Rh7DG377000

RNA polymerase II subunit 5-mediating protein homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
51224512 .. 51230993
6482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG377000.1

Sequence Viewer

Length: 1047 bp
ATGAGAGGCAAAGGCACGGTGACGCCTCTCTCCTCCGTCTTCTCAGTGGAAGACACACAGAAAGCAGCGAAGCGCGTGCAGGACACGATCTCCCAGAAGGACCTCGAGCTCGACCACCTCCGTGGCTTCGCCGCCGAAAACACAGACCTCATTAACCTCGTCGCCCGACTCCCCGAACACCTCCACCACGACATTATGGTTCCGTTTGGGAAGGCAGCATTTTTCCCTGGGCGGTTGGTGCACACCAATGAGTTTATGGTTCTACTGGGAGAAGGTTACTATGCCGAAAGGACCTCGAAGCAAACAGTAGATATTTTGAACAGGAGAGGGAAGGTATTGGAGTCCCAAGTGGATTCGCTTAAGGCCATGGTTCAGGATCTCAAAGCTGAGGCTTCCTTTTTCAATGCTACCGCCACCGAAGCAGCGGAGGGCCTTGTAGAGATAGTGGAAGATTATGAGGAGGAAAGTTCTTCTGATAGAGAATGTACACCCAAGCAAGATTATGCTAATAATTCTAGAGCTGTAATTGCAAAACCTGCTGATGAAGATGAAGAATTTGCTCGTATGATGGCCAGGATGGATGAACTTGAGAAAGAAGAACGTGAAGCTGAAAGTCAAATGGCACAAAGTGATGAGGATGAGCAACTTCAGCATGGTTTGCATCAGCTTTCTGATCAGAAATCTCTCCATGGGAATCTCAAAATTTCGGAGTACCAGTCAAGGAAACCTCCAGAGCAGACAAAAGATGGAATTGCTTCTAATGAAGATAGTTTTACTGATGTGCCAAGTGGTTCGGGTCTGGTATCTAAATATGAAGTATCACATGAAAATATATTGGGCCGTGATGTAAAAAGTGTTGCTGAGAAAGATTTGGTGTCTCCGGTAGTTGGGAATGTTCAGACTGTGCCTTTATCAAGAAGTCAGGTTTCTCTTGAAAGTTCAAAACCGAAATTTGACAGGGAGAAAGCTTTTACAGGTTCTATTGTGGAGCACGCTGATAATCTACAGATAAAATCAAGGGAAAGAACTACGGCTATATCACAGTAG

Protein Analysis

348

Amino Acids

38.8

Weight (kDa)

4.95

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 29 - 141 2.7e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccII CGCG 1 cut(s) 75
AciI CCGC 4 cut(s) 132, 232, 411, 425
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 3 cut(s) 554, 702, 950
AcuI CTGAAG 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 2 cut(s) 487, 713
AfiI CCNNNNNNNGG 1 cut(s) 887
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 4 cut(s) 319, 403, 935, 942
AjnI CCWGG 2 cut(s) 226, 572
AleI CACNNNNGTG 1 cut(s) 120
AluBI AGCT 6 cut(s) 109, 386, 521, 608, 667, 968
AluI AGCT 6 cut(s) 109, 386, 521, 608, 667, 968
Alw21I GWGCWC 3 cut(s) 111, 243, 993
Alw26I GTCTC 1 cut(s) 882
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 4 cut(s) 363, 430, 570, 838
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 3 cut(s) 65, 215, 422
ApoI RAATTY 3 cut(s) 554, 702, 950
Asp700I GAANNNNTTC 1 cut(s) 754
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 4 cut(s) 100, 291, 430, 838
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 100, 291
BaeGI GKGCMC 1 cut(s) 243
BalI TGGCCA 1 cut(s) 572
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 2 cut(s) 31, 57
Bbv12I GWGCWC 3 cut(s) 111, 243, 993
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 77, 227, 434
BccI CCATC 3 cut(s) 562, 571, 740
BceAI ACGGC 1 cut(s) 825
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 2 cut(s) 228, 574
BclI TGATCA 1 cut(s) 673
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 1 cut(s) 1004
BfrI CTTAAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 544
BisI GCNGC 4 cut(s) 66, 132, 216, 423
BlsI GCNGC 4 cut(s) 67, 133, 217, 424
Bme1390I CCNGG 2 cut(s) 228, 574
Bme18I GGWCC 2 cut(s) 100, 291
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 4 cut(s) 100, 291, 430, 838
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 228, 574
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 670
BmuI ACTGGG 1 cut(s) 275
BpiI GAAGAC 2 cut(s) 31, 57
BpmI CTGGAG 1 cut(s) 714
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 5 cut(s) 121, 226, 227, 366, 688
BsaWI WCCGGW 1 cut(s) 880
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 701, 731
Bsc4I CCNNNNNNNGG 1 cut(s) 887
Bse1I ACTGG 2 cut(s) 270, 715
BseBI CCWGG 2 cut(s) 228, 574
BseDI CCNNGG 5 cut(s) 121, 226, 227, 366, 688
BseGI GGATG 3 cut(s) 582, 586, 643
BseLI CCNNNNNNNGG 1 cut(s) 887
BseMII CTCAG 3 cut(s) 57, 378, 852
BseNI ACTGG 2 cut(s) 270, 715
BseRI GAGGAG 2 cut(s) 22, 473
BseSI GKGCMC 1 cut(s) 243
BseXI GCAGC 3 cut(s) 77, 227, 434
BsgI GTGCAG 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 4 cut(s) 365, 432, 572, 840
BsiHKAI GWGCWC 3 cut(s) 111, 243, 993
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 881
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 887
BsmAI GTCTC 1 cut(s) 882
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 4 cut(s) 365, 432, 572, 840
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 111, 243, 993
Bsp1407I TGTACA 1 cut(s) 485
Bsp143I GATC 3 cut(s) 87, 376, 673
Bsp19I CCATGG 2 cut(s) 366, 688
BspACI CCGC 4 cut(s) 132, 232, 411, 425
BspANI GGCC 4 cut(s) 365, 432, 572, 840
BspCNI CTCAG 3 cut(s) 56, 379, 853
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 1 cut(s) 384
BspTI CTTAAG 1 cut(s) 359
BsrGI TGTACA 1 cut(s) 485
BsrI ACTGG 2 cut(s) 270, 715
BssECI CCNNGG 5 cut(s) 121, 226, 227, 366, 688
BssMI GATC 3 cut(s) 87, 376, 673
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 366, 688
Bst2UI CCWGG 2 cut(s) 228, 574
Bst4CI ACNGT 4 cut(s) 19, 307, 904, 1044
BstACI GRCGYC 1 cut(s) 23
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 2 cut(s) 536, 658
BstAUI TGTACA 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 77, 993
BstDEI CTNAG 3 cut(s) 43, 387, 861
BstDSI CCRYGG 3 cut(s) 121, 366, 688
BstF5I GGATG 3 cut(s) 582, 586, 643
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 3 cut(s) 90, 379, 676
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 3 cut(s) 87, 376, 673
BstMWI GCNNNNNNNGC 6 cut(s) 238, 419, 527, 536, 649, 658
BstNI CCWGG 2 cut(s) 228, 574
BstSCI CCNGG 2 cut(s) 226, 572
BstSFI CTRYAG 1 cut(s) 1004
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 3 cut(s) 77, 227, 434
BstV2I GAAGAC 2 cut(s) 31, 57
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 4 cut(s) 365, 432, 572, 840
BtgI CCRYGG 3 cut(s) 121, 366, 688
BtsCI GGATG 3 cut(s) 582, 586, 643
BtsIMutI CAGTG 1 cut(s) 51
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 77, 993
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 4 cut(s) 100, 291, 430, 838
CseI GACGC 1 cut(s) 31
Csp6I GTAC 2 cut(s) 486, 712
CviAII CATG 4 cut(s) 367, 653, 689, 824
CviQI GTAC 2 cut(s) 486, 712
DdeI CTNAG 3 cut(s) 43, 387, 861
DpnI GATC 3 cut(s) 89, 378, 675
DpnII GATC 3 cut(s) 87, 376, 673
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 366, 688
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 100, 291
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 632
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 3 cut(s) 100, 291, 430
EcoRII CCWGG 2 cut(s) 226, 572
EcoT14I CCWWGG 2 cut(s) 366, 688
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 2 cut(s) 366, 688
FaeI CATG 4 cut(s) 370, 656, 692, 827
FaqI GGGAC 1 cut(s) 328
FatI CATG 4 cut(s) 366, 652, 688, 823
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 4 cut(s) 66, 132, 216, 423
FokI GGATG 3 cut(s) 589, 593, 650
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 4 cut(s) 66, 132, 216, 423
FspBI CTAG 1 cut(s) 516
GlaI GCGC 1 cut(s) 74
GluI GCNGC 4 cut(s) 66, 132, 216, 423
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 4 cut(s) 365, 432, 572, 840
HapII CCGG 1 cut(s) 881
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 4 cut(s) 370, 656, 692, 827
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 966
HinfI GANTC 4 cut(s) 168, 341, 353, 694
HpaII CCGG 1 cut(s) 881
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 241, 488
Hpy188I TCNGA 5 cut(s) 475, 673, 678, 709, 900
Hpy188III TCNNGA 5 cut(s) 374, 516, 731, 915, 932
Hpy8I GTNNAC 2 cut(s) 241, 488
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 4 cut(s) 91, 205, 266, 325
HpyCH4III ACNGT 4 cut(s) 19, 307, 904, 1044
HpyCH4IV ACGT 1 cut(s) 601
HpyCH4V TGCA 4 cut(s) 79, 241, 530, 661
HpyF10VI GCNNNNNNNGC 6 cut(s) 238, 419, 527, 536, 649, 658
HpyF3I CTNAG 3 cut(s) 43, 387, 861
HpySE526I ACGT 1 cut(s) 601
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 4 cut(s) 370, 656, 692, 827
HspAI GCGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 3 cut(s) 87, 376, 673
LmnI GCTCC 1 cut(s) 988
Lsp1109I GCAGC 3 cut(s) 77, 227, 434
LweI GCATC 1 cut(s) 670
MaeI CTAG 1 cut(s) 516
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 2 cut(s) 19, 275
MalI GATC 3 cut(s) 89, 378, 675
MboI GATC 3 cut(s) 87, 376, 673
MboII GAAGA 8 cut(s) 31, 62, 461, 462, 557, 563, 608, 776
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 3 cut(s) 111, 243, 993
MlsI TGGCCA 1 cut(s) 572
MluCI AATT 6 cut(s) 511, 525, 554, 702, 750, 950
MluNI TGGCCA 1 cut(s) 572
MlyI GAGTC 2 cut(s) 162, 350
Mox20I TGGCCA 1 cut(s) 572
MroXI GAANNNNTTC 1 cut(s) 754
MscI TGGCCA 1 cut(s) 572
MseI TTAA 2 cut(s) 153, 360
MslI CAYNNNNRTG 2 cut(s) 120, 246
Msp20I TGGCCA 1 cut(s) 572
MspA1I CMGCKG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 1 cut(s) 881
MspR9I CCNGG 2 cut(s) 228, 574
MvaI CCWGG 2 cut(s) 228, 574
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 6 cut(s) 238, 419, 527, 536, 649, 658
NcoI CCATGG 2 cut(s) 366, 688
NdeII GATC 3 cut(s) 87, 376, 673
NlaIII CATG 4 cut(s) 370, 656, 692, 827
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 120
PaeR7I CTCGAG 1 cut(s) 104
PasI CCCWGGG 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 754
PfeI GAWTC 2 cut(s) 353, 694
PkrI GCNGC 4 cut(s) 67, 133, 217, 424
PleI GAGTC 2 cut(s) 162, 349
PpsI GAGTC 2 cut(s) 162, 349
PpuMI RGGWCCY 2 cut(s) 100, 291
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 2 cut(s) 100, 291
Psp6I CCWGG 2 cut(s) 226, 572
PspGI CCWGG 2 cut(s) 226, 572
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 4 cut(s) 100, 291, 430, 838
PspPPI RGGWCCY 2 cut(s) 100, 291
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 2 cut(s) 487, 713
RsaNI GTAC 2 cut(s) 486, 712
RseI CAYNNNNRTG 2 cut(s) 120, 246
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 153, 360
SatI GCNGC 4 cut(s) 66, 132, 216, 423
Sau3AI GATC 3 cut(s) 87, 376, 673
Sau96I GGNCC 4 cut(s) 100, 291, 430, 838
SchI GAGTC 2 cut(s) 162, 350
ScrFI CCNGG 2 cut(s) 228, 574
SduI GDGCHC 3 cut(s) 111, 243, 993
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 1004
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 2 cut(s) 100, 291
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 2 cut(s) 120, 246
SmlI CTYRAG 3 cut(s) 104, 359, 587
SmoI CTYRAG 3 cut(s) 104, 359, 587
Sse9I AATT 6 cut(s) 511, 525, 554, 702, 750, 950
SsiI CCGC 4 cut(s) 132, 232, 411, 425
SspMI CTAG 1 cut(s) 516
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 226, 572
StyI CCWWGG 2 cut(s) 366, 688
TaaI ACNGT 4 cut(s) 19, 307, 904, 1044
TaiI ACGT 1 cut(s) 604
TaqI TCGA 3 cut(s) 105, 111, 296
TasI AATT 6 cut(s) 511, 525, 554, 702, 750, 950
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 353, 694
Tru1I TTAA 2 cut(s) 153, 360
Tru9I TTAA 2 cut(s) 153, 360
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 3 cut(s) 65, 215, 422
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 6 cut(s) 558, 564, 597, 777, 828, 840
TspGWI ACGGA 3 cut(s) 25, 110, 192
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 359
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 100, 291
XapI RAATTY 3 cut(s) 554, 702, 950
XbaI TCTAGA 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 754
XspI CTAG 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.