RLG00000003403

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000355
Physical Location & Seq
Forward (+)
48078777 .. 48080601
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003403

Sequence Viewer

Length: 951 bp
ATGGTAATTGTTGAATCTAACAATGGTCTCTTTGTGGAGCAGGTATCAACATCCGTCACCATTTCTGACGACCTTCCATCAAGAAAAATCATTGCTTCTGTCAAACTCCCTGATTACAAATCTGGCAAGAAGCTGTTCGGGATTTTCCTCCTTTCGATCTGTGGGATAAATGCTTCTCCTGAGGCCAAGAAATTCGGCCAAGAGAAGTCAGTTAGGGATTACAAGTCGTCATCATCAAAGACAGTGAAGACTAATGTGAAACAAACAGGACTTGGGAACAAATTTCAACCTAACACTGAGAAGAAAATTGGAGGAAAGTCTCTAAAGAAGAATCATCATGTACCAGTAAGGGCTGCTTGTCAAGATGGGTGCCCTCCTCCTGTTGGTTGTAGTAGTTCAAGCCGCATAAGTCATGATAATGACACAACTGAGAGAAACAAGGTAAAGGAGATATTGCATATGTTCCAAGATGAATGTGAAAAGCTCTTGCTGGAGGAAGAACATAAAAGATCAAAGGGAGGAGGAACTTTTCTCCGAAGGGTTGATTTGGAAGCCTTTAAGATCCTCAAGGATAGAGGAATCTTTATTCAAGGTGGTATAGCTTATGGGAACTTTGGTGGTAAGGTCCTTGCAACTAGTATCGTTGCATCTGGTGGCTATGCAGATGATTTGCATAGTAAGGATTCGTTGATCTATACTGGCCAGGGAGGAAATGCAAAGAATACAAAGGGCCCTCAAGATCAGAAGCTTGAACGGGGAAATCTTGCTTTAAAGAATAGTGTGCAAAAGAACCCTGTCAGAGTGATCCGTGGCTCCGAACTATTGGATGGAAGTAGGACATATGTCTATGATGGACTATATTTGGTAGAGAAATATTGGCAAGAAAGAGGGCCTCTTGGTAAGCTTGTTTTCAAGTTTCAGATGAACAGAATTGGAGGCACTGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

317

Amino Acids

34.7

Weight (kDa)

9.61

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 196 - 313 1.3e-36 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 369
AciI CCGC 1 cut(s) 403
AclWI GGATC 2 cut(s) 556, 799
AcoI YGGCCR 2 cut(s) 196, 700
AcsI RAATTY 2 cut(s) 191, 281
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 6 cut(s) 14, 287, 399, 590, 752, 913
AhlI ACTAGT 1 cut(s) 635
AjnI CCWGG 1 cut(s) 702
AluBI AGCT 5 cut(s) 133, 484, 602, 748, 904
AluI AGCT 5 cut(s) 133, 484, 602, 748, 904
Alw26I GTCTC 2 cut(s) 32, 324
AlwI GGATC 2 cut(s) 556, 799
AoxI GGCC 5 cut(s) 183, 196, 700, 730, 890
ApaI GGGCCC 1 cut(s) 734
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 2 cut(s) 191, 281
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 4 cut(s) 625, 730, 731, 890
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 1 cut(s) 625
AxyI CCTNAGG 1 cut(s) 180
BaeGI GKGCMC 2 cut(s) 374, 734
BalI TGGCCA 1 cut(s) 702
BanI GGYRCC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 734
BbsI GAAGAC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 340
BccI CCATC 4 cut(s) 85, 359, 821, 845
BciT130I CCWGG 1 cut(s) 704
BcoDI GTCTC 2 cut(s) 32, 324
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 1 cut(s) 636
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 2 cut(s) 354, 403
BlsI GCNGC 2 cut(s) 355, 404
Bme1390I CCNGG 1 cut(s) 704
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 4 cut(s) 625, 730, 731, 890
BmiI GGNNCC 3 cut(s) 371, 732, 814
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 1 cut(s) 656
BoxI GACNNNNGTC 1 cut(s) 842
BpiI GAAGAC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 512
BpuEI CTTGAG 2 cut(s) 551, 720
BsaI GGTCTC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 703, 808
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 3 cut(s) 344, 703, 946
Bse21I CCTNAGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 2 cut(s) 703, 808
BseGI GGATG 2 cut(s) 50, 832
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 3 cut(s) 171, 288, 420
BseNI ACTGG 3 cut(s) 344, 703, 946
BseRI GAGGAG 2 cut(s) 366, 534
BseSI GKGCMC 2 cut(s) 374, 734
BseXI GCAGC 1 cut(s) 340
BshFI GGCC 5 cut(s) 185, 198, 702, 732, 892
BshNI GGYRCC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 2 cut(s) 32, 324
BsnI GGCC 5 cut(s) 185, 198, 702, 732, 892
Bso31I GGTCTC 1 cut(s) 32
Bsp120I GGGCCC 1 cut(s) 730
Bsp1286I GDGCHC 2 cut(s) 374, 734
Bsp143I GATC 6 cut(s) 156, 509, 561, 690, 739, 804
BspACI CCGC 1 cut(s) 403
BspANI GGCC 5 cut(s) 185, 198, 702, 732, 892
BspCNI CTCAG 3 cut(s) 172, 289, 421
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 3 cut(s) 371, 732, 814
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 2 cut(s) 556, 799
BspT107I GGYRCC 1 cut(s) 369
BspTNI GGTCTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 90
BsrI ACTGG 3 cut(s) 344, 703, 946
BssECI CCNNGG 2 cut(s) 703, 808
BssMI GATC 6 cut(s) 156, 509, 561, 690, 739, 804
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 1 cut(s) 244
BstDEI CTNAG 3 cut(s) 180, 297, 429
BstDSI CCRYGG 1 cut(s) 808
BstF5I GGATG 2 cut(s) 50, 832
BstKTI GATC 6 cut(s) 159, 512, 564, 693, 742, 807
BstMAI GTCTC 2 cut(s) 32, 324
BstMBI GATC 6 cut(s) 156, 509, 561, 690, 739, 804
BstNI CCWGG 1 cut(s) 704
BstPAI GACNNNNGTC 1 cut(s) 842
BstSCI CCNGG 1 cut(s) 702
BstSLI GKGCMC 2 cut(s) 374, 734
BstV1I GCAGC 1 cut(s) 340
BstV2I GAAGAC 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 561
BstYI RGATCY 1 cut(s) 561
Bsu36I CCTNAGG 1 cut(s) 180
BsuRI GGCC 5 cut(s) 185, 198, 702, 732, 892
BtgI CCRYGG 1 cut(s) 808
BtsCI GGATG 2 cut(s) 50, 832
BtsIMutI CAGTG 3 cut(s) 249, 294, 939
BveI ACCTGC 1 cut(s) 31
CciI TCATGA 1 cut(s) 412
Cfr13I GGNCC 4 cut(s) 625, 730, 731, 890
Csp6I GTAC 1 cut(s) 341
CviAII CATG 2 cut(s) 338, 413
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 3 cut(s) 180, 297, 429
DpnI GATC 6 cut(s) 158, 511, 563, 692, 741, 806
DpnII GATC 6 cut(s) 156, 509, 561, 690, 739, 804
DraI TTTAAA 1 cut(s) 771
EaeI YGGCCR 2 cut(s) 196, 700
Eco24I GRGCYC 1 cut(s) 734
Eco31I GGTCTC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 625
Eco81I CCTNAGG 1 cut(s) 180
EcoO109I RGGNCCY 4 cut(s) 625, 730, 731, 890
EcoRII CCWGG 1 cut(s) 702
EcoT38I GRGCYC 1 cut(s) 734
FaeI CATG 2 cut(s) 341, 416
FalI AAGNNNNNCTT 2 cut(s) 340, 372
FatI CATG 2 cut(s) 337, 412
FauNDI CATATG 2 cut(s) 459, 841
Fnu4HI GCNGC 2 cut(s) 354, 403
FokI GGATG 2 cut(s) 37, 839
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 2 cut(s) 354, 403
FspBI CTAG 1 cut(s) 636
GluI GCNGC 2 cut(s) 354, 403
GsuI CTGGAG 1 cut(s) 512
HaeIII GGCC 5 cut(s) 185, 198, 702, 732, 892
Hin1II CATG 2 cut(s) 341, 416
HindIII AAGCTT 2 cut(s) 746, 902
HinfI GANTC 4 cut(s) 14, 331, 579, 683
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 6 cut(s) 67, 536, 744, 800, 817, 921
Hpy188III TCNNGA 6 cut(s) 81, 139, 179, 362, 413, 737
HpyAV CCTTC 2 cut(s) 83, 531
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4V TGCA 7 cut(s) 457, 632, 647, 662, 673, 716, 784
HpyF3I CTNAG 3 cut(s) 180, 297, 429
Hsp92II CATG 2 cut(s) 341, 416
Kzo9I GATC 6 cut(s) 156, 509, 561, 690, 739, 804
LmnI GCTCC 2 cut(s) 37, 818
Lsp1109I GCAGC 1 cut(s) 340
LweI GCATC 1 cut(s) 656
MaeI CTAG 1 cut(s) 636
MaeIII GTNAC 1 cut(s) 55
MalI GATC 6 cut(s) 158, 511, 563, 692, 741, 806
MboI GATC 6 cut(s) 156, 509, 561, 690, 739, 804
MboII GAAGA 4 cut(s) 259, 313, 340, 509
MflI RGATCY 1 cut(s) 561
MhlI GDGCHC 2 cut(s) 374, 734
MlsI TGGCCA 1 cut(s) 702
MluCI AATT 5 cut(s) 6, 191, 281, 306, 930
MluNI TGGCCA 1 cut(s) 702
Mox20I TGGCCA 1 cut(s) 702
MroXI GAANNNNTTC 1 cut(s) 134
MscI TGGCCA 1 cut(s) 702
MseI TTAA 2 cut(s) 558, 770
MslI CAYNNNNRTG 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 702
MspR9I CCNGG 1 cut(s) 704
MvaI CCWGG 1 cut(s) 704
NdeI CATATG 2 cut(s) 459, 841
NdeII GATC 6 cut(s) 156, 509, 561, 690, 739, 804
NlaIII CATG 2 cut(s) 341, 416
NlaIV GGNNCC 3 cut(s) 371, 732, 814
NmuCI GTSAC 1 cut(s) 55
PagI TCATGA 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 4 cut(s) 14, 331, 579, 683
PkrI GCNGC 2 cut(s) 355, 404
PpuMI RGGWCCY 1 cut(s) 625
PshAI GACNNNNGTC 1 cut(s) 842
Psp5II RGGWCCY 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 3 cut(s) 371, 732, 814
PspOMI GGGCCC 1 cut(s) 730
PspPI GGNCC 4 cut(s) 625, 730, 731, 890
PspPPI RGGWCCY 1 cut(s) 625
PsuI RGATCY 1 cut(s) 561
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 2 cut(s) 558, 770
SatI GCNGC 2 cut(s) 354, 403
Sau3AI GATC 6 cut(s) 156, 509, 561, 690, 739, 804
Sau96I GGNCC 4 cut(s) 625, 730, 731, 890
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 2 cut(s) 374, 734
SfaNI GCATC 1 cut(s) 656
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 2 cut(s) 566, 735
SmoI CTYRAG 2 cut(s) 566, 735
SpeI ACTAGT 1 cut(s) 635
Sse9I AATT 5 cut(s) 6, 191, 281, 306, 930
SsiI CCGC 1 cut(s) 403
SspI AATATT 1 cut(s) 875
SspMI CTAG 1 cut(s) 636
StyD4I CCNGG 1 cut(s) 702
TaaI ACNGT 1 cut(s) 244
TaqI TCGA 1 cut(s) 155
TasI AATT 5 cut(s) 6, 191, 281, 306, 930
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 4 cut(s) 14, 331, 579, 683
Tru1I TTAA 2 cut(s) 558, 770
Tru9I TTAA 2 cut(s) 558, 770
TscAI CASTG 3 cut(s) 249, 301, 946
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 486, 938
TspGWI ACGGA 2 cut(s) 43, 797
TspRI CASTG 3 cut(s) 249, 301, 946
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 2 cut(s) 191, 281
XmnI GAANNNNTTC 1 cut(s) 134
XspI CTAG 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.