FvH4_5g30750

RNA polymerase II subunit 5-mediating protein homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
21647127 .. 21654050
6924 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30750.t5

Sequence Viewer

Length: 1107 bp
ATGAAAGGCAAGGGGACGGTGACGCCTCTCTCCTCCGTCTTCTCAGTTGAAGACACTCAGAAAGCAGCGCAGCGCGTGCATGACACGATCGCCCAGAAAGACCTGGAGCTCGAACGCCTCCTTGGCTTCGTCGCCGACAACACTGACCTCATTAACCTCGTCGGCCGCCTCCCCGATCACCTCCACCACGACATTATGGTTCCGTTTGGGAAGGCAGCATTTTTCCCTGGGCGTTTGGTGCACACCAATGAGTTCATGGTTCTACTGGGAGAAGGTTACTATGCCGAAAGGACGTCGAAGCAAACAGTAGATATTTTGAACAGAAGAGGGAAGGTGTTGGAGTCCCAACTCGATTCGCTTAAGGCCATGGTTCAGGATCTCAAAGCTGAGGCTTCCTTTTTCAATGCTACCGCCTCCGAAGCAGCGGAGGGCCTTGTAGAGATTATGGAAGATTATGAGGAGGAAAGTTCTTCTGACAGAGAAAGTGCACTGAAGCAAGATTCTCCTAAGAATTCTGGAACTGTCATTACAGAACATGTGGATGAAGATGAAGAATTTGCTCGTATGATGGCTAGGATGGATGAACTTGAGAAAGAAGAACGTGAAGCTGAAAGTCAGATGTCACAAAGTGATGAGAATGAGGAAGTTCAGCTCGGTTTGCATCAACTTTCCGATCAAAAATCTCTCCATGGGAATCTGAAAACCTCGGGGTCCCAGTCCAGGAAATCTCCACAGCAAACAAAAGATGGAATTGCTTCTAACAAAGATAGTTTTACTGATGAGCCAAGTTGTTCCGGTCTGGAAACAATATCTGCAGATAAATTGTCACATGGAAATATATTGGCTCGTAATGTAAAAAGTGTTGCTGAGAAAGATTTTGTGTCTCCGGTAGTTGAGAACTTTCAGACTGTGCCCTCATCAAGAAGTCAGGTTCCTCTCGAGAGTTCAAAACCGAAATTTGAGAGAGAGAAAGCTTTTACAGGTTCTATTGTTGAGCACGCTGATAATCTACAGATAAAATCAAGGGAAAGAACTACAGCTACATCACAGTCCTCTGCTTCTCAAGTTTCAAAGCCAGTTTCAAGATTCAAGATGCAGAGAAAATAG

Protein Analysis

369

Amino Acids

40.88

Weight (kDa)

5.19

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 4 - 86 2.8e-17 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 296
AccII CGCG 1 cut(s) 75
AciI CCGC 3 cut(s) 166, 411, 425
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 3 cut(s) 511, 554, 956
AcuI CTGAAG 1 cut(s) 512
AcyI GRCGYC 2 cut(s) 23, 293
AdeI CACNNNGTG 1 cut(s) 629
AfiI CCNNNNNNNGG 1 cut(s) 720
AflII CTTAAG 1 cut(s) 359
AflIII ACRYGT 1 cut(s) 535
AgsI TTSAA 7 cut(s) 50, 319, 403, 948, 1071, 1083, 1090
AjnI CCWGG 3 cut(s) 102, 226, 719
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 6 cut(s) 109, 386, 608, 652, 974, 1040
AluI AGCT 6 cut(s) 109, 386, 608, 652, 974, 1040
Alw21I GWGCWC 4 cut(s) 111, 243, 490, 999
Alw26I GTCTC 1 cut(s) 888
Alw44I GTGCAC 2 cut(s) 239, 486
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 2 cut(s) 706, 938
AoxI GGCC 3 cut(s) 163, 363, 430
ApaLI GTGCAC 2 cut(s) 239, 486
ApeKI GCWGC 4 cut(s) 65, 70, 215, 422
ApoI RAATTY 3 cut(s) 511, 554, 956
Asp700I GAANNNNTTC 1 cut(s) 754
AspLEI GCGC 2 cut(s) 70, 75
AspS9I GGNCC 2 cut(s) 430, 711
AsuHPI GGTGA 2 cut(s) 31, 170
AvaI CYCGRG 2 cut(s) 706, 938
AvaII GGWCC 1 cut(s) 711
BaeGI GKGCMC 3 cut(s) 243, 490, 915
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 2 cut(s) 31, 57
Bbv12I GWGCWC 4 cut(s) 111, 243, 490, 999
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 4 cut(s) 77, 82, 227, 434
BccI CCATC 3 cut(s) 562, 571, 740
BciT130I CCWGG 3 cut(s) 104, 228, 721
BcoDI GTCTC 1 cut(s) 888
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 3 cut(s) 813, 1010, 1035
BfrI CTTAAG 1 cut(s) 359
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 5 cut(s) 66, 71, 166, 216, 423
BlsI GCNGC 5 cut(s) 67, 72, 167, 217, 424
Bme1390I CCNGG 3 cut(s) 104, 228, 721
Bme18I GGWCC 1 cut(s) 711
BmeT110I CYCGRG 2 cut(s) 706, 938
BmgT120I GGNCC 2 cut(s) 430, 711
BmiI GGNNCC 4 cut(s) 201, 712, 713, 933
BmrFI CCNGG 3 cut(s) 104, 228, 721
BmrI ACTGGG 2 cut(s) 275, 709
BmsI GCATC 2 cut(s) 670, 1083
BmuI ACTGGG 2 cut(s) 275, 709
BpiI GAAGAC 2 cut(s) 31, 57
BpmI CTGGAG 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 2 cut(s) 608, 1047
BsaHI GRCGYC 2 cut(s) 23, 293
BsaJI CCNNGG 6 cut(s) 121, 226, 227, 366, 688, 705
BsaWI WCCGGW 2 cut(s) 794, 886
Bsc4I CCNNNNNNNGG 1 cut(s) 720
Bse1I ACTGG 3 cut(s) 270, 715, 1076
BseBI CCWGG 3 cut(s) 104, 228, 721
BseDI CCNNGG 6 cut(s) 121, 226, 227, 366, 688, 705
BseGI GGATG 3 cut(s) 547, 582, 586
BseLI CCNNNNNNNGG 1 cut(s) 720
BseMII CTCAG 4 cut(s) 57, 71, 378, 858
BseNI ACTGG 3 cut(s) 270, 715, 1076
BseRI GAGGAG 2 cut(s) 22, 473
BseSI GKGCMC 3 cut(s) 243, 490, 915
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 4 cut(s) 77, 82, 227, 434
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 2 cut(s) 90, 166
BshFI GGCC 3 cut(s) 165, 365, 432
BsiEI CGRYCG 2 cut(s) 90, 166
BsiHKAI GWGCWC 4 cut(s) 111, 243, 490, 999
BsiHKCI CYCGRG 2 cut(s) 706, 938
BsiSI CCGG 2 cut(s) 795, 887
BslFI GGGAC 3 cut(s) 28, 328, 697
BslI CCNNNNNNNGG 1 cut(s) 720
BsmAI GTCTC 1 cut(s) 888
BsmFI GGGAC 3 cut(s) 28, 328, 697
BsnI GGCC 3 cut(s) 165, 365, 432
BsoBI CYCGRG 2 cut(s) 706, 938
Bsp1286I GDGCHC 5 cut(s) 111, 243, 490, 915, 999
Bsp143I GATC 4 cut(s) 87, 175, 376, 673
Bsp19I CCATGG 2 cut(s) 366, 688
BspACI CCGC 3 cut(s) 166, 411, 425
BspANI GGCC 3 cut(s) 165, 365, 432
BspCNI CTCAG 4 cut(s) 56, 70, 379, 859
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 4 cut(s) 201, 712, 713, 933
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 1 cut(s) 384
BspTI CTTAAG 1 cut(s) 359
BsrI ACTGG 3 cut(s) 270, 715, 1076
BssECI CCNNGG 6 cut(s) 121, 226, 227, 366, 688, 705
BssMI GATC 4 cut(s) 87, 175, 376, 673
BssNI GRCGYC 2 cut(s) 23, 293
BssT1I CCWWGG 3 cut(s) 121, 366, 688
Bst2UI CCWGG 3 cut(s) 104, 228, 721
Bst4CI ACNGT 5 cut(s) 19, 307, 523, 910, 1050
Bst6I CTCTTC 1 cut(s) 319
BstACI GRCGYC 2 cut(s) 23, 293
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 77, 999
BstDEI CTNAG 5 cut(s) 43, 57, 387, 507, 867
BstDSI CCRYGG 2 cut(s) 366, 688
BstF5I GGATG 3 cut(s) 547, 582, 586
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 2 cut(s) 70, 75
BstKTI GATC 4 cut(s) 90, 178, 379, 676
BstMAI GTCTC 1 cut(s) 888
BstMBI GATC 4 cut(s) 87, 175, 376, 673
BstMCI CGRYCG 2 cut(s) 90, 166
BstMWI GCNNNNNNNGC 5 cut(s) 76, 123, 238, 419, 658
BstNI CCWGG 3 cut(s) 104, 228, 721
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 3 cut(s) 102, 226, 719
BstSFI CTRYAG 3 cut(s) 813, 1010, 1035
BstSLI GKGCMC 3 cut(s) 243, 490, 915
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 4 cut(s) 77, 82, 227, 434
BstV2I GAAGAC 2 cut(s) 31, 57
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BstZI CGGCCG 1 cut(s) 163
BsuRI GGCC 3 cut(s) 165, 365, 432
BtgI CCRYGG 2 cut(s) 366, 688
BtsCI GGATG 3 cut(s) 547, 582, 586
BtsIMutI CAGTG 2 cut(s) 141, 488
Cac8I GCNNGC 2 cut(s) 77, 999
CfoI GCGC 2 cut(s) 70, 75
Cfr13I GGNCC 2 cut(s) 430, 711
CseI GACGC 1 cut(s) 31
CviAII CATG 6 cut(s) 80, 256, 367, 536, 689, 830
DdeI CTNAG 5 cut(s) 43, 57, 387, 507, 867
DpnI GATC 4 cut(s) 89, 177, 378, 675
DpnII GATC 4 cut(s) 87, 175, 376, 673
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 163
EagI CGGCCG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
Ecl136II GAGCTC 1 cut(s) 109
EclXI CGGCCG 1 cut(s) 163
Eco130I CCWWGG 3 cut(s) 121, 366, 688
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 711
Eco52I CGGCCG 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 512
Eco88I CYCGRG 2 cut(s) 706, 938
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 2 cut(s) 430, 711
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 3 cut(s) 102, 226, 719
EcoT14I CCWWGG 3 cut(s) 121, 366, 688
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 3 cut(s) 121, 366, 688
FaeI CATG 6 cut(s) 83, 259, 370, 539, 692, 833
FaqI GGGAC 3 cut(s) 28, 328, 697
FatI CATG 6 cut(s) 79, 255, 366, 535, 688, 829
Fnu4HI GCNGC 5 cut(s) 66, 71, 166, 216, 423
FokI GGATG 3 cut(s) 554, 589, 593
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 5 cut(s) 66, 71, 166, 216, 423
FspBI CTAG 1 cut(s) 573
GlaI GCGC 2 cut(s) 69, 74
GluI GCNGC 5 cut(s) 66, 71, 166, 216, 423
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 3 cut(s) 165, 365, 432
HapII CCGG 2 cut(s) 795, 887
HgaI GACGC 1 cut(s) 31
HhaI GCGC 2 cut(s) 70, 75
Hin1I GRCGYC 2 cut(s) 23, 293
Hin1II CATG 6 cut(s) 83, 259, 370, 539, 692, 833
Hin6I GCGC 2 cut(s) 68, 73
HinP1I GCGC 2 cut(s) 68, 73
HindIII AAGCTT 1 cut(s) 972
HinfI GANTC 5 cut(s) 341, 353, 500, 694, 1086
HpaII CCGG 2 cut(s) 795, 887
HphI GGTGA 2 cut(s) 31, 170
Hpy166II GTNNAC 2 cut(s) 241, 488
Hpy188I TCNGA 7 cut(s) 60, 418, 475, 618, 673, 699, 906
Hpy188III TCNNGA 8 cut(s) 374, 516, 800, 921, 938, 940, 1083, 1090
Hpy8I GTNNAC 2 cut(s) 241, 488
Hpy99I CGWCG 3 cut(s) 134, 164, 298
HpyAV CCTTC 3 cut(s) 205, 266, 325
HpyCH4III ACNGT 5 cut(s) 19, 307, 523, 910, 1050
HpyCH4IV ACGT 2 cut(s) 293, 601
HpyCH4V TGCA 6 cut(s) 79, 241, 488, 661, 815, 1096
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 123, 238, 419, 658
HpyF3I CTNAG 5 cut(s) 43, 57, 387, 507, 867
HpySE526I ACGT 2 cut(s) 293, 601
Hsp92I GRCGYC 2 cut(s) 23, 293
Hsp92II CATG 6 cut(s) 83, 259, 370, 539, 692, 833
HspAI GCGC 2 cut(s) 68, 73
KflI GGGWCCC 1 cut(s) 711
Kzo9I GATC 4 cut(s) 87, 175, 376, 673
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 4 cut(s) 77, 82, 227, 434
LweI GCATC 2 cut(s) 670, 1083
MaeI CTAG 1 cut(s) 573
MaeII ACGT 2 cut(s) 293, 601
MaeIII GTNAC 4 cut(s) 19, 275, 621, 825
MalI GATC 4 cut(s) 89, 177, 378, 675
MboI GATC 4 cut(s) 87, 175, 376, 673
MboII GAAGA 8 cut(s) 31, 62, 336, 461, 462, 557, 563, 608
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 5 cut(s) 111, 243, 490, 915, 999
MluCI AATT 5 cut(s) 511, 554, 750, 821, 956
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 754
MseI TTAA 2 cut(s) 153, 360
MslI CAYNNNNRTG 2 cut(s) 246, 540
MspA1I CMGCKG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 2 cut(s) 795, 887
MspR9I CCNGG 3 cut(s) 104, 228, 721
MteI GCGCNGCGC 1 cut(s) 71
MvaI CCWGG 3 cut(s) 104, 228, 721
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 5 cut(s) 76, 123, 238, 419, 658
NcoI CCATGG 2 cut(s) 366, 688
NdeII GATC 4 cut(s) 87, 175, 376, 673
NlaIII CATG 6 cut(s) 83, 259, 370, 539, 692, 833
NlaIV GGNNCC 4 cut(s) 201, 712, 713, 933
NmuCI GTSAC 3 cut(s) 19, 621, 825
NspI RCATGY 1 cut(s) 539
PaeR7I CTCGAG 1 cut(s) 938
PasI CCCWGGG 1 cut(s) 227
PciI ACATGT 1 cut(s) 535
PdmI GAANNNNTTC 1 cut(s) 754
PfeI GAWTC 4 cut(s) 353, 500, 694, 1086
PfoI TCCNGGA 1 cut(s) 719
PkrI GCNGC 5 cut(s) 67, 72, 167, 217, 424
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PpuMI RGGWCCY 1 cut(s) 711
PscI ACATGT 1 cut(s) 535
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 711
Psp6I CCWGG 3 cut(s) 102, 226, 719
PspGI CCWGG 3 cut(s) 102, 226, 719
PspN4I GGNNCC 4 cut(s) 201, 712, 713, 933
PspPI GGNCC 2 cut(s) 430, 711
PspPPI RGGWCCY 1 cut(s) 711
PsrI GAACNNNNNNTAC 4 cut(s) 511, 543, 1024, 1056
PstI CTGCAG 1 cut(s) 817
PsuI RGATCY 1 cut(s) 376
PvuI CGATCG 1 cut(s) 90
RseI CAYNNNNRTG 2 cut(s) 246, 540
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 153, 360
SatI GCNGC 5 cut(s) 66, 71, 166, 216, 423
Sau3AI GATC 4 cut(s) 87, 175, 376, 673
Sau96I GGNCC 2 cut(s) 430, 711
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 3 cut(s) 104, 228, 721
SduI GDGCHC 5 cut(s) 111, 243, 490, 915, 999
SfaNI GCATC 2 cut(s) 670, 1083
SfcI CTRYAG 3 cut(s) 813, 1010, 1035
Sfr274I CTCGAG 1 cut(s) 938
SinI GGWCC 1 cut(s) 711
SlaI CTCGAG 1 cut(s) 938
SmiMI CAYNNNNRTG 2 cut(s) 246, 540
SmlI CTYRAG 4 cut(s) 359, 587, 938, 1062
SmoI CTYRAG 4 cut(s) 359, 587, 938, 1062
Sse9I AATT 5 cut(s) 511, 554, 750, 821, 956
SsiI CCGC 3 cut(s) 166, 411, 425
SspMI CTAG 1 cut(s) 573
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 102, 226, 719
StyI CCWWGG 3 cut(s) 121, 366, 688
TaaI ACNGT 5 cut(s) 19, 307, 523, 910, 1050
TaiI ACGT 2 cut(s) 296, 604
TaqI TCGA 4 cut(s) 111, 296, 351, 939
TasI AATT 5 cut(s) 511, 554, 750, 821, 956
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 4 cut(s) 353, 500, 694, 1086
Tru1I TTAA 2 cut(s) 153, 360
Tru9I TTAA 2 cut(s) 153, 360
TscAI CASTG 2 cut(s) 148, 495
TseFI GTSAC 3 cut(s) 19, 621, 825
TseI GCWGC 4 cut(s) 65, 70, 215, 422
Tsp45I GTSAC 3 cut(s) 19, 621, 825
TspDTI ATGAA 5 cut(s) 17, 244, 558, 564, 597
TspGWI ACGGA 2 cut(s) 25, 192
TspRI CASTG 2 cut(s) 148, 495
Vha464I CTTAAG 1 cut(s) 359
VneI GTGCAC 2 cut(s) 239, 486
VpaK11BI GGWCC 1 cut(s) 711
XapI RAATTY 3 cut(s) 511, 554, 956
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 938
XmnI GAANNNNTTC 1 cut(s) 754
XspI CTAG 1 cut(s) 573
ZraI GACGTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.