Rroxscaffold_3G00233610

RNA polymerase II subunit 5-mediating protein homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
19705186 .. 19711846
6661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233610.1

Sequence Viewer

Length: 1155 bp
ATGAGAGGCAAAGGCACCGTGACGCCTCTCTCCTCCGTCTTCTCAGTGGAAGACACGCAGAGAGCAGCGAAGCGCGTGCAGGACACGATCGCCCAGAAGGACCTCGAGCTCGACCACCTCCGTGGCTTCGCCGCCGACAACACAGACCTCATTAACCTCGTCGCCCGACTCCCCGAACACCTCCACCACGACATTATGGTTCCGTTTGGGAAGGCAGCATTTTTCCCTGGGCGTTTGGTGCACACCAATGAGTTTATGGTTCTACTGGGAGAAGGTTACTATGCCGAAAGGACCTCGAAGCAAACAGTAGATATTTTGAACAGGAGAGGGAAGGTATTGGAGTCCCAAGTCGATTCACTTAAGGCCATGGTTCAGGATCTCAAAGCTGAGGCTTCCTTTTTCAATGCTACTGCCACCGAAGCAGCGGTTTATATCTGTATATTTGAACTTGATATTGCTGAAAAACTTGTAAAACAGGAGGGCCTTGTAGAGATAATGGAAGATTTTGAGGAGGAAAGTTCTTCTGAAAGAGAATGTGCACCCAAGCAAGATTATCCTAAAAATTCTAGAGCTGTAATTGCAAAACGTGCTGATGAAGATGAAGAATTTGCTCGTATGATGGCCAGGATGGATGAACTTGAGAAAGAAGAACGTGAAGCTGAAAGTCAGATGGTACAAAGTGATGAGGATGAGCAACTTCAGCATGGTTTGCATCAGCTTTCTGATCAGAAATCTCTCCATGGGAATCTCAAAATTTCGGAGTACCAGTCAAGGAAACCTCCAGAGCAGACAAAAGATGGAGTTGCTTCTAATGAAGATAGTTTTACTGATGTGCCAAGTATATTGTTGGTCTCTTTAGAAGACGATAAAGTATCACATGAAAATATATTGGGTCGTGATGTAAAAAGTGTTGCTGAGAAAGATTTGGTGTCTCCGGTAGTTGAGAATGTTCAGACTGTGCCTTTATCAAGAAGTCAGGTTTCTCTTGAAAGTTCAAAACCAAAATTTGACAGGGAGAAAGCTTTTACAGGTTCTATTGTGGAGCACGCTGATAATCTACAGATAAAATCAAGGGAAAGAACTACGGCTATATCACAGTCCTCTACTTCTCAAGTTTTAAAGCCAGTTTCAAGATTCAAGATGCAGAGAAAGTAG

Protein Analysis

384

Amino Acids

43.28

Weight (kDa)

5.13

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 29 - 141 5.3e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AccII CGCG 1 cut(s) 75
AciI CCGC 2 cut(s) 132, 425
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 4 cut(s) 562, 605, 753, 1004
AcuI CTGAAG 1 cut(s) 683
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 2 cut(s) 675, 764
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 7 cut(s) 319, 403, 446, 989, 996, 1131, 1138
AjnI CCWGG 2 cut(s) 226, 623
AleI CACNNNNGTG 1 cut(s) 120
AluBI AGCT 6 cut(s) 109, 386, 572, 659, 718, 1022
AluI AGCT 6 cut(s) 109, 386, 572, 659, 718, 1022
Alw21I GWGCWC 4 cut(s) 111, 243, 541, 1047
Alw26I GTCTC 2 cut(s) 856, 936
Alw44I GTGCAC 2 cut(s) 239, 537
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 3 cut(s) 363, 481, 621
ApaLI GTGCAC 2 cut(s) 239, 537
ApeKI GCWGC 3 cut(s) 65, 215, 422
ApoI RAATTY 4 cut(s) 562, 605, 753, 1004
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 3 cut(s) 100, 291, 481
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 100, 291
BaeGI GKGCMC 2 cut(s) 243, 541
BalI TGGCCA 1 cut(s) 623
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 3 cut(s) 31, 57, 867
Bbv12I GWGCWC 4 cut(s) 111, 243, 541, 1047
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 77, 227, 434
BccI CCATC 4 cut(s) 613, 622, 664, 791
BceAI ACGGC 1 cut(s) 1101
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 2 cut(s) 228, 625
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 2 cut(s) 856, 936
BfaI CTAG 1 cut(s) 567
BfmI CTRYAG 1 cut(s) 1058
BfrI CTTAAG 1 cut(s) 359
BisI GCNGC 4 cut(s) 66, 132, 216, 423
BlsI GCNGC 4 cut(s) 67, 133, 217, 424
Bme1390I CCNGG 2 cut(s) 228, 625
Bme18I GGWCC 2 cut(s) 100, 291
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 3 cut(s) 100, 291, 481
BmiI GGNNCC 2 cut(s) 16, 201
BmrFI CCNGG 2 cut(s) 228, 625
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 2 cut(s) 721, 1131
BmuI ACTGGG 1 cut(s) 275
BpiI GAAGAC 3 cut(s) 31, 57, 867
BpmI CTGGAG 1 cut(s) 765
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 659, 1095
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 856
BsaJI CCNNGG 5 cut(s) 121, 226, 227, 366, 739
BsaWI WCCGGW 1 cut(s) 934
BsaXI ACNNNNNCTCC 2 cut(s) 752, 782
Bse1I ACTGG 3 cut(s) 270, 766, 1124
BseBI CCWGG 2 cut(s) 228, 625
BseDI CCNNGG 5 cut(s) 121, 226, 227, 366, 739
BseGI GGATG 3 cut(s) 633, 637, 694
BseMII CTCAG 3 cut(s) 57, 378, 906
BseNI ACTGG 3 cut(s) 270, 766, 1124
BseRI GAGGAG 2 cut(s) 22, 524
BseSI GKGCMC 2 cut(s) 243, 541
BseXI GCAGC 3 cut(s) 77, 227, 434
BsgI GTGCAG 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 365, 483, 623
BshNI GGYRCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 4 cut(s) 111, 243, 541, 1047
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 935
BslFI GGGAC 1 cut(s) 328
BsmAI GTCTC 2 cut(s) 856, 936
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 3 cut(s) 365, 483, 623
Bso31I GGTCTC 1 cut(s) 856
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 4 cut(s) 111, 243, 541, 1047
Bsp143I GATC 3 cut(s) 87, 376, 724
Bsp19I CCATGG 2 cut(s) 366, 739
BspACI CCGC 2 cut(s) 132, 425
BspANI GGCC 3 cut(s) 365, 483, 623
BspCNI CTCAG 3 cut(s) 56, 379, 907
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 2 cut(s) 16, 201
BspPI GGATC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 14
BspTI CTTAAG 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 856
BsrI ACTGG 3 cut(s) 270, 766, 1124
BssECI CCNNGG 5 cut(s) 121, 226, 227, 366, 739
BssMI GATC 3 cut(s) 87, 376, 724
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 366, 739
Bst2UI CCWGG 2 cut(s) 228, 625
Bst4CI ACNGT 4 cut(s) 19, 307, 958, 1098
BstACI GRCGYC 1 cut(s) 23
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 2 cut(s) 587, 709
BstC8I GCNNGC 2 cut(s) 77, 1047
BstDEI CTNAG 3 cut(s) 43, 387, 915
BstDSI CCRYGG 3 cut(s) 121, 366, 739
BstF5I GGATG 3 cut(s) 633, 637, 694
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 3 cut(s) 90, 379, 727
BstMAI GTCTC 2 cut(s) 856, 936
BstMBI GATC 3 cut(s) 87, 376, 724
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 6 cut(s) 238, 419, 578, 587, 700, 709
BstNI CCWGG 2 cut(s) 228, 625
BstSCI CCNGG 2 cut(s) 226, 623
BstSFI CTRYAG 1 cut(s) 1058
BstSLI GKGCMC 2 cut(s) 243, 541
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 3 cut(s) 77, 227, 434
BstV2I GAAGAC 3 cut(s) 31, 57, 867
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 3 cut(s) 365, 483, 623
BtgI CCRYGG 3 cut(s) 121, 366, 739
BtsCI GGATG 3 cut(s) 633, 637, 694
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 77, 1047
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 3 cut(s) 100, 291, 481
CseI GACGC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 674, 763
CviAII CATG 4 cut(s) 367, 704, 740, 878
CviQI GTAC 2 cut(s) 674, 763
DdeI CTNAG 3 cut(s) 43, 387, 915
DpnI GATC 3 cut(s) 89, 378, 726
DpnII GATC 3 cut(s) 87, 376, 724
DraI TTTAAA 1 cut(s) 1119
EaeI YGGCCR 1 cut(s) 621
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 366, 739
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 856
Eco47I GGWCC 2 cut(s) 100, 291
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 683
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 3 cut(s) 100, 291, 481
EcoRII CCWGG 2 cut(s) 226, 623
EcoT14I CCWWGG 2 cut(s) 366, 739
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 2 cut(s) 366, 739
FaeI CATG 4 cut(s) 370, 707, 743, 881
FaqI GGGAC 1 cut(s) 328
FatI CATG 4 cut(s) 366, 703, 739, 877
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 4 cut(s) 66, 132, 216, 423
FokI GGATG 3 cut(s) 640, 644, 701
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 4 cut(s) 66, 132, 216, 423
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 74
GluI GCNGC 4 cut(s) 66, 132, 216, 423
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 3 cut(s) 365, 483, 623
HapII CCGG 1 cut(s) 935
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 4 cut(s) 370, 707, 743, 881
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 1020
HinfI GANTC 5 cut(s) 168, 341, 353, 745, 1134
HpaII CCGG 1 cut(s) 935
Hpy166II GTNNAC 2 cut(s) 241, 539
Hpy188I TCNGA 6 cut(s) 526, 669, 724, 729, 760, 954
Hpy188III TCNNGA 8 cut(s) 374, 567, 782, 896, 969, 986, 1131, 1138
Hpy8I GTNNAC 2 cut(s) 241, 539
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 4 cut(s) 91, 205, 266, 325
HpyCH4III ACNGT 4 cut(s) 19, 307, 958, 1098
HpyCH4IV ACGT 2 cut(s) 586, 652
HpyCH4V TGCA 6 cut(s) 79, 241, 539, 581, 712, 1144
HpyF10VI GCNNNNNNNGC 6 cut(s) 238, 419, 578, 587, 700, 709
HpyF3I CTNAG 3 cut(s) 43, 387, 915
HpySE526I ACGT 2 cut(s) 586, 652
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 4 cut(s) 370, 707, 743, 881
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 3 cut(s) 87, 376, 724
LmnI GCTCC 1 cut(s) 1042
Lsp1109I GCAGC 3 cut(s) 77, 227, 434
LweI GCATC 2 cut(s) 721, 1131
MaeI CTAG 1 cut(s) 567
MaeII ACGT 2 cut(s) 586, 652
MaeIII GTNAC 2 cut(s) 19, 275
MalI GATC 3 cut(s) 89, 378, 726
MboI GATC 3 cut(s) 87, 376, 724
MboII GAAGA 9 cut(s) 31, 62, 512, 513, 608, 614, 659, 827, 872
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 4 cut(s) 111, 243, 541, 1047
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 5 cut(s) 562, 576, 605, 753, 1004
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 2 cut(s) 162, 350
Mox20I TGGCCA 1 cut(s) 623
MscI TGGCCA 1 cut(s) 623
MseI TTAA 3 cut(s) 153, 360, 1118
MslI CAYNNNNRTG 2 cut(s) 120, 246
Msp20I TGGCCA 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 1 cut(s) 935
MspR9I CCNGG 2 cut(s) 228, 625
MvaI CCWGG 2 cut(s) 228, 625
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 6 cut(s) 238, 419, 578, 587, 700, 709
NcoI CCATGG 2 cut(s) 366, 739
NdeII GATC 3 cut(s) 87, 376, 724
NlaIII CATG 4 cut(s) 370, 707, 743, 881
NlaIV GGNNCC 2 cut(s) 16, 201
NmuCI GTSAC 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 120
PaeR7I CTCGAG 1 cut(s) 104
PasI CCCWGGG 1 cut(s) 227
PfeI GAWTC 3 cut(s) 353, 745, 1134
PkrI GCNGC 4 cut(s) 67, 133, 217, 424
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 2 cut(s) 162, 349
PpsI GAGTC 2 cut(s) 162, 349
PpuMI RGGWCCY 2 cut(s) 100, 291
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 2 cut(s) 100, 291
Psp6I CCWGG 2 cut(s) 226, 623
PspGI CCWGG 2 cut(s) 226, 623
PspN4I GGNNCC 2 cut(s) 16, 201
PspPI GGNCC 3 cut(s) 100, 291, 481
PspPPI RGGWCCY 2 cut(s) 100, 291
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 1 cut(s) 376
PvuI CGATCG 1 cut(s) 90
RsaI GTAC 2 cut(s) 675, 764
RsaNI GTAC 2 cut(s) 674, 763
RseI CAYNNNNRTG 2 cut(s) 120, 246
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 153, 360, 1118
SatI GCNGC 4 cut(s) 66, 132, 216, 423
Sau3AI GATC 3 cut(s) 87, 376, 724
Sau96I GGNCC 3 cut(s) 100, 291, 481
SchI GAGTC 2 cut(s) 162, 350
ScrFI CCNGG 2 cut(s) 228, 625
SduI GDGCHC 4 cut(s) 111, 243, 541, 1047
SfaNI GCATC 2 cut(s) 721, 1131
SfcI CTRYAG 1 cut(s) 1058
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 2 cut(s) 100, 291
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 2 cut(s) 120, 246
SmlI CTYRAG 4 cut(s) 104, 359, 638, 1110
SmoI CTYRAG 4 cut(s) 104, 359, 638, 1110
Sse9I AATT 5 cut(s) 562, 576, 605, 753, 1004
SsiI CCGC 2 cut(s) 132, 425
SspMI CTAG 1 cut(s) 567
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 226, 623
StyI CCWWGG 2 cut(s) 366, 739
TaaI ACNGT 4 cut(s) 19, 307, 958, 1098
TaiI ACGT 2 cut(s) 589, 655
TaqI TCGA 4 cut(s) 105, 111, 296, 351
TasI AATT 5 cut(s) 562, 576, 605, 753, 1004
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 3 cut(s) 353, 745, 1134
Tru1I TTAA 3 cut(s) 153, 360, 1118
Tru9I TTAA 3 cut(s) 153, 360, 1118
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 3 cut(s) 65, 215, 422
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 5 cut(s) 609, 615, 648, 828, 894
TspGWI ACGGA 3 cut(s) 25, 110, 192
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 359
VneI GTGCAC 2 cut(s) 239, 537
VpaK11BI GGWCC 2 cut(s) 100, 291
XapI RAATTY 4 cut(s) 562, 605, 753, 1004
XbaI TCTAGA 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 104
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.