Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Reverse (-)

12265129 .. 12266323

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0155000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTGAGAAGACCCACCAAGCGTACCCTACAGCCCCAGCAAACGGTTATGCAAGAAGCGATGGAGAGTCTTTGGTATCCGAAGATGAGCTCAAGCGCAAGAAGAGAATCAAATTGTTTACCTACATTGGTATTTTCATTGTGTTTCAGATCATAGTGATGACCGTGTTTGGTCTTACTGTGATGAAGGTTAAAACTCCAAAGGCCAGATGGGGAGACATTAGTGTTGAAACCCTCAACTCTGTTCCTGCAACACCTTCTTTTGATACAACCTTTGAAGCCCAGATAAGGATCAAGAACACAAACTGGGGTCCTTACAAATTCAATGCAGGCACTGCCACATTTTTGTACCAAGGCACAACTATTGGGCAAGTTGTTATTCCAAAAGGCAAGGCTGGCATGCGTTCCACCAAGAAAATCGATGTTGAGGTGAGTTTGAATACTAATGCATTGCCAAACAGTTCCAATCTTGGAAGTGAATTGAGTAGCGGGGTGTTGACGCTTACCAGCCAAGTTCAATTGAAAGGAAAAGTTGAGTTGATGCTTATAATGAAGAAAAATAAGAATGCCTCTATGGACTGCACAATAGCATTTGATTTGTCATCCAAGACAGTCAAAACCCTACAGTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

211

Amino Acids

23.17

Weight (kDa)

9.72

Isoelectric Point (pI)

26.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	96 - 195	7.9e-08	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	548
AciI	CCGC	1 cut(s)	489
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	320
AfaI	GTAC	2 cut(s)	26, 350
AfiI	CCNNNNNNNGG	2 cut(s)	44, 288
AgsI	TTSAA	6 cut(s)	230, 278, 325, 439, 518, 523
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	299
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	2 cut(s)	56, 204
BciVI	GTATCC	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	210
BfmI	CTRYAG	2 cut(s)	30, 623
BfuI	GTATCC	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	312
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 288
Bse1I	ACTGG	1 cut(s)	311
Bse3DI	GCAATG	1 cut(s)	449
Bse8I	GATNNNNATC	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	1 cut(s)	602
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	2 cut(s)	44, 288
BseMI	GCAATG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	311
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	44, 288
BsmAI	GTCTC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	150, 291
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	1 cut(s)	206
BspDI	ATCGAT	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	150, 291
BssT1I	CCWWGG	1 cut(s)	352
Bst4CI	ACNGT	6 cut(s)	47, 166, 181, 461, 613, 627
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	3 cut(s)	331, 397, 401
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	602
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	153, 294
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	150, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 396
BstNSI	RCATGY	1 cut(s)	403
BstSFI	CTRYAG	2 cut(s)	30, 623
BstV2I	GAAGAC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	420
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	602
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	333, 632
Cac8I	GCNNGC	3 cut(s)	331, 397, 401
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	311
ClaI	ATCGAT	1 cut(s)	420
CseI	GACGC	1 cut(s)	508
Csp6I	GTAC	2 cut(s)	25, 349
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	7 cut(s)	5, 35, 91, 206, 281, 395, 510
CviKI_1	RGCY	7 cut(s)	5, 35, 91, 206, 281, 395, 510
CviQI	GTAC	2 cut(s)	25, 349
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	152, 293
DpnII	GATC	2 cut(s)	150, 291
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	403
FaiI	YATR	5 cut(s)	51, 155, 401, 548, 575
FatI	CATG	1 cut(s)	399
FauI	CCCGC	1 cut(s)	482
FokI	GGATG	1 cut(s)	589
FriOI	GRGCYC	1 cut(s)	93
GlaI	GCGC	1 cut(s)	98
GsaI	CCCAGC	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	206
HgaI	GACGC	1 cut(s)	508
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	2 cut(s)	68, 108
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	2 cut(s)	120, 498
Hpy188I	TCNGA	2 cut(s)	82, 150
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	2 cut(s)	120, 498
HpyAV	CCTTC	2 cut(s)	181, 267
HpyCH4III	ACNGT	6 cut(s)	47, 166, 181, 461, 613, 627
HpyCH4V	TGCA	6 cut(s)	53, 251, 329, 449, 582, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 396
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	150, 291
LpnPI	CCDG	8 cut(s)	51, 220, 261, 292, 296, 315, 381, 520
LweI	GCATC	1 cut(s)	531
MalI	GATC	2 cut(s)	152, 293
MboI	GATC	2 cut(s)	150, 291
MboII	GAAGA	4 cut(s)	22, 95, 115, 565
MfeI	CAATTG	1 cut(s)	518
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	4 cut(s)	113, 320, 479, 518
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	245, 421, 580
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	518
Mva1269I	GAATGC	1 cut(s)	571
MwoI	GCNNNNNNNGC	2 cut(s)	335, 396
NdeII	GATC	2 cut(s)	150, 291
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	1 cut(s)	312
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	403
PaeI	GCATGC	1 cut(s)	403
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	311
PsiI	TTATAA	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	93
Psp5II	RGGWCCY	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	311
PspPPI	RGGWCCY	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	335
RsaI	GTAC	2 cut(s)	26, 350
RsaNI	GTAC	2 cut(s)	25, 349
RseI	CAYNNNNRTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	150, 291
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	6 cut(s)	93, 125, 192, 259, 275, 432
SfaNI	GCATC	1 cut(s)	531
SfcI	CTRYAG	2 cut(s)	30, 623
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SphI	GCATGC	1 cut(s)	403
Sse9I	AATT	4 cut(s)	113, 320, 479, 518
SsiI	CCGC	1 cut(s)	489
SstI	GAGCTC	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	6 cut(s)	47, 166, 181, 461, 613, 627
TaqI	TCGA	1 cut(s)	420
TasI	AATT	4 cut(s)	113, 320, 479, 518
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	2 cut(s)	340, 632
TspDTI	ATGAA	3 cut(s)	127, 200, 566
TspRI	CASTG	2 cut(s)	340, 632
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	1 cut(s)	320
XceI	RCATGY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.