Rorug07G0096000

SAD/SRA domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000355
Physical Location & Seq
Reverse (-)
7534603 .. 7535700
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0096000.1

Sequence Viewer

Length: 543 bp
ATGGAAGCCAAGGCGCTTCAGCCAAACCCACCTGTGAGAACCCAAAAGCTTTTTCTTGGTGCCCAAATTTGCTTGAGGACTGTTGCCATGGCTACTACATTAGCTGCAACATGGATCATGGTCACAAGCAAAGAGTCCACAGAGATTGTTGGCATAACCTTTGATGCTAGATATAGCTACTCATCTGCCTTCAAGTTCTTGGCTTTTGCAAATGCTGTTGTCAGTGCCTGTTGTTTAGTGTCCTTGCTCCTTGTTTTCCTTCTCCATCTCCAAGGCTCAAATCCCAATCACTACTTCCTCTTGTTCCTCCATGATTTGTTCATCATGTGCTTGGTGCTTGCTGGATGCGCGGCTGCAACGGCGATAGGGTTCGTGGGGCGGTATGGGAACAGCCACACCGGTTGGACTCCGATTTGTGATCACTTTGGGAAGTTCTGTCACAGAGTGTTAATATCTGTGATTCTGTCCTACTTGTCCCTCATAATTTTGCTGATGCTTACTGTCAGCTCAGCAATCAAGTCTAGACAGATTCCGGTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
SAD_SRA

Protein Analysis

180

Amino Acids

19.69

Weight (kDa)

9.08

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 20 - 161 1.2e-36 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000355)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22740 AT2G22740 AT2G35160 AT2G35160 AT2G35160 AT2G35160 AT2G35160
fragaria_vesca FvH4_5g20100 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20130 FvH4_5g20150 FvH4_5g25380 FvH4_5g30731 FvH4_5g30740
malus_domestica MD03G1258900.v1.1 MD04G1052400.v1.1 MD11G1279700.v1.1
prunus_persica Prupe.2G064400_v2.0.a1 Prupe.5G057000_v2.0.a1 Prupe.5G057400_v2.0.a1
pyrus_communis pycom03g20690 pycom04g04620 pycom11g24730
rosa_chinensis RchiOBHm_Chr7g0204991 RchiOBHm_Chr7g0205081 RchiOBHm_Chr7g0205121 RchiOBHm_Chr7g0205131 RchiOBHm_Chr7g0215601 RchiOBHm_Chr7g0225631
rosa_laevigata RLG00000001799 RLG00000002623 RLG00000002644 RLG00000003398 RLG00000003403 RLG00000003417 RLG00000034641
rosa_multiflora Rmu_co8235369.1_g000001 Rmu_co8353775.1_g000001 Rmu_co8458607.1_g000001 Rmu_sc0000898.1_g000043 Rmu_sc0000898.1_g000048 Rmu_sc0001072.1_g000001 Rmu_sc0001072.1_g000002 Rmu_sc0003876.1_g000010 Rmu_sc0005112.1_g000021 Rmu_sc0007602.1_g000010 Rmu_sc0009349.1_g000014 Rmu_sc0020855.1_g000001 Rmu_sc0023402.1_g000001 Rmu_sc0024226.1_g000004
rosa_roxburghii Rroxscaffold_3G00233620 Rroxscaffold_3G00244060 Rroxscaffold_3G00252560 Rroxscaffold_3G00252590 Rroxscaffold_3G00252620
rosa_rugosa Rorug07G0086900 Rorug07G0087000 Rorug07G0087000 Rorug07G0087400 Rorug07G0087500 Rorug07G0087600 Rorug07G0087700 Rorug07G0087800 Rorug07G0088100 Rorug07G0095600.1 Rorug07G0095700.1 Rorug07G0095800.1 Rorug07G0095900 Rorug07G0096000 Rorug07G0096100 Rorug07G0155000 Rorug07G0232100
rosa_samantha Rh7AG217900 Rh7AG218400 Rh7AG219000 Rh7AG291200 Rh7AG371700 Rh7BG214800 Rh7BG215000 Rh7BG215500 Rh7BG223800 Rh7BG224400 Rh7BG283300 Rh7BG283800 Rh7BG366000 Rh7CG231100 Rh7CG231600 Rh7CG232000 Rh7CG241100 Rh7CG311200 Rh7CG390400 Rh7DG225200 Rh7DG225900 Rh7DG226400 Rh7DG295000 Rh7DG376800
rosa_wichuraiana Rw0G004730 Rw7G018880 Rw7G018900 Rw7G018920 Rw7G018940 Rw7G018960 Rw7G024860 Rw7G031790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 1 cut(s) 350
AciI CCGC 2 cut(s) 350, 379
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 445
AgeI ACCGGT 1 cut(s) 398
AgsI TTSAA 1 cut(s) 193
AjuI GAANNNNNNNTTGG 4 cut(s) 36, 68, 278, 310
AluBI AGCT 4 cut(s) 49, 104, 177, 507
AluI AGCT 4 cut(s) 49, 104, 177, 507
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 104, 353
ApoI RAATTY 1 cut(s) 66
AsiGI ACCGGT 1 cut(s) 398
AspLEI GCGC 2 cut(s) 16, 350
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 91, 340
BccI CCATC 1 cut(s) 273
BceAI ACGGC 1 cut(s) 375
BclI TGATCA 1 cut(s) 418
BfaI CTAG 2 cut(s) 168, 522
BfoI RGCGCY 1 cut(s) 17
BisI GCNGC 3 cut(s) 105, 351, 354
BlpI GCTNAGC 1 cut(s) 508
BlsI GCNGC 3 cut(s) 106, 352, 355
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 3 cut(s) 154, 335, 483
Bpu1102I GCTNAGC 1 cut(s) 508
BpuEI CTTGAG 1 cut(s) 94
BsaJI CCNNGG 3 cut(s) 9, 87, 271
BsaWI WCCGGW 2 cut(s) 398, 532
Bse118I RCCGGY 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 9, 87, 271
BseGI GGATG 1 cut(s) 350
BseMII CTCAG 1 cut(s) 522
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 2 cut(s) 91, 340
Bsh1236I CGCG 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 59
BshTI ACCGGT 1 cut(s) 398
BsiSI CCGG 2 cut(s) 399, 533
BslFI GGGAC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 114, 418
Bsp1720I GCTNAGC 1 cut(s) 508
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 2 cut(s) 350, 379
BspCNI CTCAG 1 cut(s) 521
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 1 cut(s) 61
BspPI GGATC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 3 cut(s) 9, 87, 271
BssMI GATC 2 cut(s) 114, 418
BssT1I CCWWGG 3 cut(s) 9, 87, 271
Bst4CI ACNGT 2 cut(s) 82, 502
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 508
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 350
BstFNI CGCG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 2 cut(s) 16, 350
BstKTI GATC 2 cut(s) 117, 421
BstMBI GATC 2 cut(s) 114, 418
BstMWI GCNNNNNNNGC 2 cut(s) 347, 359
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 91, 340
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 339
CaiI CAGNNNCTG 1 cut(s) 228
CfoI GCGC 2 cut(s) 16, 350
Cfr10I RCCGGY 1 cut(s) 398
CspAI ACCGGT 1 cut(s) 398
CspCI CAANNNNNGTGG 4 cut(s) 127, 162, 383, 418
CviAII CATG 5 cut(s) 88, 111, 118, 311, 325
DdeI CTNAG 1 cut(s) 508
DpnI GATC 2 cut(s) 116, 420
DpnII GATC 2 cut(s) 114, 418
DraIII CACNNNGTG 1 cut(s) 445
Eco130I CCWWGG 3 cut(s) 9, 87, 271
EcoT14I CCWWGG 3 cut(s) 9, 87, 271
ErhI CCWWGG 3 cut(s) 9, 87, 271
FaeI CATG 5 cut(s) 91, 114, 121, 314, 328
FaiI YATR 9 cut(s) 89, 112, 119, 155, 174, 312, 326, 384, 482
FaqI GGGAC 1 cut(s) 460
FatI CATG 5 cut(s) 87, 110, 117, 310, 324
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 105, 351, 354
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 105, 351, 354
FspBI CTAG 2 cut(s) 168, 522
GlaI GCGC 2 cut(s) 15, 349
GluI GCNGC 3 cut(s) 105, 351, 354
HaeII RGCGCY 1 cut(s) 17
HapII CCGG 2 cut(s) 399, 533
HhaI GCGC 2 cut(s) 16, 350
Hin1II CATG 5 cut(s) 91, 114, 121, 314, 328
Hin6I GCGC 2 cut(s) 14, 348
HinP1I GCGC 2 cut(s) 14, 348
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 4 cut(s) 134, 406, 460, 529
HpaII CCGG 2 cut(s) 399, 533
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 411
Hpy188III TCNNGA 1 cut(s) 522
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 199, 269
HpyCH4III ACNGT 2 cut(s) 82, 502
HpyCH4V TGCA 3 cut(s) 107, 209, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 359
HpyF3I CTNAG 1 cut(s) 508
Hsp92II CATG 5 cut(s) 91, 114, 121, 314, 328
HspAI GCGC 2 cut(s) 14, 348
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 2 cut(s) 114, 418
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 4 cut(s) 45, 241, 327, 412
Lsp1109I GCAGC 2 cut(s) 91, 340
LweI GCATC 3 cut(s) 154, 335, 483
MaeI CTAG 2 cut(s) 168, 522
MaeIII GTNAC 2 cut(s) 121, 437
MalI GATC 2 cut(s) 116, 420
MboI GATC 2 cut(s) 114, 418
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 2 cut(s) 66, 483
MlyI GAGTC 2 cut(s) 143, 400
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 4 cut(s) 69, 308, 317, 488
MseI TTAA 1 cut(s) 449
MspI CCGG 2 cut(s) 399, 533
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 347, 359
NcoI CCATGG 1 cut(s) 87
NdeII GATC 2 cut(s) 114, 418
NlaIII CATG 5 cut(s) 91, 114, 121, 314, 328
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 121, 437
PfeI GAWTC 2 cut(s) 460, 529
PinAI ACCGGT 1 cut(s) 398
PkrI GCNGC 3 cut(s) 106, 352, 355
PleI GAGTC 2 cut(s) 142, 400
PpsI GAGTC 2 cut(s) 142, 400
PspN4I GGNNCC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 3 cut(s) 105, 351, 354
Sau3AI GATC 2 cut(s) 114, 418
SchI GAGTC 2 cut(s) 143, 400
SduI GDGCHC 1 cut(s) 64
SetI ASST 6 cut(s) 34, 51, 106, 161, 179, 509
SfaNI GCATC 3 cut(s) 154, 335, 483
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 2 cut(s) 66, 483
SsiI CCGC 2 cut(s) 350, 379
SspMI CTAG 2 cut(s) 168, 522
StyI CCWWGG 3 cut(s) 9, 87, 271
TaaI ACNGT 2 cut(s) 82, 502
TasI AATT 2 cut(s) 66, 483
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 2 cut(s) 460, 529
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 2 cut(s) 121, 437
TseI GCWGC 2 cut(s) 104, 353
Tsp45I GTSAC 2 cut(s) 121, 437
TspDTI ATGAA 1 cut(s) 310
TspRI CASTG 1 cut(s) 229
XapI RAATTY 1 cut(s) 66
XbaI TCTAGA 1 cut(s) 521
XspI CTAG 2 cut(s) 168, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.