Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002516

Physical Location & Seq

Genomic Coordinates Reverse (-)

47922715 .. 47929930

Gene Structure 7216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG371600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAGAGGCAAAGGCACGGTGACGCCTCTCTCCTCCGTCTTCTCAGTGGAAGACACACAGAAAGCAGCGAAGCGCGTGCAGGACACGATCGCTCAGAAGGACCTCGAGCTCGACCACCTCCGTGGCTTCGCCGCCGACAACACAGACCTCATTAACCTTGTCGCCCGACTCCCCGAACACCTCCACCACGACATTATGGTTCCGTTTGGGAAGGCAGCATTTTTCCCTGGGCGTTTGGTGCACACCAATGAGTTTATGGTTCTACTGGGTGAAGGTTACTATGCCGAAAGGACCTCGAAGCAAACAGTAGATATTTTGAACAGAAGAGGGAAGGTATTGGAGTCTCAAGTTGATTCGCTTAAGGCCATGGTTCAGGATCTCAAAGCTGAGGCTTCCTTTTTCAATGCTACCGCCTCCGAAGCAGCGGAAGGCCTTGTAGAGATAATGGAAGATTATGAGGAGGAAAGTTCTTCTGATAGAGAATGTGCAGTCAAGCAAGATTATCCTAATAATTCTGGAGCTGTAATTGCAAAACCTGCTGATGAAGATGAAGAATTTGCTCGTATGATGGCCAGGATGGATGAACTTGAGAAAGAAGAACGTGAAGCTGAAAGTCAGATGGCACAAAGTGATGAGGATGAGCAAGTTCAGCATGGTTTGCATCAGCTTTCTGATCAGAAATCTCTCCATGGGAATCTCAAAATTTCGGAGTACCAGTCAAGGAAACCTCCAGAGCAGACAAAAGATGGAGTTGCTTCTAATGAAGATAGTTTTACTGATGTGCCAAGTAGGAAGCATATGGAGCGAGTGTTGAAAATCTTTTTCGAAAATGTATGGCCACTCTCTTTTGAAATCATATTATTTCATCCTCATGAGCTATTTCAACTCTTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006355 GO:0006357 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016591 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0030234 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035303 GO:0035305 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0080090 GO:0098772 GO:0140110 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

298

Amino Acids

33.85

Weight (kDa)

4.85

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	29 - 142	1.1e-20	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03760
fragaria_vesca	FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750
malus_domestica	MD09G1244900.v1.1
prunus_persica	Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1
pyrus_communis	pycom09g16290
rosa_chinensis	RchiOBHm_Chr4g0410421 RchiOBHm_Chr7g0225641
rosa_laevigata	RLG00000001798 RLG00000033455
rosa_multiflora	Rmu_sc0003876.1_g000009
rosa_roxburghii	Rroxscaffold_1G00046790 Rroxscaffold_3G00233610 Rroxscaffold_3G00255650 Rroxscaffold_4G00302570
rosa_rugosa	Rorug05G0137300 Rorug07G0232100 Rorug07G0232100
rosa_samantha	Rh4AG006500 Rh4AG160600 Rh4CG172700 Rh7AG371600 Rh7BG366100 Rh7CG390300 Rh7DG377000
rosa_wichuraiana	Rw7G031800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	544
AccII	CGCG	1 cut(s)	75
AciI	CCGC	3 cut(s)	132, 411, 425
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	2 cut(s)	570, 836
AcsI	RAATTY	2 cut(s)	554, 702
AcyI	GRCGYC	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	629
AfaI	GTAC	1 cut(s)	713
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	5 cut(s)	319, 403, 814, 851, 884
AjnI	CCWGG	2 cut(s)	226, 572
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	6 cut(s)	109, 386, 521, 608, 667, 877
AluI	AGCT	6 cut(s)	109, 386, 521, 608, 667, 877
Alw21I	GWGCWC	2 cut(s)	111, 243
Alw26I	GTCTC	1 cut(s)	348
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	384
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	4 cut(s)	363, 430, 570, 836
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	65, 215, 422
ApoI	RAATTY	2 cut(s)	554, 702
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	100, 291
AsuHPI	GGTGA	2 cut(s)	31, 281
AsuII	TTCGAA	1 cut(s)	825
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	100, 291
BaeGI	GKGCMC	1 cut(s)	243
BalI	TGGCCA	2 cut(s)	572, 838
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	2 cut(s)	31, 57
Bbv12I	GWGCWC	2 cut(s)	111, 243
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	77, 227, 434
BccI	CCATC	4 cut(s)	562, 571, 613, 740
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	2 cut(s)	228, 574
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	348
BfrI	CTTAAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	544
BisI	GCNGC	4 cut(s)	66, 132, 216, 423
BlsI	GCNGC	4 cut(s)	67, 133, 217, 424
Bme1390I	CCNGG	2 cut(s)	228, 574
Bme18I	GGWCC	2 cut(s)	100, 291
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	100, 291
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	228, 574
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	275
BpiI	GAAGAC	2 cut(s)	31, 57
BpmI	CTGGAG	2 cut(s)	537, 714
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	825
BpuEI	CTTGAG	2 cut(s)	330, 608
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	5 cut(s)	121, 226, 227, 366, 688
BsaXI	ACNNNNNCTCC	4 cut(s)	701, 731, 794, 824
Bse1I	ACTGG	2 cut(s)	270, 715
BseBI	CCWGG	2 cut(s)	228, 574
BseDI	CCNNGG	5 cut(s)	121, 226, 227, 366, 688
BseGI	GGATG	4 cut(s)	582, 586, 643, 865
BseMII	CTCAG	3 cut(s)	57, 107, 378
BseNI	ACTGG	2 cut(s)	270, 715
BseRI	GAGGAG	2 cut(s)	22, 473
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	77, 227, 434
BsgI	GTGCAG	2 cut(s)	98, 507
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	4 cut(s)	365, 432, 572, 838
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	111, 243
BsiHKCI	CYCGRG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	4 cut(s)	365, 432, 572, 838
BsoBI	CYCGRG	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	825
Bsp1286I	GDGCHC	2 cut(s)	111, 243
Bsp143I	GATC	3 cut(s)	87, 376, 673
Bsp19I	CCATGG	2 cut(s)	366, 688
BspACI	CCGC	3 cut(s)	132, 411, 425
BspANI	GGCC	4 cut(s)	365, 432, 572, 838
BspCNI	CTCAG	3 cut(s)	56, 106, 379
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	544
BspPI	GGATC	1 cut(s)	384
BspT104I	TTCGAA	1 cut(s)	825
BspTI	CTTAAG	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	270, 715
BssECI	CCNNGG	5 cut(s)	121, 226, 227, 366, 688
BssMI	GATC	3 cut(s)	87, 376, 673
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	2 cut(s)	366, 688
Bst2UI	CCWGG	2 cut(s)	228, 574
Bst4CI	ACNGT	2 cut(s)	19, 307
Bst6I	CTCTTC	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	2 cut(s)	536, 658
BstBI	TTCGAA	1 cut(s)	825
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	43, 93, 387
BstDSI	CCRYGG	3 cut(s)	121, 366, 688
BstF5I	GGATG	4 cut(s)	582, 586, 643, 865
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	3 cut(s)	90, 379, 676
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	3 cut(s)	87, 376, 673
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	7 cut(s)	238, 419, 527, 536, 649, 658, 802
BstNI	CCWGG	2 cut(s)	228, 574
BstSCI	CCNGG	2 cut(s)	226, 572
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	3 cut(s)	77, 227, 434
BstV2I	GAAGAC	2 cut(s)	31, 57
BstX2I	RGATCY	1 cut(s)	376
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	4 cut(s)	365, 432, 572, 838
BtgI	CCRYGG	3 cut(s)	121, 366, 688
BtsCI	GGATG	4 cut(s)	582, 586, 643, 865
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	1 cut(s)	77
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	100, 291
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	4 cut(s)	367, 653, 689, 872
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	3 cut(s)	43, 93, 387
DpnI	GATC	3 cut(s)	89, 378, 675
DpnII	GATC	3 cut(s)	87, 376, 673
DraIII	CACNNNGTG	1 cut(s)	629
EaeI	YGGCCR	2 cut(s)	570, 836
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	366, 688
Eco147I	AGGCCT	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	100, 291
Eco53kI	GAGCTC	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	2 cut(s)	100, 291
EcoRII	CCWGG	2 cut(s)	226, 572
EcoT14I	CCWWGG	2 cut(s)	366, 688
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	2 cut(s)	366, 688
FaeI	CATG	4 cut(s)	370, 656, 692, 875
FatI	CATG	4 cut(s)	366, 652, 688, 871
FauNDI	CATATG	1 cut(s)	798
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	4 cut(s)	66, 132, 216, 423
FokI	GGATG	4 cut(s)	589, 593, 650, 852
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	4 cut(s)	66, 132, 216, 423
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	4 cut(s)	66, 132, 216, 423
GsuI	CTGGAG	2 cut(s)	537, 714
HaeIII	GGCC	4 cut(s)	365, 432, 572, 838
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	4 cut(s)	370, 656, 692, 875
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	168, 341, 353, 694
HphI	GGTGA	2 cut(s)	31, 281
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	7 cut(s)	96, 418, 475, 618, 673, 678, 709
Hpy188III	TCNNGA	4 cut(s)	374, 516, 731, 872
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	5 cut(s)	91, 205, 266, 325, 422
HpyCH4III	ACNGT	2 cut(s)	19, 307
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	5 cut(s)	79, 241, 488, 530, 661
HpyF10VI	GCNNNNNNNGC	7 cut(s)	238, 419, 527, 536, 649, 658, 802
HpyF3I	CTNAG	3 cut(s)	43, 93, 387
HpySE526I	ACGT	1 cut(s)	601
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	370, 656, 692, 875
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	3 cut(s)	87, 376, 673
LmnI	GCTCC	2 cut(s)	518, 802
Lsp1109I	GCAGC	3 cut(s)	77, 227, 434
LweI	GCATC	1 cut(s)	670
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	2 cut(s)	19, 275
MalI	GATC	3 cut(s)	89, 378, 675
MboI	GATC	3 cut(s)	87, 376, 673
MboII	GAAGA	9 cut(s)	31, 62, 336, 461, 462, 557, 563, 608, 776
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	2 cut(s)	111, 243
MlsI	TGGCCA	2 cut(s)	572, 838
MluCI	AATT	4 cut(s)	511, 525, 554, 702
MluNI	TGGCCA	2 cut(s)	572, 838
MlyI	GAGTC	2 cut(s)	162, 350
Mox20I	TGGCCA	2 cut(s)	572, 838
MscI	TGGCCA	2 cut(s)	572, 838
MseI	TTAA	2 cut(s)	153, 360
MslI	CAYNNNNRTG	3 cut(s)	120, 246, 870
Msp20I	TGGCCA	2 cut(s)	572, 838
MspA1I	CMGCKG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	228, 574
MvaI	CCWGG	2 cut(s)	228, 574
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	7 cut(s)	238, 419, 527, 536, 649, 658, 802
NcoI	CCATGG	2 cut(s)	366, 688
NdeI	CATATG	1 cut(s)	798
NdeII	GATC	3 cut(s)	87, 376, 673
NlaIII	CATG	4 cut(s)	370, 656, 692, 875
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	825
OliI	CACNNNNGTG	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	871
PasI	CCCWGGG	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	353, 694
PkrI	GCNGC	4 cut(s)	67, 133, 217, 424
Ple19I	CGATCG	1 cut(s)	90
PleI	GAGTC	2 cut(s)	162, 349
PpsI	GAGTC	2 cut(s)	162, 349
PpuMI	RGGWCCY	2 cut(s)	100, 291
Psp124BI	GAGCTC	1 cut(s)	111
Psp5II	RGGWCCY	2 cut(s)	100, 291
Psp6I	CCWGG	2 cut(s)	226, 572
PspGI	CCWGG	2 cut(s)	226, 572
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	100, 291
PspPPI	RGGWCCY	2 cut(s)	100, 291
PspXI	VCTCGAGB	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	376
PvuI	CGATCG	1 cut(s)	90
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	3 cut(s)	120, 246, 870
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	153, 360
SatI	GCNGC	4 cut(s)	66, 132, 216, 423
Sau3AI	GATC	3 cut(s)	87, 376, 673
Sau96I	GGNCC	2 cut(s)	100, 291
SchI	GAGTC	2 cut(s)	162, 350
ScrFI	CCNGG	2 cut(s)	228, 574
SduI	GDGCHC	2 cut(s)	111, 243
SfaNI	GCATC	1 cut(s)	670
Sfr274I	CTCGAG	1 cut(s)	104
SfuI	TTCGAA	1 cut(s)	825
SinI	GGWCC	2 cut(s)	100, 291
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	3 cut(s)	120, 246, 870
SmlI	CTYRAG	4 cut(s)	104, 345, 359, 587
SmoI	CTYRAG	4 cut(s)	104, 345, 359, 587
Sse9I	AATT	4 cut(s)	511, 525, 554, 702
SseBI	AGGCCT	1 cut(s)	432
SsiI	CCGC	3 cut(s)	132, 411, 425
SstI	GAGCTC	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	226, 572
StyI	CCWWGG	2 cut(s)	366, 688
TaaI	ACNGT	2 cut(s)	19, 307
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	4 cut(s)	105, 111, 296, 825
TasI	AATT	4 cut(s)	511, 525, 554, 702
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	2 cut(s)	353, 694
Tru1I	TTAA	2 cut(s)	153, 360
Tru9I	TTAA	2 cut(s)	153, 360
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	3 cut(s)	65, 215, 422
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	5 cut(s)	558, 564, 597, 777, 854
TspGWI	ACGGA	3 cut(s)	25, 110, 192
TspRI	CASTG	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	359
VneI	GTGCAC	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	100, 291
XapI	RAATTY	2 cut(s)	554, 702
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.