RLG00000001798

RNA polymerase II subunit 5-mediating protein homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
20908283 .. 20914610
6328 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001798

Sequence Viewer

Length: 1110 bp
ATGAAAGGCAAAGGCACGGTGACGCCTCTCTCCTCCGTCTTCTCAGTGGAAGACACACAGAAAGCAGCGAAGCGCGTGCAGGACACGATCGCCCAGAAGGACCTCGAGCTCGACCACCTCCGTGGCTTCGCCGCCGACAACACAGACCTCATTAACCTCGTCGCCCGACTCCCCGAACACCTCCACCACGACATTATGGTTCCGTTTGGGAAGGCAGCATTTTTCCCTGGGCGTTTGGTGCACACCAATGAGTTTATGGTTCTACTGGGAGAAGGTTACTATGCCGAAAGGACCTCGAAGCAAACAGTAGATTTTTTGAACAGGAGAGGGAAGGTATTGGAGTCCCAAGTCGATTCGCTTAAGGCCATGGTTCAGGATCTCAAAGCTGAGGCTTCCTTTTTCAATGCCACCGCCACCGAAGCAGCGGAGGGCCTTGTAGAGATAATGGAAGATTATGAGGAGGAAAGTTCTTCTGATAGAGAATGTGCAGTCAAGGAAGATTATCCTAATAATTCTGGAGCTGTAATTGCAAAACCTGCTGATGATGATGAAGAATTTGCTCGTATGATGGCCAGGATGGATGACCTTGAGAAAGAAGAACGTGAAGCTGAAAGTCAGATGGCACTAAGTGATGAGGATGAGCAAGTTCAGCATGGTTTGCATCAGCTTTCTGATCAGAAATCTCTCCATGGGAATCTCAAAATTTCGGAGGAGTACCAGTCAAGGAAACCCCCAGGGCAGACAAAAGATGGAGTTGCTTCTAATGAAGATAGTTTTACTGATGTGCCAAGTTGTTCGGGTCTGGAATCTATATCTGAAGATAAAGTATCACATGAAAATATATTGGGCCGTGATGTAAAAAGTGTTGCTGAGAAAGATTTGGTGTCTCCGGTAGTTGAGAATGTTCAGACTGTGCCTTTATCAAGAAGTCAGGTTTCTCTTGAAAGTTCAAAACCAAAATTTGACCGGGAGAAAGCTTTTACAGGTTCTATTGTTGAGCACAGTGATAATCTACAGATAAAATCAAGGGAAAAAACTACGACAACATCACAGTCCTCTGCTTCTCAATTTTCAAAGCCAGTTTCAAGATTCAAGATGCAGAGAAAGTAG

Protein Analysis

370

Amino Acids

41.08

Weight (kDa)

4.97

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 29 - 141 3.9e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccII CGCG 1 cut(s) 75
AciI CCGC 3 cut(s) 132, 411, 425
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 3 cut(s) 554, 702, 959
AcuI CTGAAG 1 cut(s) 837
AcyI GRCGYC 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 1 cut(s) 716
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 7 cut(s) 319, 403, 944, 951, 1074, 1086, 1093
AjnI CCWGG 3 cut(s) 226, 572, 733
AleI CACNNNNGTG 1 cut(s) 120
AluBI AGCT 6 cut(s) 109, 386, 521, 608, 667, 977
AluI AGCT 6 cut(s) 109, 386, 521, 608, 667, 977
Alw21I GWGCWC 3 cut(s) 111, 243, 1002
Alw26I GTCTC 1 cut(s) 891
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 4 cut(s) 363, 430, 570, 847
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 65, 215, 422
ApoI RAATTY 3 cut(s) 554, 702, 959
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 4 cut(s) 100, 291, 430, 847
AsuC2I CCSGG 1 cut(s) 968
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 100, 291
BaeGI GKGCMC 1 cut(s) 243
BalI TGGCCA 1 cut(s) 572
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 2 cut(s) 31, 57
Bbv12I GWGCWC 3 cut(s) 111, 243, 1002
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 77, 227, 434
BccI CCATC 4 cut(s) 562, 571, 613, 743
BceAI ACGGC 1 cut(s) 834
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 3 cut(s) 228, 574, 735
BclI TGATCA 1 cut(s) 673
BcnI CCSGG 1 cut(s) 968
BcoDI GTCTC 1 cut(s) 891
BfmI CTRYAG 1 cut(s) 1013
BfrI CTTAAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 544
BisI GCNGC 4 cut(s) 66, 132, 216, 423
BlsI GCNGC 4 cut(s) 67, 133, 217, 424
Bme1390I CCNGG 4 cut(s) 228, 574, 735, 968
Bme18I GGWCC 2 cut(s) 100, 291
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 4 cut(s) 100, 291, 430, 847
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 4 cut(s) 228, 574, 735, 968
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 2 cut(s) 670, 1086
BmuI ACTGGG 1 cut(s) 275
BpiI GAAGAC 2 cut(s) 31, 57
BpmI CTGGAG 1 cut(s) 537
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 968
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 7 cut(s) 121, 226, 227, 366, 688, 733, 734
BsaWI WCCGGW 1 cut(s) 889
BsaXI ACNNNNNCTCC 2 cut(s) 704, 734
Bse1I ACTGG 3 cut(s) 270, 718, 1079
BseBI CCWGG 3 cut(s) 228, 574, 735
BseDI CCNNGG 7 cut(s) 121, 226, 227, 366, 688, 733, 734
BseGI GGATG 3 cut(s) 582, 586, 643
BseMII CTCAG 3 cut(s) 57, 378, 861
BseNI ACTGG 3 cut(s) 270, 718, 1079
BseRI GAGGAG 3 cut(s) 22, 473, 725
BseSI GKGCMC 1 cut(s) 243
BseXI GCAGC 3 cut(s) 77, 227, 434
BsgI GTGCAG 2 cut(s) 98, 507
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 4 cut(s) 365, 432, 572, 849
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 3 cut(s) 111, 243, 1002
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 2 cut(s) 890, 967
BslFI GGGAC 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 891
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 4 cut(s) 365, 432, 572, 849
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 111, 243, 1002
Bsp143I GATC 3 cut(s) 87, 376, 673
Bsp19I CCATGG 2 cut(s) 366, 688
BspACI CCGC 3 cut(s) 132, 411, 425
BspANI GGCC 4 cut(s) 365, 432, 572, 849
BspCNI CTCAG 3 cut(s) 56, 379, 862
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 1 cut(s) 384
BspTI CTTAAG 1 cut(s) 359
BsrI ACTGG 3 cut(s) 270, 718, 1079
BssECI CCNNGG 7 cut(s) 121, 226, 227, 366, 688, 733, 734
BssMI GATC 3 cut(s) 87, 376, 673
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 366, 688
Bst2UI CCWGG 3 cut(s) 228, 574, 735
Bst4CI ACNGT 5 cut(s) 19, 307, 913, 1004, 1053
BstACI GRCGYC 1 cut(s) 23
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 2 cut(s) 536, 658
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 4 cut(s) 43, 387, 626, 870
BstDSI CCRYGG 3 cut(s) 121, 366, 688
BstF5I GGATG 3 cut(s) 582, 586, 643
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 3 cut(s) 90, 379, 676
BstMAI GTCTC 1 cut(s) 891
BstMBI GATC 3 cut(s) 87, 376, 673
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 6 cut(s) 238, 419, 527, 536, 649, 658
BstNI CCWGG 3 cut(s) 228, 574, 735
BstSCI CCNGG 4 cut(s) 226, 572, 733, 966
BstSFI CTRYAG 1 cut(s) 1013
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 3 cut(s) 77, 227, 434
BstV2I GAAGAC 2 cut(s) 31, 57
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 4 cut(s) 365, 432, 572, 849
BtgI CCRYGG 3 cut(s) 121, 366, 688
BtsCI GGATG 3 cut(s) 582, 586, 643
BtsIMutI CAGTG 2 cut(s) 51, 1009
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 77
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 4 cut(s) 100, 291, 430, 847
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 715
CviAII CATG 4 cut(s) 367, 653, 689, 833
CviQI GTAC 1 cut(s) 715
DdeI CTNAG 4 cut(s) 43, 387, 626, 870
DpnI GATC 3 cut(s) 89, 378, 675
DpnII GATC 3 cut(s) 87, 376, 673
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 366, 688
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 100, 291
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 837
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 3 cut(s) 100, 291, 430
EcoRII CCWGG 3 cut(s) 226, 572, 733
EcoT14I CCWWGG 2 cut(s) 366, 688
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 2 cut(s) 366, 688
FaeI CATG 4 cut(s) 370, 656, 692, 836
FaqI GGGAC 1 cut(s) 328
FatI CATG 4 cut(s) 366, 652, 688, 832
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 4 cut(s) 66, 132, 216, 423
FokI GGATG 3 cut(s) 589, 593, 650
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 4 cut(s) 66, 132, 216, 423
GlaI GCGC 1 cut(s) 74
GluI GCNGC 4 cut(s) 66, 132, 216, 423
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 4 cut(s) 365, 432, 572, 849
HapII CCGG 2 cut(s) 890, 967
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 4 cut(s) 370, 656, 692, 836
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 975
HinfI GANTC 6 cut(s) 168, 341, 353, 694, 806, 1089
HpaII CCGG 2 cut(s) 890, 967
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 7 cut(s) 475, 618, 673, 678, 709, 817, 909
Hpy188III TCNNGA 7 cut(s) 374, 516, 803, 924, 941, 1086, 1093
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 4 cut(s) 91, 205, 266, 325
HpyCH4III ACNGT 5 cut(s) 19, 307, 913, 1004, 1053
HpyCH4IV ACGT 1 cut(s) 601
HpyCH4V TGCA 6 cut(s) 79, 241, 488, 530, 661, 1099
HpyF10VI GCNNNNNNNGC 6 cut(s) 238, 419, 527, 536, 649, 658
HpyF3I CTNAG 4 cut(s) 43, 387, 626, 870
HpySE526I ACGT 1 cut(s) 601
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 4 cut(s) 370, 656, 692, 836
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 3 cut(s) 87, 376, 673
LmnI GCTCC 1 cut(s) 518
Lsp1109I GCAGC 3 cut(s) 77, 227, 434
LweI GCATC 2 cut(s) 670, 1086
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 2 cut(s) 19, 275
MalI GATC 3 cut(s) 89, 378, 675
MboI GATC 3 cut(s) 87, 376, 673
MboII GAAGA 9 cut(s) 31, 62, 461, 462, 509, 563, 608, 779, 830
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 3 cut(s) 111, 243, 1002
MlsI TGGCCA 1 cut(s) 572
MluCI AATT 6 cut(s) 511, 525, 554, 702, 959, 1067
MluNI TGGCCA 1 cut(s) 572
MlyI GAGTC 2 cut(s) 162, 350
Mox20I TGGCCA 1 cut(s) 572
MscI TGGCCA 1 cut(s) 572
MseI TTAA 2 cut(s) 153, 360
MslI CAYNNNNRTG 2 cut(s) 120, 246
Msp20I TGGCCA 1 cut(s) 572
MspA1I CMGCKG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 2 cut(s) 890, 967
MspR9I CCNGG 4 cut(s) 228, 574, 735, 968
MvaI CCWGG 3 cut(s) 228, 574, 735
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 6 cut(s) 238, 419, 527, 536, 649, 658
NciI CCSGG 1 cut(s) 968
NcoI CCATGG 2 cut(s) 366, 688
NdeII GATC 3 cut(s) 87, 376, 673
NlaIII CATG 4 cut(s) 370, 656, 692, 836
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 120
PaeR7I CTCGAG 1 cut(s) 104
PasI CCCWGGG 2 cut(s) 227, 734
PfeI GAWTC 4 cut(s) 353, 694, 806, 1089
PkrI GCNGC 4 cut(s) 67, 133, 217, 424
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 2 cut(s) 162, 349
PpsI GAGTC 2 cut(s) 162, 349
PpuMI RGGWCCY 2 cut(s) 100, 291
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 2 cut(s) 100, 291
Psp6I CCWGG 3 cut(s) 226, 572, 733
PspGI CCWGG 3 cut(s) 226, 572, 733
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 4 cut(s) 100, 291, 430, 847
PspPPI RGGWCCY 2 cut(s) 100, 291
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 1 cut(s) 376
PvuI CGATCG 1 cut(s) 90
RsaI GTAC 1 cut(s) 716
RsaNI GTAC 1 cut(s) 715
RseI CAYNNNNRTG 2 cut(s) 120, 246
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 153, 360
SatI GCNGC 4 cut(s) 66, 132, 216, 423
Sau3AI GATC 3 cut(s) 87, 376, 673
Sau96I GGNCC 4 cut(s) 100, 291, 430, 847
SchI GAGTC 2 cut(s) 162, 350
ScrFI CCNGG 4 cut(s) 228, 574, 735, 968
SduI GDGCHC 3 cut(s) 111, 243, 1002
SfaNI GCATC 2 cut(s) 670, 1086
SfcI CTRYAG 1 cut(s) 1013
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 2 cut(s) 100, 291
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 2 cut(s) 120, 246
SmlI CTYRAG 3 cut(s) 104, 359, 587
SmoI CTYRAG 3 cut(s) 104, 359, 587
Sse9I AATT 6 cut(s) 511, 525, 554, 702, 959, 1067
SsiI CCGC 3 cut(s) 132, 411, 425
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 4 cut(s) 226, 572, 733, 966
StyI CCWWGG 2 cut(s) 366, 688
TaaI ACNGT 5 cut(s) 19, 307, 913, 1004, 1053
TaiI ACGT 1 cut(s) 604
TaqI TCGA 4 cut(s) 105, 111, 296, 351
TasI AATT 6 cut(s) 511, 525, 554, 702, 959, 1067
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 4 cut(s) 353, 694, 806, 1089
Tru1I TTAA 2 cut(s) 153, 360
Tru9I TTAA 2 cut(s) 153, 360
TscAI CASTG 2 cut(s) 51, 1009
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 3 cut(s) 65, 215, 422
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 17, 564, 780, 849
TspGWI ACGGA 3 cut(s) 25, 110, 192
TspRI CASTG 2 cut(s) 51, 1009
Vha464I CTTAAG 1 cut(s) 359
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 100, 291
XapI RAATTY 3 cut(s) 554, 702, 959
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.