Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000355

Physical Location & Seq

Genomic Coordinates Reverse (-)

45724212 .. 45725231

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGTGGTTGTAGAGGCGGTGCCACTTTTGGCATCATCAAGAGAAAATGTGTCACGAAGTGATATCTCTTCTCAGGAAAGGTTGGAAAGGTTTCCCATGGAGCATGGCGAGTGTTTTTCCCATACTAAGTCACCTGAGTTTAAGAGGCGTAGAGTCTCTGCTGTTCGTGATTTTCCTTTAGGGTGTGGACCATATGCTCAGTTAAGCAGTTTGAGACCTGTCAAAGAGGTGGCTTCTGTTGGTATTCCAAAGGAAGAGATGGCCACGGCTCTGTTGGATAGAAATTGTTTTTCACTGCCTTATGGGTCCACATCTGTATCTAATGACAATGGTCCAGCAAAGTTTCCAGATAAAATGTATCCTCGTCGAAGTGAAGTAGAAGCTGTCTGGGACTTTCCTCCATTCTGTGGAATAAATGCTGCTTTGGAGGCCAGGACTTTGGGTCAAAAGAAGTCAGTCATGGGTTACAAAGCATCATCATCAAACACAGCAAAGACTGATGTGAAACAAACGGGAATTGGGGACAGAGTGCAACCTAACACTGACAAAAAAATTCACAGGGAAAAGCCTTTTGATATATCTCCTTCTCCCAACCATCTGCATGAAGTAGATTTCGAAAGCTCGCGACTTACATTGGATAAGTTGGTTGTGTTGGGCTTGATGGCTTCATCAAATTGTCCATGGAAGAAAGGATGCAAGCACAAATCAAACAGTGGTATCAGTGAAAGGAAAAGAGAGAAATTTGGGGTAGAAAGATCTAAACCAGCTTGCATAGCAAAAGATGAATCAGAAATTGGAGGTATATTTCAGAAGAAGAACCGTCCTGTAGCAGTAAAGACTGCTTATCAAGGCAGAGGTCGGCTTGTTATGAGGGATGAAGAGTATTCTCTTGAGGATGATGAAAACAAACATGATCATGTGTTTCCAGCATCATGCCATACAGATTGGTGTCCTCCTCCTTTTGGTCCCAGTAGTTCAAGCAGCAAACTCATGATAACACAACTGTCAGAAACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

339

Amino Acids

37.78

Weight (kDa)

8.95

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca	FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica	MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica	Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis	pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis	RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata	RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora	Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa	Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha	Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana	Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccII	CGCG	1 cut(s)	625
AciI	CCGC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	552, 740
AdeI	CACNNNGTG	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	407, 962
AgsI	TTSAA	1 cut(s)	978
AhdI	GACNNNNNGTC	1 cut(s)	441
AjnI	CCWGG	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AluBI	AGCT	3 cut(s)	383, 621, 767
AluI	AGCT	3 cut(s)	383, 621, 767
Alw26I	GTCTC	2 cut(s)	160, 208
AoxI	GGCC	2 cut(s)	261, 429
ApeKI	GCWGC	2 cut(s)	419, 981
ApoI	RAATTY	2 cut(s)	552, 740
Asp700I	GAANNNNTTC	1 cut(s)	90
AspS9I	GGNCC	4 cut(s)	188, 306, 332, 965
AsuHPI	GGTGA	1 cut(s)	123
AsuII	TTCGAA	1 cut(s)	615
AvaII	GGWCC	4 cut(s)	188, 306, 332, 965
BaeI	ACNNNNGTAYC	4 cut(s)	300, 333, 700, 733
BalI	TGGCCA	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	406, 993
BccI	CCATC	3 cut(s)	253, 603, 655
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	433
BciVI	GTATCC	1 cut(s)	369
BclI	TGATCA	1 cut(s)	913
BcoDI	GTCTC	2 cut(s)	160, 208
BfmI	CTRYAG	1 cut(s)	825
BfuI	GTATCC	1 cut(s)	369
BglII	AGATCT	1 cut(s)	755
BisI	GCNGC	2 cut(s)	420, 982
BlsI	GCNGC	2 cut(s)	421, 983
Bme1390I	CCNGG	1 cut(s)	433
Bme18I	GGWCC	4 cut(s)	188, 306, 332, 965
BmeRI	GACNNNNNGTC	1 cut(s)	441
BmgT120I	GGNCC	4 cut(s)	188, 306, 332, 965
BmiI	GGNNCC	3 cut(s)	21, 307, 967
BmrFI	CCNGG	1 cut(s)	433
BmrI	ACTGGG	1 cut(s)	963
BmsI	GCATC	4 cut(s)	41, 482, 683, 938
BmuI	ACTGGG	1 cut(s)	963
BoxI	GACNNNNGTC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	911
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	3 cut(s)	96, 264, 680
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 962
Bse1I	ACTGG	1 cut(s)	969
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	96, 264, 680
BseGI	GGATG	3 cut(s)	698, 880, 901
BseLI	CCNNNNNNNGG	2 cut(s)	407, 962
BseMII	CTCAG	3 cut(s)	86, 126, 212
BseNI	ACTGG	1 cut(s)	969
BseRI	GAGGAG	1 cut(s)	945
BseXI	GCAGC	2 cut(s)	406, 993
Bsh1236I	CGCG	1 cut(s)	625
BshFI	GGCC	2 cut(s)	263, 431
BshNI	GGYRCC	1 cut(s)	19
BslFI	GGGAC	3 cut(s)	404, 536, 951
BslI	CCNNNNNNNGG	2 cut(s)	407, 962
BsmAI	GTCTC	2 cut(s)	160, 208
BsmFI	GGGAC	3 cut(s)	404, 536, 951
BsnI	GGCC	2 cut(s)	263, 431
Bso31I	GGTCTC	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	615
Bsp143I	GATC	2 cut(s)	755, 913
Bsp19I	CCATGG	2 cut(s)	96, 680
Bsp68I	TCGCGA	1 cut(s)	625
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	2 cut(s)	263, 431
BspCNI	CTCAG	3 cut(s)	85, 127, 211
BspFNI	CGCG	1 cut(s)	625
BspHI	TCATGA	1 cut(s)	990
BspLI	GGNNCC	3 cut(s)	21, 307, 967
BspT104I	TTCGAA	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	969
BssECI	CCNNGG	3 cut(s)	96, 264, 680
BssMI	GATC	2 cut(s)	755, 913
BssT1I	CCWWGG	2 cut(s)	96, 680
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	3 cut(s)	713, 821, 1005
Bst6I	CTCTTC	3 cut(s)	73, 249, 873
BstBI	TTCGAA	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	623, 698, 769
BstDEI	CTNAG	4 cut(s)	72, 126, 135, 198
BstDSI	CCRYGG	3 cut(s)	96, 264, 680
BstF5I	GGATG	3 cut(s)	698, 880, 901
BstFNI	CGCG	1 cut(s)	625
BstKTI	GATC	2 cut(s)	758, 916
BstMAI	GTCTC	2 cut(s)	160, 208
BstMBI	GATC	2 cut(s)	755, 913
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 773
BstNI	CCWGG	1 cut(s)	433
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	1 cut(s)	625
BstV1I	GCAGC	2 cut(s)	406, 993
BstX2I	RGATCY	1 cut(s)	755
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	755
BsuI	GTATCC	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	263, 431
BtgI	CCRYGG	3 cut(s)	96, 264, 680
BtsCI	GGATG	3 cut(s)	698, 880, 901
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	4 cut(s)	293, 540, 718, 727
BtuMI	TCGCGA	1 cut(s)	625
Cac8I	GCNNGC	3 cut(s)	623, 698, 769
CciI	TCATGA	1 cut(s)	990
Cfr13I	GGNCC	4 cut(s)	188, 306, 332, 965
CviAII	CATG	9 cut(s)	97, 104, 460, 602, 681, 911, 917, 933, 991
DdeI	CTNAG	4 cut(s)	72, 126, 135, 198
DpnI	GATC	2 cut(s)	757, 915
DpnII	GATC	2 cut(s)	755, 913
DraIII	CACNNNGTG	1 cut(s)	59
DriI	GACNNNNNGTC	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	3 cut(s)	73, 249, 873
Eam1105I	GACNNNNNGTC	1 cut(s)	441
EarI	CTCTTC	3 cut(s)	73, 249, 873
Eco130I	CCWWGG	2 cut(s)	96, 680
Eco31I	GGTCTC	1 cut(s)	208
Eco32I	GATATC	1 cut(s)	64
Eco47I	GGWCC	4 cut(s)	188, 306, 332, 965
EcoRII	CCWGG	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	96, 680
ErhI	CCWWGG	2 cut(s)	96, 680
FaeI	CATG	9 cut(s)	100, 107, 463, 605, 684, 914, 920, 936, 994
FaqI	GGGAC	3 cut(s)	404, 536, 951
FatI	CATG	9 cut(s)	96, 103, 459, 601, 680, 910, 916, 932, 990
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	913
Fnu4HI	GCNGC	2 cut(s)	420, 982
FokI	GGATG	3 cut(s)	705, 887, 908
Fsp4HI	GCNGC	2 cut(s)	420, 982
GluI	GCNGC	2 cut(s)	420, 982
HaeIII	GGCC	2 cut(s)	263, 431
Hin1II	CATG	9 cut(s)	100, 107, 463, 605, 684, 914, 920, 936, 994
HinfI	GANTC	2 cut(s)	153, 785
HphI	GGTGA	1 cut(s)	123
Hpy166II	GTNNAC	2 cut(s)	188, 309
Hpy188I	TCNGA	3 cut(s)	790, 810, 1009
Hpy188III	TCNNGA	8 cut(s)	39, 54, 74, 167, 347, 624, 890, 991
Hpy8I	GTNNAC	2 cut(s)	188, 309
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	1 cut(s)	594
HpyCH4III	ACNGT	3 cut(s)	713, 821, 1005
HpyCH4V	TGCA	4 cut(s)	532, 601, 696, 771
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 773
HpyF3I	CTNAG	4 cut(s)	72, 126, 135, 198
Hsp92II	CATG	9 cut(s)	100, 107, 463, 605, 684, 914, 920, 936, 994
Ksp22I	TGATCA	1 cut(s)	913
Kzo9I	GATC	2 cut(s)	755, 913
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	2 cut(s)	406, 993
LweI	GCATC	4 cut(s)	41, 482, 683, 938
MaeIII	GTNAC	3 cut(s)	51, 129, 464
MalI	GATC	2 cut(s)	757, 915
MboI	GATC	2 cut(s)	755, 913
MboII	GAAGA	6 cut(s)	60, 266, 697, 823, 826, 890
MflI	RGATCY	1 cut(s)	755
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	6 cut(s)	283, 516, 552, 673, 740, 792
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	2 cut(s)	63, 255
Mox20I	TGGCCA	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	2 cut(s)	141, 203
MslI	CAYNNNNRTG	2 cut(s)	600, 915
Msp20I	TGGCCA	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	433
MvaI	CCWGG	1 cut(s)	433
MvnI	CGCG	1 cut(s)	625
MwoI	GCNNNNNNNGC	2 cut(s)	428, 773
NcoI	CCATGG	2 cut(s)	96, 680
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	2 cut(s)	755, 913
NlaIII	CATG	9 cut(s)	100, 107, 463, 605, 684, 914, 920, 936, 994
NlaIV	GGNNCC	3 cut(s)	21, 307, 967
NmuCI	GTSAC	2 cut(s)	51, 129
NruI	TCGCGA	1 cut(s)	625
NspV	TTCGAA	1 cut(s)	615
PagI	TCATGA	1 cut(s)	990
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	785
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	421, 983
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PshAI	GACNNNNGTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	3 cut(s)	21, 307, 967
PspPI	GGNCC	4 cut(s)	188, 306, 332, 965
PsuI	RGATCY	1 cut(s)	755
RruI	TCGCGA	1 cut(s)	625
RseI	CAYNNNNRTG	2 cut(s)	600, 915
SaqAI	TTAA	2 cut(s)	141, 203
SatI	GCNGC	2 cut(s)	420, 982
Sau3AI	GATC	2 cut(s)	755, 913
Sau96I	GGNCC	4 cut(s)	188, 306, 332, 965
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	433
SfaNI	GCATC	4 cut(s)	41, 482, 683, 938
SfcI	CTRYAG	1 cut(s)	825
SfuI	TTCGAA	1 cut(s)	615
SinI	GGWCC	4 cut(s)	188, 306, 332, 965
SmiMI	CAYNNNNRTG	2 cut(s)	600, 915
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
Sse9I	AATT	6 cut(s)	283, 516, 552, 673, 740, 792
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	2 cut(s)	96, 680
TaaI	ACNGT	3 cut(s)	713, 821, 1005
TaqI	TCGA	2 cut(s)	367, 615
TasI	AATT	6 cut(s)	283, 516, 552, 673, 740, 792
TfiI	GAWTC	1 cut(s)	785
Tru1I	TTAA	2 cut(s)	141, 203
Tru9I	TTAA	2 cut(s)	141, 203
TscAI	CASTG	4 cut(s)	300, 547, 718, 727
TseFI	GTSAC	2 cut(s)	51, 129
TseI	GCWGC	2 cut(s)	419, 981
Tsp45I	GTSAC	2 cut(s)	51, 129
TspDTI	ATGAA	5 cut(s)	618, 657, 798, 891, 915
TspRI	CASTG	4 cut(s)	300, 547, 718, 727
Van91I	CCANNNNNTGG	1 cut(s)	407
VpaK11BI	GGWCC	4 cut(s)	188, 306, 332, 965
XapI	RAATTY	2 cut(s)	552, 740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.