TTSAA	1 cut(s)	77
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	4 cut(s)	70, 89, 101, 225
AluI	AGCT	4 cut(s)	70, 89, 101, 225
Alw21I	GWGCWC	2 cut(s)	72, 479
Alw44I	GTGCAC	1 cut(s)	475
AlwI	GGATC	2 cut(s)	12, 420
ApaLI	GTGCAC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	25, 220
BaeGI	GKGCMC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	72, 479
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BclI	TGATCA	1 cut(s)	316
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
BmsI	GCATC	2 cut(s)	175, 226
BpmI	CTGGAG	1 cut(s)	453
Bse1I	ACTGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	11, 166
BseMII	CTCAG	2 cut(s)	102, 351
BseNI	ACTGG	1 cut(s)	484
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	244
BsiHKAI	GWGCWC	2 cut(s)	72, 479
Bsp1286I	GDGCHC	2 cut(s)	72, 479
Bsp143I	GATC	3 cut(s)	17, 316, 412
BspACI	CCGC	3 cut(s)	244, 357, 462
BspCNI	CTCAG	2 cut(s)	103, 352
BspFNI	CGCG	1 cut(s)	244
BspHI	TCATGA	2 cut(s)	319, 421
BspPI	GGATC	2 cut(s)	12, 420
BsrI	ACTGG	1 cut(s)	484
BssMI	GATC	3 cut(s)	17, 316, 412
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	111, 360
BstF5I	GGATG	2 cut(s)	11, 166
BstFNI	CGCG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	3 cut(s)	20, 319, 415
BstMBI	GATC	3 cut(s)	17, 316, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	11, 166
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	485
CciI	TCATGA	2 cut(s)	319, 421
CfoI	GCGC	1 cut(s)	244
CviAII	CATG	3 cut(s)	178, 320, 422
CviJI	RGCY	5 cut(s)	70, 89, 101, 225, 487
CviKI_1	RGCY	5 cut(s)	70, 89, 101, 225, 487
DdeI	CTNAG	2 cut(s)	111, 360
DpnI	GATC	3 cut(s)	19, 318, 414
DpnII	GATC	3 cut(s)	17, 316, 412
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	21, 111
EcoICRI	GAGCTC	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	72
FaeI	CATG	3 cut(s)	181, 323, 425
FatI	CATG	3 cut(s)	177, 319, 421
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	2 cut(s)	18, 173
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	240
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	453
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	181, 323, 425
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	1 cut(s)	425
HphI	GGTGA	2 cut(s)	25, 220
Hpy166II	GTNNAC	2 cut(s)	387, 477
Hpy188III	TCNNGA	4 cut(s)	39, 320, 422, 470
Hpy8I	GTNNAC	2 cut(s)	387, 477
HpyAV	CCTTC	3 cut(s)	45, 76, 212
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	188, 379, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	111, 360
Hsp92II	CATG	3 cut(s)	181, 323, 425
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	17, 316, 412
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	7 cut(s)	24, 87, 195, 401, 465, 469, 483
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	2 cut(s)	175, 226
MalI	GATC	3 cut(s)	19, 318, 414
MboI	GATC	3 cut(s)	17, 316, 412
MboII	GAAGA	3 cut(s)	89, 457, 460
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	2 cut(s)	72, 479
MluCI	AATT	6 cut(s)	25, 148, 253, 333, 400, 451
MnlI	CCTC	4 cut(s)	208, 316, 348, 381
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	359
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	3 cut(s)	17, 316, 412
NlaIII	CATG	3 cut(s)	181, 323, 425
PagI	TCATGA	2 cut(s)	319, 421
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	3 cut(s)	17, 316, 412
SduI	GDGCHC	2 cut(s)	72, 479
SetI	ASST	6 cut(s)	72, 91, 103, 223, 227, 420
SfaNI	GCATC	2 cut(s)	175, 226
Sse9I	AATT	6 cut(s)	25, 148, 253, 333, 400, 451
SsiI	CCGC	3 cut(s)	244, 357, 462
SstI	GAGCTC	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	170
TasI	AATT	6 cut(s)	25, 148, 253, 333, 400, 451
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	219, 410
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	484
VneI	GTGCAC	1 cut(s)	475
XapI	RAATTY	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.