histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1050, 2583, 3159 |
| AccB1I | GGYRCC | 1 cut(s) | 2979 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 1234, 1469, 1754, 1804 |
| AccI | GTMKAC | 4 cut(s) | 999, 1284, 1569, 2949 |
| AciI | CCGC | 5 cut(s) | 159, 231, 2248, 2907, 3573 |
| AclI | AACGTT | 2 cut(s) | 366, 2737 |
| AcoI | YGGCCR | 1 cut(s) | 196 |
| AcuI | CTGAAG | 4 cut(s) | 36, 447, 3327, 3597 |
| AdeI | CACNNNGTG | 1 cut(s) | 2200 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2214 |
| AhlI | ACTAGT | 2 cut(s) | 2156, 2489 |
| AjiI | CACGTC | 1 cut(s) | 302 |
| AjnI | CCWGG | 3 cut(s) | 639, 1588, 2223 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 872, 904, 3300, 3332 |
| AleI | CACNNNNGTG | 1 cut(s) | 762 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 789, 821 |
| Alw21I | GWGCWC | 1 cut(s) | 116 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3032 |
| Ama87I | CYCGRG | 3 cut(s) | 178, 2069, 2371 |
| AoxI | GGCC | 4 cut(s) | 196, 228, 2425, 2554 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 253, 285 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 49, 634, 753, 1204, 3582 |
| AspLEI | GCGC | 2 cut(s) | 150, 3406 |
| AspS9I | GGNCC | 2 cut(s) | 215, 3128 |
| AsuC2I | CCSGG | 5 cut(s) | 179, 180, 1305, 2372, 2373 |
| AsuHPI | GGTGA | 9 cut(s) | 123, 305, 501, 971, 1604, 2212, 2399, 3077, 3436 |
| AsuII | TTCGAA | 1 cut(s) | 872 |
| AvaI | CYCGRG | 3 cut(s) | 178, 2069, 2371 |
| AvaII | GGWCC | 2 cut(s) | 215, 3128 |
| AxyI | CCTNAGG | 2 cut(s) | 2082, 2442 |
| BaeGI | GKGCMC | 1 cut(s) | 3146 |
| BalI | TGGCCA | 1 cut(s) | 198 |
| BamHI | GGATCC | 2 cut(s) | 797, 1943 |
| BanI | GGYRCC | 1 cut(s) | 2979 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1062, 1094 |
| BbsI | GAAGAC | 4 cut(s) | 563, 716, 2582, 3585 |
| Bbv12I | GWGCWC | 1 cut(s) | 116 |
| BceAI | ACGGC | 1 cut(s) | 2967 |
| BciT130I | CCWGG | 3 cut(s) | 641, 1590, 2225 |
| BciVI | GTATCC | 2 cut(s) | 2134, 2979 |
| BclI | TGATCA | 1 cut(s) | 3532 |
| BcnI | CCSGG | 5 cut(s) | 179, 180, 1305, 2372, 2373 |
| BcuI | ACTAGT | 2 cut(s) | 2156, 2489 |
| BfaI | CTAG | 7 cut(s) | 39, 1937, 2145, 2157, 2490, 2882, 2958 |
| BfmI | CTRYAG | 1 cut(s) | 561 |
| BfuI | GTATCC | 2 cut(s) | 2134, 2979 |
| BmcAI | AGTACT | 1 cut(s) | 376 |
| Bme1390I | CCNGG | 8 cut(s) | 179, 180, 641, 1305, 1590, 2225, 2372, 2373 |
| Bme18I | GGWCC | 2 cut(s) | 215, 3128 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2214 |
| BmeT110I | CYCGRG | 3 cut(s) | 178, 2069, 2371 |
| BmgBI | CACGTC | 1 cut(s) | 302 |
| BmgT120I | GGNCC | 2 cut(s) | 215, 3128 |
| BmiI | GGNNCC | 5 cut(s) | 216, 799, 1945, 2589, 2981 |
| BmrFI | CCNGG | 8 cut(s) | 179, 180, 641, 1305, 1590, 2225, 2372, 2373 |
| BmrI | ACTGGG | 2 cut(s) | 121, 387 |
| BmsI | GCATC | 9 cut(s) | 309, 1214, 1499, 1784, 1844, 2510, 3391, 3442, 3582 |
| BmuI | ACTGGG | 2 cut(s) | 121, 387 |
| BpiI | GAAGAC | 4 cut(s) | 563, 716, 2582, 3585 |
| BpmI | CTGGAG | 1 cut(s) | 572 |
| Bpu14I | TTCGAA | 1 cut(s) | 872 |
| BpuEI | CTTGAG | 4 cut(s) | 1479, 1764, 2306, 2981 |
| BpuMI | CCSGG | 5 cut(s) | 179, 180, 1305, 2372, 2373 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3232, 3330 |
| BsaI | GGTCTC | 6 cut(s) | 1453, 1738, 1873, 2760, 2793, 2864 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2553, 2583 |
| Bse1I | ACTGG | 6 cut(s) | 127, 199, 334, 382, 2790, 3700 |
| Bse21I | CCTNAGG | 2 cut(s) | 2082, 2442 |
| Bse3DI | GCAATG | 6 cut(s) | 826, 1225, 1510, 1795, 2210, 2496 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3232, 3330 |
| BseBI | CCWGG | 3 cut(s) | 641, 1590, 2225 |
| BseGI | GGATG | 6 cut(s) | 944, 1229, 1514, 1799, 2059, 3382 |
| BseJI | GATNNNNATC | 2 cut(s) | 3232, 3330 |
| BseMI | GCAATG | 6 cut(s) | 826, 1225, 1510, 1795, 2210, 2496 |
| BseMII | CTCAG | 7 cut(s) | 63, 1986, 2073, 2456, 2697, 3024, 3039 |
| BseNI | ACTGG | 6 cut(s) | 127, 199, 334, 382, 2790, 3700 |
| BseSI | GKGCMC | 1 cut(s) | 3146 |
| BseYI | CCCAGC | 4 cut(s) | 1114, 1399, 1684, 1819 |
| BsgI | GTGCAG | 2 cut(s) | 240, 3069 |
| BshFI | GGCC | 4 cut(s) | 198, 230, 2427, 2556 |
| BshNI | GGYRCC | 1 cut(s) | 2979 |
| BsiHKAI | GWGCWC | 1 cut(s) | 116 |
| BsiHKCI | CYCGRG | 3 cut(s) | 178, 2069, 2371 |
| BsiSI | CCGG | 4 cut(s) | 179, 1304, 2372, 3686 |
| BslFI | GGGAC | 3 cut(s) | 228, 1282, 2354 |
| BsmBI | CGTCTC | 1 cut(s) | 983 |
| BsmFI | GGGAC | 3 cut(s) | 228, 1282, 2354 |
| BsmI | GAATGC | 2 cut(s) | 964, 3026 |
| BsnI | GGCC | 4 cut(s) | 198, 230, 2427, 2556 |
| Bso31I | GGTCTC | 6 cut(s) | 1453, 1738, 1873, 2760, 2793, 2864 |
| BsoBI | CYCGRG | 3 cut(s) | 178, 2069, 2371 |
| Bsp119I | TTCGAA | 1 cut(s) | 872 |
| Bsp1286I | GDGCHC | 2 cut(s) | 116, 3146 |
| Bsp1407I | TGTACA | 3 cut(s) | 832, 1632, 1906 |
| Bsp19I | CCATGG | 4 cut(s) | 96, 1142, 1427, 1712 |
| BspACI | CCGC | 5 cut(s) | 159, 231, 2248, 2907, 3573 |
| BspANI | GGCC | 4 cut(s) | 198, 230, 2427, 2556 |
| BspCNI | CTCAG | 7 cut(s) | 64, 1985, 2074, 2455, 2696, 3025, 3038 |
| BspHI | TCATGA | 1 cut(s) | 2167 |
| BspLI | GGNNCC | 5 cut(s) | 216, 799, 1945, 2589, 2981 |
| BspMAI | CTGCAG | 1 cut(s) | 565 |
| BspT104I | TTCGAA | 1 cut(s) | 872 |
| BspT107I | GGYRCC | 1 cut(s) | 2979 |
| BspTNI | GGTCTC | 6 cut(s) | 1453, 1738, 1873, 2760, 2793, 2864 |
| BsrDI | GCAATG | 6 cut(s) | 826, 1225, 1510, 1795, 2210, 2496 |
| BsrGI | TGTACA | 3 cut(s) | 832, 1632, 1906 |
| BsrI | ACTGG | 6 cut(s) | 127, 199, 334, 382, 2790, 3700 |
| BssNAI | GTATAC | 4 cut(s) | 1000, 1285, 1570, 2950 |
| BssT1I | CCWWGG | 8 cut(s) | 96, 1142, 1228, 1427, 1513, 1712, 1798, 2557 |
| Bst1107I | GTATAC | 4 cut(s) | 1000, 1285, 1570, 2950 |
| Bst2UI | CCWGG | 3 cut(s) | 641, 1590, 2225 |
| Bst4CI | ACNGT | 8 cut(s) | 349, 388, 706, 959, 1264, 1424, 1954, 3692 |
| Bst6I | CTCTTC | 3 cut(s) | 744, 3288, 3659 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1224, 1509, 1794 |
| BstAUI | TGTACA | 3 cut(s) | 832, 1632, 1906 |
| BstBI | TTCGAA | 1 cut(s) | 872 |
| BstC8I | GCNNGC | 3 cut(s) | 2811, 2963, 3701 |
| BstDEI | CTNAG | 9 cut(s) | 72, 135, 406, 1972, 2082, 2442, 2683, 3025, 3033 |
| BstDSI | CCRYGG | 5 cut(s) | 96, 1142, 1427, 1712, 1847 |
| BstF5I | GGATG | 6 cut(s) | 944, 1229, 1514, 1799, 2059, 3382 |
| BstHHI | GCGC | 2 cut(s) | 150, 3406 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 204, 1224, 1509, 1794, 3403 |
| BstNI | CCWGG | 3 cut(s) | 641, 1590, 2225 |
| BstNSI | RCATGY | 5 cut(s) | 683, 732, 830, 912, 2965 |
| BstSCI | CCNGG | 8 cut(s) | 177, 178, 639, 1303, 1588, 2223, 2370, 2371 |
| BstSFI | CTRYAG | 1 cut(s) | 561 |
| BstSLI | GKGCMC | 1 cut(s) | 3146 |
| BstV2I | GAAGAC | 4 cut(s) | 563, 716, 2582, 3585 |
| BstX2I | RGATCY | 8 cut(s) | 435, 521, 797, 1943, 2086, 2316, 2478, 3069 |
| BstYI | RGATCY | 8 cut(s) | 435, 521, 797, 1943, 2086, 2316, 2478, 3069 |
| BstZ17I | GTATAC | 4 cut(s) | 1000, 1285, 1570, 2950 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2082, 2442 |
| BsuI | GTATCC | 2 cut(s) | 2134, 2979 |
| BsuRI | GGCC | 4 cut(s) | 198, 230, 2427, 2556 |
| BtgI | CCRYGG | 5 cut(s) | 96, 1142, 1427, 1712, 1847 |
| BtrI | CACGTC | 1 cut(s) | 302 |
| BtsCI | GGATG | 6 cut(s) | 944, 1229, 1514, 1799, 2059, 3382 |
| BtsIMutI | CAGTG | 3 cut(s) | 257, 711, 1269 |
| Cac8I | GCNNGC | 3 cut(s) | 2811, 2963, 3701 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3032 |
| CciI | TCATGA | 1 cut(s) | 2167 |
| CfoI | GCGC | 2 cut(s) | 150, 3406 |
| Cfr13I | GGNCC | 2 cut(s) | 215, 3128 |
| Cfr9I | CCCGGG | 2 cut(s) | 178, 2371 |
| CseI | GACGC | 4 cut(s) | 1119, 1404, 1689, 2204 |
| DdeI | CTNAG | 9 cut(s) | 72, 135, 406, 1972, 2082, 2442, 2683, 3025, 3033 |
| DraI | TTTAAA | 2 cut(s) | 2313, 3205 |
| DraIII | CACNNNGTG | 1 cut(s) | 2200 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2214 |
| EaeI | YGGCCR | 1 cut(s) | 196 |
| Eam1104I | CTCTTC | 3 cut(s) | 744, 3288, 3659 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2214 |
| EarI | CTCTTC | 3 cut(s) | 744, 3288, 3659 |
| Eco130I | CCWWGG | 8 cut(s) | 96, 1142, 1228, 1427, 1513, 1712, 1798, 2557 |
| Eco31I | GGTCTC | 6 cut(s) | 1453, 1738, 1873, 2760, 2793, 2864 |
| Eco32I | GATATC | 1 cut(s) | 739 |
| Eco47I | GGWCC | 2 cut(s) | 215, 3128 |
| Eco57I | CTGAAG | 4 cut(s) | 36, 447, 3327, 3597 |
| Eco81I | CCTNAGG | 2 cut(s) | 2082, 2442 |
| Eco88I | CYCGRG | 3 cut(s) | 178, 2069, 2371 |
| EcoO109I | RGGNCCY | 1 cut(s) | 215 |
| EcoRI | GAATTC | 1 cut(s) | 3549 |
| EcoRII | CCWGG | 3 cut(s) | 639, 1588, 2223 |
| EcoRV | GATATC | 1 cut(s) | 739 |
| EcoT14I | CCWWGG | 8 cut(s) | 96, 1142, 1228, 1427, 1513, 1712, 1798, 2557 |
| EcoT22I | ATGCAT | 2 cut(s) | 681, 914 |
| ErhI | CCWWGG | 8 cut(s) | 96, 1142, 1228, 1427, 1513, 1712, 1798, 2557 |
| Esp3I | CGTCTC | 1 cut(s) | 983 |
| FaqI | GGGAC | 3 cut(s) | 228, 1282, 2354 |
| FauI | CCCGC | 1 cut(s) | 2241 |
| FauNDI | CATATG | 1 cut(s) | 2133 |
| FbaI | TGATCA | 1 cut(s) | 3532 |
| FblI | GTMKAC | 4 cut(s) | 999, 1284, 1569, 2949 |
| FokI | GGATG | 6 cut(s) | 951, 1236, 1521, 1806, 2066, 3389 |
| FspBI | CTAG | 7 cut(s) | 39, 1937, 2145, 2157, 2490, 2882, 2958 |
| GlaI | GCGC | 2 cut(s) | 149, 3405 |
| GsaI | CCCAGC | 4 cut(s) | 1118, 1403, 1688, 1823 |
| GsuI | CTGGAG | 1 cut(s) | 572 |
| HaeIII | GGCC | 4 cut(s) | 198, 230, 2427, 2556 |
| HapII | CCGG | 4 cut(s) | 179, 1304, 2372, 3686 |
| HgaI | GACGC | 4 cut(s) | 1119, 1404, 1689, 2204 |
| HhaI | GCGC | 2 cut(s) | 150, 3406 |
| Hin6I | GCGC | 2 cut(s) | 148, 3404 |
| HinP1I | GCGC | 2 cut(s) | 148, 3404 |
| HincII | GTYRAC | 4 cut(s) | 1959, 1969, 2188, 3603 |
| HindII | GTYRAC | 4 cut(s) | 1959, 1969, 2188, 3603 |
| HindIII | AAGCTT | 2 cut(s) | 2603, 2765 |
| HpaII | CCGG | 4 cut(s) | 179, 1304, 2372, 3686 |
| HphI | GGTGA | 9 cut(s) | 123, 305, 501, 971, 1604, 2212, 2399, 3077, 3436 |
| HpyCH4III | ACNGT | 8 cut(s) | 349, 388, 706, 959, 1264, 1424, 1954, 3692 |
| HpyCH4IV | ACGT | 7 cut(s) | 301, 366, 882, 1081, 1375, 2702, 2737 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 204, 1224, 1509, 1794, 3403 |
| HpyF3I | CTNAG | 9 cut(s) | 72, 135, 406, 1972, 2082, 2442, 2683, 3025, 3033 |
| HpySE526I | ACGT | 7 cut(s) | 301, 366, 882, 1081, 1375, 2702, 2737 |
| HspAI | GCGC | 2 cut(s) | 148, 3404 |
| Ksp22I | TGATCA | 1 cut(s) | 3532 |
| LmnI | GCTCC | 1 cut(s) | 2363 |
| LweI | GCATC | 9 cut(s) | 309, 1214, 1499, 1784, 1844, 2510, 3391, 3442, 3582 |
| MaeI | CTAG | 7 cut(s) | 39, 1937, 2145, 2157, 2490, 2882, 2958 |
| MaeII | ACGT | 7 cut(s) | 301, 366, 882, 1081, 1375, 2702, 2737 |
| MaeIII | GTNAC | 5 cut(s) | 129, 362, 605, 932, 2095 |
| MfeI | CAATTG | 4 cut(s) | 1058, 1343, 1628, 2181 |
| MflI | RGATCY | 8 cut(s) | 435, 521, 797, 1943, 2086, 2316, 2478, 3069 |
| MhlI | GDGCHC | 2 cut(s) | 116, 3146 |
| MlsI | TGGCCA | 1 cut(s) | 198 |
| MluNI | TGGCCA | 1 cut(s) | 198 |
| MlyI | GAGTC | 2 cut(s) | 1964, 2092 |
| MmeI | TCCRAC | 3 cut(s) | 463, 1510, 2963 |
| Mox20I | TGGCCA | 1 cut(s) | 198 |
| Mph1103I | ATGCAT | 2 cut(s) | 681, 914 |
| MroXI | GAANNNNTTC | 5 cut(s) | 49, 634, 753, 1204, 3582 |
| MscI | TGGCCA | 1 cut(s) | 198 |
| MslI | CAYNNNNRTG | 2 cut(s) | 762, 1808 |
| Msp20I | TGGCCA | 1 cut(s) | 198 |
| MspA1I | CMGCKG | 5 cut(s) | 161, 599, 2909, 3009, 3575 |
| MspI | CCGG | 4 cut(s) | 179, 1304, 2372, 3686 |
| MspR9I | CCNGG | 8 cut(s) | 179, 180, 641, 1305, 1590, 2225, 2372, 2373 |
| MunI | CAATTG | 4 cut(s) | 1058, 1343, 1628, 2181 |
| Mva1269I | GAATGC | 2 cut(s) | 964, 3026 |
| MvaI | CCWGG | 3 cut(s) | 641, 1590, 2225 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 204, 1224, 1509, 1794, 3403 |
| NciI | CCSGG | 5 cut(s) | 179, 180, 1305, 2372, 2373 |
| NcoI | CCATGG | 4 cut(s) | 96, 1142, 1427, 1712 |
| NdeI | CATATG | 1 cut(s) | 2133 |
| NlaIV | GGNNCC | 5 cut(s) | 216, 799, 1945, 2589, 2981 |
| NmuCI | GTSAC | 3 cut(s) | 129, 605, 2095 |
| NsiI | ATGCAT | 2 cut(s) | 681, 914 |
| NspI | RCATGY | 5 cut(s) | 683, 732, 830, 912, 2965 |
| NspV | TTCGAA | 1 cut(s) | 872 |
| OliI | CACNNNNGTG | 1 cut(s) | 762 |
| PaeI | GCATGC | 1 cut(s) | 2965 |
| PaeR7I | CTCGAG | 1 cut(s) | 2069 |
| PagI | TCATGA | 1 cut(s) | 2167 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2014 |
| PctI | GAATGC | 2 cut(s) | 964, 3026 |
| PdmI | GAANNNNTTC | 5 cut(s) | 49, 634, 753, 1204, 3582 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 1234, 1469, 1754, 1804 |
| PleI | GAGTC | 2 cut(s) | 1964, 2092 |
| PpsI | GAGTC | 2 cut(s) | 1964, 2092 |
| PpuMI | RGGWCCY | 1 cut(s) | 215 |
| PsiI | TTATAA | 3 cut(s) | 1050, 2583, 3159 |
| Psp1406I | AACGTT | 2 cut(s) | 366, 2737 |
| Psp5II | RGGWCCY | 1 cut(s) | 215 |
| Psp6I | CCWGG | 3 cut(s) | 639, 1588, 2223 |
| PspFI | CCCAGC | 4 cut(s) | 1114, 1399, 1684, 1819 |
| PspGI | CCWGG | 3 cut(s) | 639, 1588, 2223 |
| PspN4I | GGNNCC | 5 cut(s) | 216, 799, 1945, 2589, 2981 |
| PspPI | GGNCC | 2 cut(s) | 215, 3128 |
| PspPPI | RGGWCCY | 1 cut(s) | 215 |
| PstI | CTGCAG | 1 cut(s) | 565 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3032 |
| PsuI | RGATCY | 8 cut(s) | 435, 521, 797, 1943, 2086, 2316, 2478, 3069 |
| PvuII | CAGCTG | 2 cut(s) | 599, 3009 |
| RseI | CAYNNNNRTG | 2 cut(s) | 762, 1808 |
| Sau96I | GGNCC | 2 cut(s) | 215, 3128 |
| ScaI | AGTACT | 1 cut(s) | 376 |
| SchI | GAGTC | 2 cut(s) | 1964, 2092 |
| ScrFI | CCNGG | 8 cut(s) | 179, 180, 641, 1305, 1590, 2225, 2372, 2373 |
| SduI | GDGCHC | 2 cut(s) | 116, 3146 |
| SfaNI | GCATC | 9 cut(s) | 309, 1214, 1499, 1784, 1844, 2510, 3391, 3442, 3582 |
| SfcI | CTRYAG | 1 cut(s) | 561 |
| Sfr274I | CTCGAG | 1 cut(s) | 2069 |
| SfuI | TTCGAA | 1 cut(s) | 872 |
| SinI | GGWCC | 2 cut(s) | 215, 3128 |
| SlaI | CTCGAG | 1 cut(s) | 2069 |
| SmaI | CCCGGG | 2 cut(s) | 180, 2373 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 762, 1808 |
| SmlI | CTYRAG | 5 cut(s) | 1494, 1779, 2069, 2321, 2996 |
| SmoI | CTYRAG | 5 cut(s) | 1494, 1779, 2069, 2321, 2996 |
| SpeI | ACTAGT | 2 cut(s) | 2156, 2489 |
| SphI | GCATGC | 1 cut(s) | 2965 |
| SsiI | CCGC | 5 cut(s) | 159, 231, 2248, 2907, 3573 |
| SspI | AATATT | 2 cut(s) | 26, 502 |
| SspMI | CTAG | 7 cut(s) | 39, 1937, 2145, 2157, 2490, 2882, 2958 |
| StyD4I | CCNGG | 8 cut(s) | 177, 178, 639, 1303, 1588, 2223, 2370, 2371 |
| StyI | CCWWGG | 8 cut(s) | 96, 1142, 1228, 1427, 1513, 1712, 1798, 2557 |
| TaaI | ACNGT | 8 cut(s) | 349, 388, 706, 959, 1264, 1424, 1954, 3692 |
| TaiI | ACGT | 7 cut(s) | 304, 369, 885, 1084, 1378, 2705, 2740 |
| TaqI | TCGA | 5 cut(s) | 583, 872, 1097, 2070, 2797 |
| TatI | WGTACW | 8 cut(s) | 374, 832, 1632, 1661, 1906, 2150, 3692, 3705 |
| TauI | GCSGC | 2 cut(s) | 233, 3575 |
| TscAI | CASTG | 3 cut(s) | 264, 711, 1269 |
| TseFI | GTSAC | 3 cut(s) | 129, 605, 2095 |
| Tsp45I | GTSAC | 3 cut(s) | 129, 605, 2095 |
| TspGWI | ACGGA | 7 cut(s) | 110, 951, 1007, 1286, 1836, 3075, 3138 |
| TspMI | CCCGGG | 2 cut(s) | 178, 2371 |
| TspRI | CASTG | 3 cut(s) | 264, 711, 1269 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 1234, 1469, 1754, 1804 |
| VpaK11BI | GGWCC | 2 cut(s) | 215, 3128 |
| XbaI | TCTAGA | 1 cut(s) | 38 |
| XceI | RCATGY | 5 cut(s) | 683, 732, 830, 912, 2965 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 446 |
| XhoI | CTCGAG | 1 cut(s) | 2069 |
| XmaI | CCCGGG | 2 cut(s) | 178, 2371 |
| XmiI | GTMKAC | 4 cut(s) | 999, 1284, 1569, 2949 |
| XmnI | GAANNNNTTC | 5 cut(s) | 49, 634, 753, 1204, 3582 |
| XspI | CTAG | 7 cut(s) | 39, 1937, 2145, 2157, 2490, 2882, 2958 |
| ZrmI | AGTACT | 1 cut(s) | 376 |
| Zsp2I | ATGCAT | 2 cut(s) | 681, 914 |