histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2340 |
| Acc36I | ACCTGC | 1 cut(s) | 560 |
| AccB1I | GGYRCC | 2 cut(s) | 353, 2547 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1478, 1547 |
| AccI | GTMKAC | 1 cut(s) | 1317 |
| AclWI | GGATC | 7 cut(s) | 646, 1199, 1609, 1873, 2632, 2796, 3204 |
| AcsI | RAATTY | 6 cut(s) | 72, 967, 2004, 2408, 2766, 3117 |
| AcuI | CTGAAG | 7 cut(s) | 198, 1122, 1427, 2178, 2414, 2805, 2895 |
| AfaI | GTAC | 7 cut(s) | 328, 342, 396, 583, 1371, 1624, 2581 |
| AflIII | ACRYGT | 2 cut(s) | 904, 1681 |
| AhlI | ACTAGT | 1 cut(s) | 2525 |
| AjnI | CCWGG | 3 cut(s) | 962, 1540, 1936 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 113, 145, 3023, 3055 |
| AleI | CACNNNNGTG | 1 cut(s) | 1684 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 285, 317, 1104, 1136 |
| Alw21I | GWGCWC | 2 cut(s) | 2856, 3263 |
| Alw26I | GTCTC | 4 cut(s) | 265, 913, 1763, 2033 |
| Alw44I | GTGCAC | 1 cut(s) | 3259 |
| AlwI | GGATC | 7 cut(s) | 646, 1199, 1609, 1873, 2632, 2796, 3204 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 575 |
| AoxI | GGCC | 4 cut(s) | 960, 1990, 2119, 2318 |
| ApaLI | GTGCAC | 1 cut(s) | 3259 |
| ApeKI | GCWGC | 7 cut(s) | 878, 950, 953, 1385, 1633, 1871, 3023 |
| ApoI | RAATTY | 6 cut(s) | 72, 967, 2004, 2408, 2766, 3117 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 832, 1068 |
| AspS9I | GGNCC | 4 cut(s) | 572, 2119, 2318, 2696 |
| AsuC2I | CCSGG | 1 cut(s) | 285 |
| AsuII | TTCGAA | 2 cut(s) | 19, 2514 |
| AvaII | GGWCC | 2 cut(s) | 572, 2696 |
| BaeGI | GKGCMC | 2 cut(s) | 1691, 3263 |
| BanI | GGYRCC | 2 cut(s) | 353, 2547 |
| BanII | GRGCYC | 1 cut(s) | 2856 |
| BauI | CACGAG | 1 cut(s) | 1073 |
| BbsI | GAAGAC | 2 cut(s) | 2, 907 |
| Bbv12I | GWGCWC | 2 cut(s) | 2856, 3263 |
| BbvI | GCAGC | 7 cut(s) | 890, 937, 940, 1372, 1645, 1883, 3010 |
| BceAI | ACGGC | 2 cut(s) | 1130, 1418 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2944, 2978 |
| BciT130I | CCWGG | 3 cut(s) | 964, 1542, 1938 |
| BclI | TGATCA | 2 cut(s) | 589, 3100 |
| BcnI | CCSGG | 1 cut(s) | 285 |
| BcoDI | GTCTC | 4 cut(s) | 265, 913, 1763, 2033 |
| BcuI | ACTAGT | 1 cut(s) | 2525 |
| BfaI | CTAG | 4 cut(s) | 144, 737, 2262, 2526 |
| BfmI | CTRYAG | 1 cut(s) | 876 |
| BfuAI | ACCTGC | 1 cut(s) | 560 |
| BlpI | GCTNAGC | 1 cut(s) | 2673 |
| Bme1390I | CCNGG | 4 cut(s) | 285, 964, 1542, 1938 |
| Bme18I | GGWCC | 2 cut(s) | 572, 2696 |
| BmgT120I | GGNCC | 4 cut(s) | 572, 2119, 2318, 2696 |
| BmiI | GGNNCC | 7 cut(s) | 355, 474, 810, 2154, 2319, 2549, 3250 |
| BmrFI | CCNGG | 4 cut(s) | 285, 964, 1542, 1938 |
| BmrI | ACTGGG | 3 cut(s) | 101, 225, 1382 |
| BmsI | GCATC | 9 cut(s) | 164, 541, 1244, 1397, 2074, 2075, 2579, 2959, 3010 |
| BmuI | ACTGGG | 3 cut(s) | 101, 225, 1382 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2270 |
| BpiI | GAAGAC | 2 cut(s) | 2, 907 |
| BpmI | CTGGAG | 1 cut(s) | 1131 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2673 |
| Bpu14I | TTCGAA | 2 cut(s) | 19, 2514 |
| BpuEI | CTTGAG | 3 cut(s) | 1224, 1868, 2962 |
| BpuMI | CCSGG | 1 cut(s) | 285 |
| BsaAI | YACGTR | 2 cut(s) | 1903, 2420 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2898 |
| BsaJI | CCNNGG | 6 cut(s) | 1258, 1400, 1540, 1618, 2122, 2565 |
| Bse1I | ACTGG | 9 cut(s) | 96, 231, 357, 476, 1114, 1377, 2055, 2740, 3268 |
| Bse3DI | GCAATG | 5 cut(s) | 318, 1255, 1726, 1772, 3158 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2898 |
| BseBI | CCWGG | 3 cut(s) | 964, 1542, 1938 |
| BseDI | CCNNGG | 6 cut(s) | 1258, 1400, 1540, 1618, 2122, 2565 |
| BseJI | GATNNNNATC | 1 cut(s) | 2898 |
| BseMI | GCAATG | 5 cut(s) | 318, 1255, 1726, 1772, 3158 |
| BseMII | CTCAG | 7 cut(s) | 347, 401, 588, 672, 924, 2592, 3135 |
| BseNI | ACTGG | 9 cut(s) | 96, 231, 357, 476, 1114, 1377, 2055, 2740, 3268 |
| BseRI | GAGGAG | 3 cut(s) | 885, 1227, 1683 |
| BseSI | GKGCMC | 2 cut(s) | 1691, 3263 |
| BseXI | GCAGC | 7 cut(s) | 890, 937, 940, 1372, 1645, 1883, 3010 |
| BseYI | CCCAGC | 1 cut(s) | 416 |
| BsgI | GTGCAG | 2 cut(s) | 2637, 3009 |
| BshFI | GGCC | 4 cut(s) | 962, 1992, 2121, 2320 |
| BshNI | GGYRCC | 2 cut(s) | 353, 2547 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2856, 3263 |
| BsiSI | CCGG | 1 cut(s) | 284 |
| BslFI | GGGAC | 3 cut(s) | 935, 1152, 1276 |
| BsmAI | GTCTC | 4 cut(s) | 265, 913, 1763, 2033 |
| BsmFI | GGGAC | 3 cut(s) | 935, 1152, 1276 |
| BsmI | GAATGC | 2 cut(s) | 952, 1565 |
| BsnI | GGCC | 4 cut(s) | 962, 1992, 2121, 2320 |
| Bsp119I | TTCGAA | 2 cut(s) | 19, 2514 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1691, 2856, 3263 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2673 |
| BspANI | GGCC | 4 cut(s) | 962, 1992, 2121, 2320 |
| BspCNI | CTCAG | 7 cut(s) | 346, 400, 589, 671, 923, 2593, 3136 |
| BspHI | TCATGA | 2 cut(s) | 3103, 3205 |
| BspLI | GGNNCC | 7 cut(s) | 355, 474, 810, 2154, 2319, 2549, 3250 |
| BspMAI | CTGCAG | 1 cut(s) | 880 |
| BspMI | ACCTGC | 1 cut(s) | 560 |
| BspPI | GGATC | 7 cut(s) | 646, 1199, 1609, 1873, 2632, 2796, 3204 |
| BspQI | GCTCTTC | 1 cut(s) | 972 |
| BspT104I | TTCGAA | 2 cut(s) | 19, 2514 |
| BspT107I | GGYRCC | 2 cut(s) | 353, 2547 |
| BsrDI | GCAATG | 5 cut(s) | 318, 1255, 1726, 1772, 3158 |
| BsrI | ACTGG | 9 cut(s) | 96, 231, 357, 476, 1114, 1377, 2055, 2740, 3268 |
| BssECI | CCNNGG | 6 cut(s) | 1258, 1400, 1540, 1618, 2122, 2565 |
| BssNAI | GTATAC | 1 cut(s) | 1318 |
| BssSI | CACGAG | 1 cut(s) | 1073 |
| BssT1I | CCWWGG | 4 cut(s) | 1258, 1618, 2122, 2565 |
| Bst1107I | GTATAC | 1 cut(s) | 1318 |
| Bst2BI | CACGAG | 1 cut(s) | 1073 |
| Bst2UI | CCWGG | 3 cut(s) | 964, 1542, 1938 |
| Bst4CI | ACNGT | 3 cut(s) | 151, 721, 1334 |
| Bst6I | CTCTTC | 4 cut(s) | 795, 838, 972, 2856 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1254 |
| BstBAI | YACGTR | 2 cut(s) | 1903, 2420 |
| BstBI | TTCGAA | 2 cut(s) | 19, 2514 |
| BstC8I | GCNNGC | 4 cut(s) | 1631, 2379, 2555, 3269 |
| BstDSI | CCRYGG | 1 cut(s) | 1400 |
| BstMAI | GTCTC | 4 cut(s) | 265, 913, 1763, 2033 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 707, 959, 1254, 1848, 1998 |
| BstNI | CCWGG | 3 cut(s) | 964, 1542, 1938 |
| BstNSI | RCATGY | 3 cut(s) | 908, 1145, 1685 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2270 |
| BstSCI | CCNGG | 4 cut(s) | 283, 962, 1540, 1936 |
| BstSFI | CTRYAG | 1 cut(s) | 876 |
| BstSLI | GKGCMC | 2 cut(s) | 1691, 3263 |
| BstSNI | TACGTA | 1 cut(s) | 1903 |
| BstV1I | GCAGC | 7 cut(s) | 890, 937, 940, 1372, 1645, 1883, 3010 |
| BstV2I | GAAGAC | 2 cut(s) | 2, 907 |
| BstX2I | RGATCY | 4 cut(s) | 1601, 1878, 2637, 2801 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 364 |
| BstYI | RGATCY | 4 cut(s) | 1601, 1878, 2637, 2801 |
| BstZ17I | GTATAC | 1 cut(s) | 1318 |
| BsuRI | GGCC | 4 cut(s) | 962, 1992, 2121, 2320 |
| BtgI | CCRYGG | 1 cut(s) | 1400 |
| BtgZI | GCGATG | 1 cut(s) | 141 |
| BtsIMutI | CAGTG | 3 cut(s) | 364, 1227, 3261 |
| BveI | ACCTGC | 1 cut(s) | 560 |
| Cac8I | GCNNGC | 4 cut(s) | 1631, 2379, 2555, 3269 |
| CaiI | CAGNNNCTG | 1 cut(s) | 575 |
| CciI | TCATGA | 2 cut(s) | 3103, 3205 |
| Cfr13I | GGNCC | 4 cut(s) | 572, 2119, 2318, 2696 |
| Csp6I | GTAC | 7 cut(s) | 327, 341, 395, 582, 1370, 1623, 2580 |
| CviQI | GTAC | 7 cut(s) | 327, 341, 395, 582, 1370, 1623, 2580 |
| DraI | TTTAAA | 2 cut(s) | 1585, 2773 |
| Eam1104I | CTCTTC | 4 cut(s) | 795, 838, 972, 2856 |
| EarI | CTCTTC | 4 cut(s) | 795, 838, 972, 2856 |
| EciI | GGCGGA | 1 cut(s) | 270 |
| Ecl136II | GAGCTC | 1 cut(s) | 2854 |
| Eco105I | TACGTA | 1 cut(s) | 1903 |
| Eco130I | CCWWGG | 4 cut(s) | 1258, 1618, 2122, 2565 |
| Eco24I | GRGCYC | 1 cut(s) | 2856 |
| Eco32I | GATATC | 1 cut(s) | 890 |
| Eco47I | GGWCC | 2 cut(s) | 572, 2696 |
| Eco53kI | GAGCTC | 1 cut(s) | 2854 |
| Eco57I | CTGAAG | 7 cut(s) | 198, 1122, 1427, 2178, 2414, 2805, 2895 |
| EcoICRI | GAGCTC | 1 cut(s) | 2854 |
| EcoO109I | RGGNCCY | 2 cut(s) | 572, 2318 |
| EcoRI | GAATTC | 1 cut(s) | 3117 |
| EcoRII | CCWGG | 3 cut(s) | 962, 1540, 1936 |
| EcoRV | GATATC | 1 cut(s) | 890 |
| EcoT14I | CCWWGG | 4 cut(s) | 1258, 1618, 2122, 2565 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 1178 |
| EcoT38I | GRGCYC | 1 cut(s) | 2856 |
| ErhI | CCWWGG | 4 cut(s) | 1258, 1618, 2122, 2565 |
| FaqI | GGGAC | 3 cut(s) | 935, 1152, 1276 |
| FauI | CCCGC | 5 cut(s) | 132, 513, 605, 1856, 2562 |
| FauNDI | CATATG | 1 cut(s) | 2269 |
| FbaI | TGATCA | 2 cut(s) | 589, 3100 |
| FblI | GTMKAC | 1 cut(s) | 1317 |
| FriOI | GRGCYC | 1 cut(s) | 2856 |
| FspBI | CTAG | 4 cut(s) | 144, 737, 2262, 2526 |
| GsaI | CCCAGC | 1 cut(s) | 420 |
| GsuI | CTGGAG | 1 cut(s) | 1131 |
| HaeIII | GGCC | 4 cut(s) | 962, 1992, 2121, 2320 |
| HapII | CCGG | 1 cut(s) | 284 |
| HincII | GTYRAC | 2 cut(s) | 2369, 3171 |
| HindII | GTYRAC | 2 cut(s) | 2369, 3171 |
| HindIII | AAGCTT | 2 cut(s) | 369, 2168 |
| HpaII | CCGG | 1 cut(s) | 284 |
| Hpy166II | GTNNAC | 6 cut(s) | 395, 646, 1318, 2369, 3171, 3261 |
| Hpy8I | GTNNAC | 6 cut(s) | 395, 646, 1318, 2369, 3171, 3261 |
| HpyCH4III | ACNGT | 3 cut(s) | 151, 721, 1334 |
| HpyCH4IV | ACGT | 2 cut(s) | 1902, 2419 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 707, 959, 1254, 1848, 1998 |
| HpySE526I | ACGT | 2 cut(s) | 1902, 2419 |
| Ksp22I | TGATCA | 2 cut(s) | 589, 3100 |
| LguI | GCTCTTC | 1 cut(s) | 972 |
| LmnI | GCTCC | 3 cut(s) | 472, 1928, 2859 |
| Lsp1109I | GCAGC | 7 cut(s) | 890, 937, 940, 1372, 1645, 1883, 3010 |
| LweI | GCATC | 9 cut(s) | 164, 541, 1244, 1397, 2074, 2075, 2579, 2959, 3010 |
| MaeI | CTAG | 4 cut(s) | 144, 737, 2262, 2526 |
| MaeII | ACGT | 2 cut(s) | 1902, 2419 |
| MaeIII | GTNAC | 5 cut(s) | 455, 784, 995, 1105, 1747 |
| MfeI | CAATTG | 2 cut(s) | 555, 1743 |
| MflI | RGATCY | 4 cut(s) | 1601, 1878, 2637, 2801 |
| MhlI | GDGCHC | 3 cut(s) | 1691, 2856, 3263 |
| MlyI | GAGTC | 4 cut(s) | 128, 1601, 2468, 2591 |
| MmeI | TCCRAC | 1 cut(s) | 966 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 1178 |
| MroXI | GAANNNNTTC | 2 cut(s) | 832, 1068 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1028, 1077, 1684 |
| MspA1I | CMGCKG | 4 cut(s) | 662, 914, 2350, 3143 |
| MspI | CCGG | 1 cut(s) | 284 |
| MspR9I | CCNGG | 4 cut(s) | 285, 964, 1542, 1938 |
| MunI | CAATTG | 2 cut(s) | 555, 1743 |
| Mva1269I | GAATGC | 2 cut(s) | 952, 1565 |
| MvaI | CCWGG | 3 cut(s) | 964, 1542, 1938 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 707, 959, 1254, 1848, 1998 |
| NciI | CCSGG | 1 cut(s) | 285 |
| NdeI | CATATG | 1 cut(s) | 2269 |
| NlaIV | GGNNCC | 7 cut(s) | 355, 474, 810, 2154, 2319, 2549, 3250 |
| NmuCI | GTSAC | 4 cut(s) | 455, 784, 995, 1747 |
| NsiI | ATGCAT | 2 cut(s) | 6, 1178 |
| NspI | RCATGY | 3 cut(s) | 908, 1145, 1685 |
| NspV | TTCGAA | 2 cut(s) | 19, 2514 |
| OliI | CACNNNNGTG | 1 cut(s) | 1684 |
| PagI | TCATGA | 2 cut(s) | 3103, 3205 |
| PciI | ACATGT | 2 cut(s) | 904, 1681 |
| PciSI | GCTCTTC | 1 cut(s) | 972 |
| PctI | GAATGC | 2 cut(s) | 952, 1565 |
| PdmI | GAANNNNTTC | 2 cut(s) | 832, 1068 |
| PfeI | GAWTC | 7 cut(s) | 526, 680, 1660, 2215, 2230, 2243, 3209 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1478, 1547 |
| PfoI | TCCNGGA | 1 cut(s) | 1936 |
| PleI | GAGTC | 4 cut(s) | 128, 1600, 2467, 2591 |
| PpsI | GAGTC | 4 cut(s) | 128, 1600, 2467, 2591 |
| Ppu21I | YACGTR | 2 cut(s) | 1903, 2420 |
| PpuMI | RGGWCCY | 1 cut(s) | 572 |
| PscI | ACATGT | 2 cut(s) | 904, 1681 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2270 |
| PsiI | TTATAA | 1 cut(s) | 2340 |
| Psp124BI | GAGCTC | 1 cut(s) | 2856 |
| Psp5II | RGGWCCY | 1 cut(s) | 572 |
| Psp6I | CCWGG | 3 cut(s) | 962, 1540, 1936 |
| PspFI | CCCAGC | 1 cut(s) | 416 |
| PspGI | CCWGG | 3 cut(s) | 962, 1540, 1936 |
| PspN4I | GGNNCC | 7 cut(s) | 355, 474, 810, 2154, 2319, 2549, 3250 |
| PspPI | GGNCC | 4 cut(s) | 572, 2119, 2318, 2696 |
| PspPPI | RGGWCCY | 1 cut(s) | 572 |
| PstI | CTGCAG | 1 cut(s) | 880 |
| PstNI | CAGNNNCTG | 1 cut(s) | 575 |
| PsuI | RGATCY | 4 cut(s) | 1601, 1878, 2637, 2801 |
| PvuII | CAGCTG | 3 cut(s) | 662, 914, 2350 |
| RsaI | GTAC | 7 cut(s) | 328, 342, 396, 583, 1371, 1624, 2581 |
| RsaNI | GTAC | 7 cut(s) | 327, 341, 395, 582, 1370, 1623, 2580 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1028, 1077, 1684 |
| SacI | GAGCTC | 1 cut(s) | 2856 |
| SapI | GCTCTTC | 1 cut(s) | 972 |
| Sau96I | GGNCC | 4 cut(s) | 572, 2119, 2318, 2696 |
| SchI | GAGTC | 4 cut(s) | 128, 1601, 2468, 2591 |
| ScrFI | CCNGG | 4 cut(s) | 285, 964, 1542, 1938 |
| SduI | GDGCHC | 3 cut(s) | 1691, 2856, 3263 |
| SfaNI | GCATC | 9 cut(s) | 164, 541, 1244, 1397, 2074, 2075, 2579, 2959, 3010 |
| SfcI | CTRYAG | 1 cut(s) | 876 |
| SfuI | TTCGAA | 2 cut(s) | 19, 2514 |
| SinI | GGWCC | 2 cut(s) | 572, 2696 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1028, 1077, 1684 |
| SmlI | CTYRAG | 3 cut(s) | 1239, 1883, 2977 |
| SmoI | CTYRAG | 3 cut(s) | 1239, 1883, 2977 |
| SnaBI | TACGTA | 1 cut(s) | 1903 |
| SpeI | ACTAGT | 1 cut(s) | 2525 |
| SspMI | CTAG | 4 cut(s) | 144, 737, 2262, 2526 |
| SstI | GAGCTC | 1 cut(s) | 2856 |
| StyD4I | CCNGG | 4 cut(s) | 283, 962, 1540, 1936 |
| StyI | CCWWGG | 4 cut(s) | 1258, 1618, 2122, 2565 |
| TaaI | ACNGT | 3 cut(s) | 151, 721, 1334 |
| TaiI | ACGT | 2 cut(s) | 1905, 2422 |
| TaqI | TCGA | 8 cut(s) | 19, 39, 898, 1336, 1422, 2436, 2514, 2954 |
| TatI | WGTACW | 2 cut(s) | 1369, 2579 |
| TauI | GCSGC | 3 cut(s) | 1780, 2553, 3143 |
| TfiI | GAWTC | 7 cut(s) | 526, 680, 1660, 2215, 2230, 2243, 3209 |
| TscAI | CASTG | 3 cut(s) | 364, 1234, 3268 |
| TseFI | GTSAC | 4 cut(s) | 455, 784, 995, 1747 |
| TseI | GCWGC | 7 cut(s) | 878, 950, 953, 1385, 1633, 1871, 3023 |
| Tsp45I | GTSAC | 4 cut(s) | 455, 784, 995, 1747 |
| TspGWI | ACGGA | 2 cut(s) | 1513, 3043 |
| TspRI | CASTG | 3 cut(s) | 364, 1234, 3268 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1478, 1547 |
| VneI | GTGCAC | 1 cut(s) | 3259 |
| VpaK11BI | GGWCC | 2 cut(s) | 572, 2696 |
| XapI | RAATTY | 6 cut(s) | 72, 967, 2004, 2408, 2766, 3117 |
| XceI | RCATGY | 3 cut(s) | 908, 1145, 1685 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2009, 2379 |
| XmiI | GTMKAC | 1 cut(s) | 1317 |
| XmnI | GAANNNNTTC | 2 cut(s) | 832, 1068 |
| XspI | CTAG | 4 cut(s) | 144, 737, 2262, 2526 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 1178 |