Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Reverse (-)

218242 .. 220066

Gene Structure 1825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000898.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgatctccgtggaaaacccaagcttcgacggcaagatggtgaccggaggtggccggaatcgccggaaatcggcaataatggctaactgctacagtggctttccccgctccaaaacgagcttctccggccaaatctccgtaaaatacctccacagacgtgacaaactaccttggtggaggcctggagaagataaggcctggagattaagcggctacagctgtactgctggatgctcggactctgagaaatgttcttgtgcagttaagaatggaggtgagatcccatttaactttagtggggctattgttgaagctaaatcccttgtgtatgagtgtggtccttcttgcaagtgtcctccttcttgccataatagagttagccagtatggtatcaagtttcagcttgaaatttttaaaactaaatcaatgggatggggggtgagatcccttaattccattccttcaggaagttttatttgtgagtatataggagagctccttgaagataaggaagctgaagcaagagctggtaatgatgagtatctgtttgatattgggaataactacaatgataattctctttgggatggactttcgacactcatgcctgatgcacactcaagttcttatgaagttgtggaggaaggtagcttcaccattgatgctgcacggaaaggcaatttggggagatttatcaaccatagttgttcccctaatctttatgcccaaaatgtcctttatgatcatgaggacaacagaattcctcacattatgttctttgccgctgagaacattcctccgttgcaagagttgacttatcattacaattatataatggatcaggttcatgattccaatggcaatataaagaagaataattgctattgcggttctccggagtgcactggcaggctgtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

306

Amino Acids

34.24

Weight (kDa)

6.25

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	108
AccIII	TCCGGA	1 cut(s)	895
AciI	CCGC	4 cut(s)	106, 210, 783, 888
AclWI	GGATC	3 cut(s)	274, 438, 846
AcoI	YGGCCR	2 cut(s)	52, 127
AcsI	RAATTY	2 cut(s)	408, 759
AcuI	CTGAAG	2 cut(s)	447, 537
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	311, 407, 503
AjiI	CACGTC	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	181, 197
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 665, 697
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	9 cut(s)	24, 120, 219, 314, 403, 496, 515, 527, 651
AluI	AGCT	9 cut(s)	24, 120, 219, 314, 403, 496, 515, 527, 651
Alw21I	GWGCWC	2 cut(s)	498, 905
Alw44I	GTGCAC	1 cut(s)	901
AlwI	GGATC	3 cut(s)	274, 438, 846
Aor13HI	TCCGGA	1 cut(s)	895
AoxI	GGCC	4 cut(s)	52, 127, 179, 195
ApaLI	GTGCAC	1 cut(s)	901
ApeKI	GCWGC	1 cut(s)	665
ApoI	RAATTY	2 cut(s)	408, 759
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	4 cut(s)	52, 287, 451, 646
AvaII	GGWCC	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	498
Bbv12I	GWGCWC	2 cut(s)	498, 905
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	3 cut(s)	31, 426, 581
BceAI	ACGGC	1 cut(s)	46
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BciT130I	CCWGG	2 cut(s)	183, 199
BclI	TGATCA	1 cut(s)	742
BfmI	CTRYAG	2 cut(s)	91, 214
BisI	GCNGC	3 cut(s)	211, 666, 783
BlsI	GCNGC	3 cut(s)	212, 667, 784
Bme1390I	CCNGG	2 cut(s)	183, 199
Bme18I	GGWCC	1 cut(s)	338
BmgBI	CACGTC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	338
BmrFI	CCNGG	2 cut(s)	183, 199
BmsI	GCATC	3 cut(s)	221, 601, 652
BpmI	CTGGAG	2 cut(s)	204, 220
BpuEI	CTTGAG	1 cut(s)	604
BsaBI	GATNNNNATC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	9, 170
BsaWI	WCCGGW	2 cut(s)	44, 895
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	382, 910
Bse8I	GATNNNNATC	1 cut(s)	540
BseAI	TCCGGA	1 cut(s)	895
BseBI	CCWGG	2 cut(s)	183, 199
BseDI	CCNNGG	2 cut(s)	9, 170
BseGI	GGATG	3 cut(s)	236, 437, 592
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	234, 777
BseNI	ACTGG	2 cut(s)	382, 910
BseSI	GKGCMC	1 cut(s)	905
BseXI	GCAGC	1 cut(s)	652
BsgI	GTGCAG	2 cut(s)	279, 651
BshFI	GGCC	4 cut(s)	54, 129, 181, 197
BsiHKAI	GWGCWC	2 cut(s)	498, 905
BsiSI	CCGG	5 cut(s)	45, 55, 64, 126, 896
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	4 cut(s)	54, 129, 181, 197
Bsp1286I	GDGCHC	2 cut(s)	498, 905
Bsp13I	TCCGGA	1 cut(s)	895
Bsp143I	GATC	5 cut(s)	3, 279, 443, 742, 838
BspACI	CCGC	4 cut(s)	106, 210, 783, 888
BspANI	GGCC	4 cut(s)	54, 129, 181, 197
BspCNI	CTCAG	2 cut(s)	235, 778
BspEI	TCCGGA	1 cut(s)	895
BspHI	TCATGA	2 cut(s)	745, 847
BspPI	GGATC	3 cut(s)	274, 438, 846
BsrBI	CCGCTC	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	382, 910
BssECI	CCNNGG	2 cut(s)	9, 170
BssMI	GATC	5 cut(s)	3, 279, 443, 742, 838
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	2 cut(s)	183, 199
Bst4CI	ACNGT	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	911
BstDEI	CTNAG	2 cut(s)	243, 786
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	40
BstF5I	GGATG	3 cut(s)	236, 437, 592
BstKTI	GATC	5 cut(s)	6, 282, 446, 745, 841
BstMBI	GATC	5 cut(s)	3, 279, 443, 742, 838
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 60, 80, 96, 105, 126, 216
BstNI	CCWGG	2 cut(s)	183, 199
BstPI	GGTNACC	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	181, 197
BstSFI	CTRYAG	2 cut(s)	91, 214
BstSLI	GKGCMC	1 cut(s)	905
BstV1I	GCAGC	1 cut(s)	652
BstX2I	RGATCY	2 cut(s)	279, 443
BstYI	RGATCY	2 cut(s)	279, 443
BsuRI	GGCC	4 cut(s)	54, 129, 181, 197
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	3 cut(s)	236, 437, 592
BtsIMutI	CAGTG	2 cut(s)	100, 903
Cac8I	GCNNGC	1 cut(s)	911
CciI	TCATGA	2 cut(s)	745, 847
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	3 cut(s)	604, 746, 848
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	243, 786
DpnI	GATC	5 cut(s)	5, 281, 445, 744, 840
DpnII	GATC	5 cut(s)	3, 279, 443, 742, 838
DraI	TTTAAA	1 cut(s)	415
EaeI	YGGCCR	2 cut(s)	52, 127
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	170
Eco147I	AGGCCT	2 cut(s)	181, 197
Eco24I	GRGCYC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	2 cut(s)	447, 537
Eco91I	GGTNACC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	496
EcoO65I	GGTNACC	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	759
EcoRII	CCWGG	2 cut(s)	181, 197
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	3 cut(s)	607, 749, 851
FatI	CATG	3 cut(s)	603, 745, 847
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	742
Fnu4HI	GCNGC	3 cut(s)	211, 666, 783
FokI	GGATG	3 cut(s)	243, 444, 599
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	3 cut(s)	211, 666, 783
GluI	GCNGC	3 cut(s)	211, 666, 783
GsuI	CTGGAG	2 cut(s)	204, 220
HaeIII	GGCC	4 cut(s)	54, 129, 181, 197
HapII	CCGG	5 cut(s)	45, 55, 64, 126, 896
Hin1II	CATG	3 cut(s)	607, 749, 851
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	3 cut(s)	58, 239, 851
HpaII	CCGG	5 cut(s)	45, 55, 64, 126, 896
HphI	GGTGA	4 cut(s)	52, 287, 451, 646
Hpy166II	GTNNAC	2 cut(s)	813, 903
Hpy188I	TCNGA	2 cut(s)	238, 244
Hpy188III	TCNNGA	4 cut(s)	465, 746, 848, 896
Hpy8I	GTNNAC	2 cut(s)	813, 903
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	351, 369, 471, 638
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	6 cut(s)	260, 348, 614, 668, 805, 903
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 60, 80, 96, 105, 126, 216
HpyF3I	CTNAG	2 cut(s)	243, 786
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	607, 749, 851
Kpn2I	TCCGGA	1 cut(s)	895
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	5 cut(s)	3, 279, 443, 742, 838
LmnI	GCTCC	2 cut(s)	113, 501
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	3 cut(s)	221, 601, 652
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	40, 158
MalI	GATC	5 cut(s)	5, 281, 445, 744, 840
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	5 cut(s)	3, 279, 443, 742, 838
MboII	GAAGA	3 cut(s)	200, 515, 883
MflI	RGATCY	2 cut(s)	279, 443
MhlI	GDGCHC	2 cut(s)	498, 905
MluCI	AATT	7 cut(s)	408, 451, 574, 679, 759, 826, 877
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	9 cut(s)	41, 158, 171, 266, 366, 634, 742, 774, 807
MroI	TCCGGA	1 cut(s)	895
MseI	TTAA	5 cut(s)	206, 264, 288, 414, 450
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	219, 785
MspI	CCGG	5 cut(s)	45, 55, 64, 126, 896
MspR9I	CCNGG	2 cut(s)	183, 199
MvaI	CCWGG	2 cut(s)	183, 199
MwoI	GCNNNNNNNGC	7 cut(s)	30, 60, 80, 96, 105, 126, 216
NdeII	GATC	5 cut(s)	3, 279, 443, 742, 838
NlaIII	CATG	3 cut(s)	607, 749, 851
NmuCI	GTSAC	2 cut(s)	40, 158
OliI	CACNNNNGTG	1 cut(s)	156
PagI	TCATGA	2 cut(s)	745, 847
PceI	AGGCCT	2 cut(s)	181, 197
PfeI	GAWTC	2 cut(s)	58, 851
PkrI	GCNGC	3 cut(s)	212, 667, 784
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	2 cut(s)	181, 197
PspEI	GGTNACC	1 cut(s)	40
PspGI	CCWGG	2 cut(s)	181, 197
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	2 cut(s)	279, 443
PvuII	CAGCTG	1 cut(s)	219
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	498
SaqAI	TTAA	5 cut(s)	206, 264, 288, 414, 450
SatI	GCNGC	3 cut(s)	211, 666, 783
Sau3AI	GATC	5 cut(s)	3, 279, 443, 742, 838
Sau96I	GGNCC	1 cut(s)	338
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	183, 199
SduI	GDGCHC	2 cut(s)	498, 905
SfaNI	GCATC	3 cut(s)	221, 601, 652
SfcI	CTRYAG	2 cut(s)	91, 214
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
Sse9I	AATT	7 cut(s)	408, 451, 574, 679, 759, 826, 877
SseBI	AGGCCT	2 cut(s)	181, 197
SsiI	CCGC	4 cut(s)	106, 210, 783, 888
SstI	GAGCTC	1 cut(s)	498
StuI	AGGCCT	2 cut(s)	181, 197
StyD4I	CCNGG	2 cut(s)	181, 197
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	27, 596
TasI	AATT	7 cut(s)	408, 451, 574, 679, 759, 826, 877
TatI	WGTACW	1 cut(s)	221
TauI	GCSGC	2 cut(s)	213, 785
TfiI	GAWTC	2 cut(s)	58, 851
Tru1I	TTAA	5 cut(s)	206, 264, 288, 414, 450
Tru9I	TTAA	5 cut(s)	206, 264, 288, 414, 450
TscAI	CASTG	2 cut(s)	100, 910
TseFI	GTSAC	2 cut(s)	40, 158
TseI	GCWGC	1 cut(s)	665
Tsp45I	GTSAC	2 cut(s)	40, 158
TspDTI	ATGAA	2 cut(s)	645, 836
TspGWI	ACGGA	3 cut(s)	127, 685, 789
TspRI	CASTG	2 cut(s)	100, 910
VneI	GTGCAC	1 cut(s)	901
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	2 cut(s)	408, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.