histone-lysine N-methyltransferase, H3 lysine-9 specific
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 293 - 441 | 7e-53 | SAD/SRA domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 760 |
| AccIII | TCCGGA | 1 cut(s) | 1096 |
| AclWI | GGATC | 1 cut(s) | 1177 |
| AcsI | RAATTY | 2 cut(s) | 911, 1054 |
| AcuI | CTGAAG | 2 cut(s) | 542, 1131 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 143, 185, 515, 721, 962 |
| AflIII | ACRYGT | 1 cut(s) | 883 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 110, 738 |
| AhlI | ACTAGT | 1 cut(s) | 1007 |
| AjnI | CCWGG | 3 cut(s) | 136, 473, 508 |
| AleI | CACNNNNGTG | 1 cut(s) | 270 |
| AluBI | AGCT | 7 cut(s) | 262, 556, 562, 824, 1123, 1285, 1326 |
| AluI | AGCT | 7 cut(s) | 262, 556, 562, 824, 1123, 1285, 1326 |
| Alw26I | GTCTC | 3 cut(s) | 97, 118, 725 |
| AlwI | GGATC | 1 cut(s) | 1177 |
| Ama87I | CYCGRG | 1 cut(s) | 92 |
| Aor13HI | TCCGGA | 1 cut(s) | 1096 |
| AoxI | GGCC | 5 cut(s) | 89, 207, 492, 1072, 1271 |
| ApaI | GGGCCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 4 cut(s) | 22, 681, 684, 824 |
| ApoI | RAATTY | 2 cut(s) | 911, 1054 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 162, 261 |
| AspS9I | GGNCC | 5 cut(s) | 89, 90, 493, 1072, 1271 |
| AsuC2I | CCSGG | 1 cut(s) | 891 |
| AsuHPI | GGTGA | 2 cut(s) | 736, 944 |
| AvaI | CYCGRG | 1 cut(s) | 92 |
| BaeGI | GKGCMC | 1 cut(s) | 93 |
| BanII | GRGCYC | 1 cut(s) | 93 |
| BbsI | GAAGAC | 1 cut(s) | 656 |
| BbvI | GCAGC | 4 cut(s) | 34, 693, 696, 811 |
| BccI | CCATC | 6 cut(s) | 325, 337, 399, 719, 1199, 1226 |
| BciT130I | CCWGG | 3 cut(s) | 138, 475, 510 |
| BcnI | CCSGG | 1 cut(s) | 891 |
| BcoDI | GTCTC | 3 cut(s) | 97, 118, 725 |
| BcuI | ACTAGT | 1 cut(s) | 1007 |
| BfaI | CTAG | 5 cut(s) | 321, 563, 672, 1008, 1304 |
| BglII | AGATCT | 1 cut(s) | 569 |
| BisI | GCNGC | 4 cut(s) | 23, 682, 685, 825 |
| BlsI | GCNGC | 4 cut(s) | 24, 683, 686, 826 |
| Bme1390I | CCNGG | 4 cut(s) | 138, 475, 510, 891 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 110, 738 |
| BmeT110I | CYCGRG | 1 cut(s) | 92 |
| BmgT120I | GGNCC | 5 cut(s) | 89, 90, 493, 1072, 1271 |
| BmiI | GGNNCC | 3 cut(s) | 91, 1107, 1272 |
| BmrFI | CCNGG | 4 cut(s) | 138, 475, 510, 891 |
| BmsI | GCATC | 7 cut(s) | 470, 568, 697, 987, 1028, 1080, 1102 |
| BpiI | GAAGAC | 1 cut(s) | 656 |
| BpuEI | CTTGAG | 3 cut(s) | 279, 821, 945 |
| BpuMI | CCSGG | 1 cut(s) | 891 |
| BsaI | GGTCTC | 1 cut(s) | 97 |
| BsaJI | CCNNGG | 7 cut(s) | 78, 137, 210, 353, 889, 1075, 1186 |
| BsaWI | WCCGGW | 1 cut(s) | 1096 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1071, 1101 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 143, 185, 515, 721, 962 |
| Bse1I | ACTGG | 3 cut(s) | 661, 771, 868 |
| BseAI | TCCGGA | 1 cut(s) | 1096 |
| BseBI | CCWGG | 3 cut(s) | 138, 475, 510 |
| BseDI | CCNNGG | 7 cut(s) | 78, 137, 210, 353, 889, 1075, 1186 |
| BseGI | GGATG | 6 cut(s) | 250, 348, 466, 711, 712, 1093 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 143, 185, 515, 721, 962 |
| BseMII | CTCAG | 3 cut(s) | 45, 615, 817 |
| BseNI | ACTGG | 3 cut(s) | 661, 771, 868 |
| BseRI | GAGGAG | 1 cut(s) | 528 |
| BseSI | GKGCMC | 1 cut(s) | 93 |
| BseXI | GCAGC | 4 cut(s) | 34, 693, 696, 811 |
| BshFI | GGCC | 5 cut(s) | 91, 209, 494, 1074, 1273 |
| BsiHKCI | CYCGRG | 1 cut(s) | 92 |
| BsiSI | CCGG | 2 cut(s) | 891, 1097 |
| BslFI | GGGAC | 2 cut(s) | 872, 894 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 143, 185, 515, 721, 962 |
| BsmAI | GTCTC | 3 cut(s) | 97, 118, 725 |
| BsmBI | CGTCTC | 1 cut(s) | 725 |
| BsmFI | GGGAC | 2 cut(s) | 872, 894 |
| BsnI | GGCC | 5 cut(s) | 91, 209, 494, 1074, 1273 |
| Bso31I | GGTCTC | 1 cut(s) | 97 |
| BsoBI | CYCGRG | 1 cut(s) | 92 |
| Bsp120I | GGGCCC | 1 cut(s) | 89 |
| Bsp1286I | GDGCHC | 1 cut(s) | 93 |
| Bsp13I | TCCGGA | 1 cut(s) | 1096 |
| Bsp143I | GATC | 3 cut(s) | 569, 1114, 1182 |
| BspANI | GGCC | 5 cut(s) | 91, 209, 494, 1074, 1273 |
| BspCNI | CTCAG | 3 cut(s) | 46, 614, 816 |
| BspEI | TCCGGA | 1 cut(s) | 1096 |
| BspHI | TCATGA | 1 cut(s) | 691 |
| BspLI | GGNNCC | 3 cut(s) | 91, 1107, 1272 |
| BspPI | GGATC | 1 cut(s) | 1177 |
| BspQI | GCTCTTC | 1 cut(s) | 252 |
| BspTNI | GGTCTC | 1 cut(s) | 97 |
| BsrI | ACTGG | 3 cut(s) | 661, 771, 868 |
| BssECI | CCNNGG | 7 cut(s) | 78, 137, 210, 353, 889, 1075, 1186 |
| BssMI | GATC | 3 cut(s) | 569, 1114, 1182 |
| BssT1I | CCWWGG | 4 cut(s) | 78, 210, 353, 1075 |
| Bst2UI | CCWGG | 3 cut(s) | 138, 475, 510 |
| Bst4CI | ACNGT | 1 cut(s) | 272 |
| Bst6I | CTCTTC | 1 cut(s) | 252 |
| BstC8I | GCNNGC | 6 cut(s) | 282, 459, 1002, 1157, 1161, 1328 |
| BstDEI | CTNAG | 3 cut(s) | 54, 601, 803 |
| BstDSI | CCRYGG | 1 cut(s) | 1186 |
| BstF5I | GGATG | 6 cut(s) | 250, 348, 466, 711, 712, 1093 |
| BstKTI | GATC | 3 cut(s) | 572, 1117, 1185 |
| BstMAI | GTCTC | 3 cut(s) | 97, 118, 725 |
| BstMBI | GATC | 3 cut(s) | 569, 1114, 1182 |
| BstNI | CCWGG | 3 cut(s) | 138, 475, 510 |
| BstNSI | RCATGY | 3 cut(s) | 887, 1159, 1163 |
| BstSCI | CCNGG | 4 cut(s) | 136, 473, 508, 889 |
| BstSLI | GKGCMC | 1 cut(s) | 93 |
| BstV1I | GCAGC | 4 cut(s) | 34, 693, 696, 811 |
| BstV2I | GAAGAC | 1 cut(s) | 656 |
| BstX2I | RGATCY | 1 cut(s) | 569 |
| BstYI | RGATCY | 1 cut(s) | 569 |
| BsuRI | GGCC | 5 cut(s) | 91, 209, 494, 1074, 1273 |
| BtgI | CCRYGG | 1 cut(s) | 1186 |
| BtgZI | GCGATG | 1 cut(s) | 921 |
| BtsCI | GGATG | 6 cut(s) | 250, 348, 466, 711, 712, 1093 |
| BtsIMutI | CAGTG | 1 cut(s) | 277 |
| Cac8I | GCNNGC | 6 cut(s) | 282, 459, 1002, 1157, 1161, 1328 |
| CciI | TCATGA | 1 cut(s) | 691 |
| Cfr13I | GGNCC | 5 cut(s) | 89, 90, 493, 1072, 1271 |
| CviAII | CATG | 5 cut(s) | 692, 884, 1156, 1160, 1277 |
| DdeI | CTNAG | 3 cut(s) | 54, 601, 803 |
| DpnI | GATC | 3 cut(s) | 571, 1116, 1184 |
| DpnII | GATC | 3 cut(s) | 569, 1114, 1182 |
| DraI | TTTAAA | 1 cut(s) | 820 |
| DriI | GACNNNNNGTC | 2 cut(s) | 110, 738 |
| Eam1104I | CTCTTC | 1 cut(s) | 252 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 110, 738 |
| EarI | CTCTTC | 1 cut(s) | 252 |
| Eco130I | CCWWGG | 4 cut(s) | 78, 210, 353, 1075 |
| Eco24I | GRGCYC | 1 cut(s) | 93 |
| Eco31I | GGTCTC | 1 cut(s) | 97 |
| Eco57I | CTGAAG | 2 cut(s) | 542, 1131 |
| Eco88I | CYCGRG | 1 cut(s) | 92 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1271 |
| EcoRI | GAATTC | 1 cut(s) | 1054 |
| EcoRII | CCWGG | 3 cut(s) | 136, 473, 508 |
| EcoT14I | CCWWGG | 4 cut(s) | 78, 210, 353, 1075 |
| EcoT22I | ATGCAT | 2 cut(s) | 1095, 1161 |
| EcoT38I | GRGCYC | 1 cut(s) | 93 |
| ErhI | CCWWGG | 4 cut(s) | 78, 210, 353, 1075 |
| Esp3I | CGTCTC | 1 cut(s) | 725 |
| FaeI | CATG | 5 cut(s) | 695, 887, 1159, 1163, 1280 |
| FaqI | GGGAC | 2 cut(s) | 872, 894 |
| FatI | CATG | 5 cut(s) | 691, 883, 1155, 1159, 1276 |
| FblI | GTMKAC | 1 cut(s) | 760 |
| Fnu4HI | GCNGC | 4 cut(s) | 23, 682, 685, 825 |
| FokI | GGATG | 6 cut(s) | 257, 355, 453, 698, 719, 1080 |
| FriOI | GRGCYC | 1 cut(s) | 93 |
| Fsp4HI | GCNGC | 4 cut(s) | 23, 682, 685, 825 |
| FspBI | CTAG | 5 cut(s) | 321, 563, 672, 1008, 1304 |
| GluI | GCNGC | 4 cut(s) | 23, 682, 685, 825 |
| HaeIII | GGCC | 5 cut(s) | 91, 209, 494, 1074, 1273 |
| HapII | CCGG | 2 cut(s) | 891, 1097 |
| Hin1II | CATG | 5 cut(s) | 695, 887, 1159, 1163, 1280 |
| HindIII | AAGCTT | 3 cut(s) | 554, 1121, 1283 |
| HinfI | GANTC | 6 cut(s) | 32, 50, 111, 548, 832, 1168 |
| HpaII | CCGG | 2 cut(s) | 891, 1097 |
| HphI | GGTGA | 2 cut(s) | 736, 944 |
| Hpy166II | GTNNAC | 2 cut(s) | 146, 761 |
| Hpy188I | TCNGA | 9 cut(s) | 55, 238, 421, 447, 604, 716, 806, 1204, 1323 |
| Hpy188III | TCNNGA | 7 cut(s) | 39, 125, 167, 251, 692, 838, 1097 |
| Hpy8I | GTNNAC | 2 cut(s) | 146, 761 |
| HpyAV | CCTTC | 8 cut(s) | 475, 480, 698, 782, 801, 835, 839, 1255 |
| HpyCH4III | ACNGT | 1 cut(s) | 272 |
| HpyCH4IV | ACGT | 2 cut(s) | 349, 734 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 601, 803 |
| HpySE526I | ACGT | 2 cut(s) | 349, 734 |
| Hsp92II | CATG | 5 cut(s) | 695, 887, 1159, 1163, 1280 |
| Kpn2I | TCCGGA | 1 cut(s) | 1096 |
| Kzo9I | GATC | 3 cut(s) | 569, 1114, 1182 |
| LguI | GCTCTTC | 1 cut(s) | 252 |
| Lsp1109I | GCAGC | 4 cut(s) | 34, 693, 696, 811 |
| LweI | GCATC | 7 cut(s) | 470, 568, 697, 987, 1028, 1080, 1102 |
| MaeI | CTAG | 5 cut(s) | 321, 563, 672, 1008, 1304 |
| MaeII | ACGT | 2 cut(s) | 349, 734 |
| MaeIII | GTNAC | 2 cut(s) | 125, 724 |
| MalI | GATC | 3 cut(s) | 571, 1116, 1184 |
| MboI | GATC | 3 cut(s) | 569, 1114, 1182 |
| MboII | GAAGA | 9 cut(s) | 81, 269, 413, 416, 661, 1006, 1124, 1159, 1221 |
| MfeI | CAATTG | 1 cut(s) | 45 |
| MflI | RGATCY | 1 cut(s) | 569 |
| MhlI | GDGCHC | 1 cut(s) | 93 |
| MlyI | GAGTC | 2 cut(s) | 120, 1162 |
| MmeI | TCCRAC | 2 cut(s) | 9, 1238 |
| Mph1103I | ATGCAT | 2 cut(s) | 1095, 1161 |
| MroI | TCCGGA | 1 cut(s) | 1096 |
| MroXI | GAANNNNTTC | 2 cut(s) | 162, 261 |
| MseI | TTAA | 2 cut(s) | 819, 933 |
| MslI | CAYNNNNRTG | 2 cut(s) | 181, 270 |
| MspI | CCGG | 2 cut(s) | 891, 1097 |
| MspR9I | CCNGG | 4 cut(s) | 138, 475, 510, 891 |
| MunI | CAATTG | 1 cut(s) | 45 |
| MvaI | CCWGG | 3 cut(s) | 138, 475, 510 |
| NciI | CCSGG | 1 cut(s) | 891 |
| NdeII | GATC | 3 cut(s) | 569, 1114, 1182 |
| NlaIII | CATG | 5 cut(s) | 695, 887, 1159, 1163, 1280 |
| NlaIV | GGNNCC | 3 cut(s) | 91, 1107, 1272 |
| NmuCI | GTSAC | 2 cut(s) | 125, 724 |
| NsiI | ATGCAT | 2 cut(s) | 1095, 1161 |
| NspI | RCATGY | 3 cut(s) | 887, 1159, 1163 |
| OliI | CACNNNNGTG | 1 cut(s) | 270 |
| PaeI | GCATGC | 2 cut(s) | 1159, 1163 |
| PagI | TCATGA | 1 cut(s) | 691 |
| PciI | ACATGT | 1 cut(s) | 883 |
| PciSI | GCTCTTC | 1 cut(s) | 252 |
| PdmI | GAANNNNTTC | 2 cut(s) | 162, 261 |
| PfeI | GAWTC | 4 cut(s) | 32, 50, 548, 832 |
| PkrI | GCNGC | 4 cut(s) | 24, 683, 686, 826 |
| PleI | GAGTC | 2 cut(s) | 119, 1162 |
| PpsI | GAGTC | 2 cut(s) | 119, 1162 |
| PscI | ACATGT | 1 cut(s) | 883 |
| Psp6I | CCWGG | 3 cut(s) | 136, 473, 508 |
| PspGI | CCWGG | 3 cut(s) | 136, 473, 508 |
| PspN4I | GGNNCC | 3 cut(s) | 91, 1107, 1272 |
| PspOMI | GGGCCC | 1 cut(s) | 89 |
| PspPI | GGNCC | 5 cut(s) | 89, 90, 493, 1072, 1271 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 147, 179 |
| PsuI | RGATCY | 1 cut(s) | 569 |
| RseI | CAYNNNNRTG | 2 cut(s) | 181, 270 |
| SapI | GCTCTTC | 1 cut(s) | 252 |
| SaqAI | TTAA | 2 cut(s) | 819, 933 |
| SatI | GCNGC | 4 cut(s) | 23, 682, 685, 825 |
| Sau3AI | GATC | 3 cut(s) | 569, 1114, 1182 |
| Sau96I | GGNCC | 5 cut(s) | 89, 90, 493, 1072, 1271 |
| SchI | GAGTC | 2 cut(s) | 120, 1162 |
| ScrFI | CCNGG | 4 cut(s) | 138, 475, 510, 891 |
| SduI | GDGCHC | 1 cut(s) | 93 |
| SfaNI | GCATC | 7 cut(s) | 470, 568, 697, 987, 1028, 1080, 1102 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 181, 270 |
| SmlI | CTYRAG | 3 cut(s) | 294, 836, 960 |
| SmoI | CTYRAG | 3 cut(s) | 294, 836, 960 |
| SpeI | ACTAGT | 1 cut(s) | 1007 |
| SphI | GCATGC | 2 cut(s) | 1159, 1163 |
| SspI | AATATT | 3 cut(s) | 631, 937, 1220 |
| SspMI | CTAG | 5 cut(s) | 321, 563, 672, 1008, 1304 |
| StyD4I | CCNGG | 4 cut(s) | 136, 473, 508, 889 |
| StyI | CCWWGG | 4 cut(s) | 78, 210, 353, 1075 |
| TaaI | ACNGT | 1 cut(s) | 272 |
| TaiI | ACGT | 2 cut(s) | 352, 737 |
| TaqI | TCGA | 3 cut(s) | 38, 204, 677 |
| TfiI | GAWTC | 4 cut(s) | 32, 50, 548, 832 |
| Tru1I | TTAA | 2 cut(s) | 819, 933 |
| Tru9I | TTAA | 2 cut(s) | 819, 933 |
| TscAI | CASTG | 1 cut(s) | 277 |
| TseFI | GTSAC | 2 cut(s) | 125, 724 |
| TseI | GCWGC | 4 cut(s) | 22, 681, 684, 824 |
| Tsp45I | GTSAC | 2 cut(s) | 125, 724 |
| TspDTI | ATGAA | 7 cut(s) | 237, 242, 270, 623, 680, 905, 924 |
| TspGWI | ACGGA | 2 cut(s) | 719, 1175 |
| TspRI | CASTG | 1 cut(s) | 277 |
| XapI | RAATTY | 2 cut(s) | 911, 1054 |
| XceI | RCATGY | 3 cut(s) | 887, 1159, 1163 |
| XmiI | GTMKAC | 1 cut(s) | 760 |
| XmnI | GAANNNNTTC | 2 cut(s) | 162, 261 |
| XspI | CTAG | 5 cut(s) | 321, 563, 672, 1008, 1304 |
| Zsp2I | ATGCAT | 2 cut(s) | 1095, 1161 |