RchiOBHm_Chr4g0410421

RNA polymerase II subunit 5-mediating protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002516
Physical Location & Seq
Forward (+)
34157049 .. 34163192
6144 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38134

Sequence Viewer

Length: 1107 bp
ATGAAAGGCAAGGGGACGGTGACGCCTCTCTCCTCCATCTTCTCAGTGGAAGACACACAGAAAGCAGCGAAGCGCGTGCAGGACACGATCGCCCAAAAGGACCTCGAGCTCGACCACCTCCGTGGCTTCGCCGCCGACAACACAGACCTCATTAACCTCGTGTCCCGACTCCCCGAACACCTCCACCACGACATTATGGTTCCATTTGGGAAGGCAGCATTTTTCCCAGGGCGTTTGGTGCACACCAATGAGTTTATGGTTCTACTGGGAGAAAGTTACTACGCCGAAAGGACCTCGAAGCAAACAGTAGATATTTTGAACAGGAGAGGGAAGGTGTTGGAGTCCCAAGTCGATTCACTTAAGGCCATGGTTCAGGATCTCAAAGCTGAGGCTTCCTTTTTCAATGCTACTTGCGCCGAAGCGGTGGAGGGCCTTGTAGAGATAATGGAAGATTATGAGGAGGAAAGTTCTTCTGATAGAGAATGTGCATTCAAGCAAGATTCTCCTAATAATTCTGGAGCTGTAATTGCAAAACCTGCTGATGAAGATGAAGAATTTGCTCGTATGATGGCCAGGATGGATGAACTTGAGAAAGAAGAACGTGAAGCTGAAAGTCAGATGACACAAAGTGATGAGGATGAGCAAGTTCAGCATGGTTTGCATCAGCTTTCTGATCAGAAATCTCTCCATGGGAATCTCAAAATTTCGGAGTACCAGTCAAGGAAACCTCCAGAGCAGACAAAAGATGGAGTTGCTTGTAATGAAGATAGTTTTACTGATGTGCCAAGTTGTTCGGGTCTGGAATCTATATCTGACGATAAAGTATCACATGAAAATATATTGGGCTGTGATGTAAAAAGTGTTGCTGAGAAAGATTTGGCGTCTCCAGTAGTTGAGAATGTTCAGACTGTGCCTTTATCAAGAAGTCAGGTTTCTCTTGAAAGTTCAAAACCAAAATTTGACCGGGAGAAAGCTTTTACAGGTTCTATTGTTGAGCACACTGATAATCTTCAGATAAAATCAAGGGAAAGAACTACGGCTACATCACAGTCCTCTGCTTATCAAGTTTCAAAGCCGGTTTCAAGATTCAAGATGCAGAGAAAGTAG

Protein Analysis

368

Amino Acids

41.08

Weight (kDa)

4.97

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 29 - 142 4.3e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccII CGCG 1 cut(s) 75
AciI CCGC 2 cut(s) 132, 422
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 3 cut(s) 554, 702, 956
AcuI CTGAAG 1 cut(s) 995
AcyI GRCGYC 2 cut(s) 23, 881
AdeI CACNNNGTG 1 cut(s) 629
AfaI GTAC 1 cut(s) 713
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 8 cut(s) 319, 403, 493, 941, 948, 1071, 1083, 1090
AjnI CCWGG 2 cut(s) 226, 572
AleI CACNNNNGTG 1 cut(s) 120
AluBI AGCT 6 cut(s) 109, 386, 521, 608, 667, 974
AluI AGCT 6 cut(s) 109, 386, 521, 608, 667, 974
Alw21I GWGCWC 3 cut(s) 111, 243, 999
Alw26I GTCTC 1 cut(s) 888
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 1 cut(s) 384
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 3 cut(s) 363, 430, 570
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 65, 215
ApoI RAATTY 3 cut(s) 554, 702, 956
AspLEI GCGC 2 cut(s) 75, 416
AspS9I GGNCC 3 cut(s) 100, 291, 430
AsuC2I CCSGG 1 cut(s) 965
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 2 cut(s) 100, 291
BaeGI GKGCMC 1 cut(s) 243
BalI TGGCCA 1 cut(s) 572
BanII GRGCYC 1 cut(s) 111
BauI CACGAG 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 3 cut(s) 111, 243, 999
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 77, 227
BccI CCATC 4 cut(s) 44, 562, 571, 740
BceAI ACGGC 1 cut(s) 1053
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 2 cut(s) 228, 574
BclI TGATCA 1 cut(s) 673
BcnI CCSGG 1 cut(s) 965
BcoDI GTCTC 1 cut(s) 888
BfrI CTTAAG 1 cut(s) 359
BfuAI ACCTGC 1 cut(s) 544
BisI GCNGC 3 cut(s) 66, 132, 216
BlsI GCNGC 3 cut(s) 67, 133, 217
Bme1390I CCNGG 3 cut(s) 228, 574, 965
Bme18I GGWCC 2 cut(s) 100, 291
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 3 cut(s) 100, 291, 430
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 3 cut(s) 228, 574, 965
BmrI ACTGGG 1 cut(s) 275
BmsI GCATC 2 cut(s) 670, 1083
BmuI ACTGGG 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 3 cut(s) 537, 714, 870
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 965
BsaHI GRCGYC 2 cut(s) 23, 881
BsaJI CCNNGG 5 cut(s) 121, 226, 227, 366, 688
BsaXI ACNNNNNCTCC 2 cut(s) 701, 731
Bse118I RCCGGY 1 cut(s) 1075
Bse1I ACTGG 3 cut(s) 270, 715, 887
BseBI CCWGG 2 cut(s) 228, 574
BseDI CCNNGG 5 cut(s) 121, 226, 227, 366, 688
BseGI GGATG 3 cut(s) 582, 586, 643
BseMII CTCAG 3 cut(s) 57, 378, 858
BseNI ACTGG 3 cut(s) 270, 715, 887
BseRI GAGGAG 2 cut(s) 22, 473
BseSI GKGCMC 1 cut(s) 243
BseXI GCAGC 2 cut(s) 77, 227
BsgI GTGCAG 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 365, 432, 572
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 3 cut(s) 111, 243, 999
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 2 cut(s) 964, 1076
BslFI GGGAC 3 cut(s) 28, 148, 328
BsmAI GTCTC 1 cut(s) 888
BsmBI CGTCTC 1 cut(s) 888
BsmFI GGGAC 3 cut(s) 28, 148, 328
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 3 cut(s) 365, 432, 572
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 111, 243, 999
Bsp143I GATC 3 cut(s) 87, 376, 673
Bsp19I CCATGG 2 cut(s) 366, 688
BspACI CCGC 2 cut(s) 132, 422
BspANI GGCC 3 cut(s) 365, 432, 572
BspCNI CTCAG 3 cut(s) 56, 379, 859
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 1 cut(s) 384
BspTI CTTAAG 1 cut(s) 359
BsrFI RCCGGY 1 cut(s) 1075
BsrI ACTGG 3 cut(s) 270, 715, 887
BssAI RCCGGY 1 cut(s) 1075
BssECI CCNNGG 5 cut(s) 121, 226, 227, 366, 688
BssMI GATC 3 cut(s) 87, 376, 673
BssNI GRCGYC 2 cut(s) 23, 881
BssSI CACGAG 1 cut(s) 158
BssT1I CCWWGG 2 cut(s) 366, 688
Bst2BI CACGAG 1 cut(s) 158
Bst2UI CCWGG 2 cut(s) 228, 574
Bst4CI ACNGT 4 cut(s) 19, 307, 910, 1050
BstACI GRCGYC 2 cut(s) 23, 881
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 2 cut(s) 536, 658
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 3 cut(s) 43, 387, 867
BstDSI CCRYGG 3 cut(s) 121, 366, 688
BstF5I GGATG 3 cut(s) 582, 586, 643
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 2 cut(s) 75, 416
BstKTI GATC 3 cut(s) 90, 379, 676
BstMAI GTCTC 1 cut(s) 888
BstMBI GATC 3 cut(s) 87, 376, 673
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 6 cut(s) 238, 413, 527, 536, 649, 658
BstNI CCWGG 2 cut(s) 228, 574
BstSCI CCNGG 3 cut(s) 226, 572, 963
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 77, 227
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 376
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 3 cut(s) 365, 432, 572
BtgI CCRYGG 3 cut(s) 121, 366, 688
BtsCI GGATG 3 cut(s) 582, 586, 643
BtsIMutI CAGTG 2 cut(s) 51, 999
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 77
CfoI GCGC 2 cut(s) 75, 416
Cfr10I RCCGGY 1 cut(s) 1075
Cfr13I GGNCC 3 cut(s) 100, 291, 430
CseI GACGC 2 cut(s) 31, 870
Csp6I GTAC 1 cut(s) 712
CviAII CATG 4 cut(s) 367, 653, 689, 830
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 3 cut(s) 43, 387, 867
DpnI GATC 3 cut(s) 89, 378, 675
DpnII GATC 3 cut(s) 87, 376, 673
DraIII CACNNNGTG 1 cut(s) 629
EaeI YGGCCR 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 366, 688
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 100, 291
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 995
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 3 cut(s) 100, 291, 430
EcoRII CCWGG 2 cut(s) 226, 572
EcoT14I CCWWGG 2 cut(s) 366, 688
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 2 cut(s) 366, 688
Esp3I CGTCTC 1 cut(s) 888
FaeI CATG 4 cut(s) 370, 656, 692, 833
FaqI GGGAC 3 cut(s) 28, 148, 328
FatI CATG 4 cut(s) 366, 652, 688, 829
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 3 cut(s) 66, 132, 216
FokI GGATG 3 cut(s) 589, 593, 650
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 3 cut(s) 66, 132, 216
GlaI GCGC 2 cut(s) 74, 415
GluI GCNGC 3 cut(s) 66, 132, 216
GsuI CTGGAG 3 cut(s) 537, 714, 870
HaeIII GGCC 3 cut(s) 365, 432, 572
HapII CCGG 2 cut(s) 964, 1076
HgaI GACGC 2 cut(s) 31, 870
HhaI GCGC 2 cut(s) 75, 416
Hin1I GRCGYC 2 cut(s) 23, 881
Hin1II CATG 4 cut(s) 370, 656, 692, 833
Hin6I GCGC 2 cut(s) 73, 414
HinP1I GCGC 2 cut(s) 73, 414
HindIII AAGCTT 1 cut(s) 972
HinfI GANTC 7 cut(s) 168, 341, 353, 500, 694, 803, 1086
HpaII CCGG 2 cut(s) 964, 1076
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 8 cut(s) 475, 618, 673, 678, 709, 814, 906, 1014
Hpy188III TCNNGA 9 cut(s) 165, 374, 516, 731, 800, 921, 938, 1083, 1090
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 205, 325
HpyCH4III ACNGT 4 cut(s) 19, 307, 910, 1050
HpyCH4IV ACGT 1 cut(s) 601
HpyCH4V TGCA 6 cut(s) 79, 241, 488, 530, 661, 1096
HpyF10VI GCNNNNNNNGC 6 cut(s) 238, 413, 527, 536, 649, 658
HpyF3I CTNAG 3 cut(s) 43, 387, 867
HpySE526I ACGT 1 cut(s) 601
Hsp92I GRCGYC 2 cut(s) 23, 881
Hsp92II CATG 4 cut(s) 370, 656, 692, 833
HspAI GCGC 2 cut(s) 73, 414
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 3 cut(s) 87, 376, 673
LmnI GCTCC 1 cut(s) 518
Lsp1109I GCAGC 2 cut(s) 77, 227
LweI GCATC 2 cut(s) 670, 1083
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 2 cut(s) 19, 275
MalI GATC 3 cut(s) 89, 378, 675
MboI GATC 3 cut(s) 87, 376, 673
MboII GAAGA 9 cut(s) 31, 62, 461, 462, 557, 563, 608, 776, 1001
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 3 cut(s) 111, 243, 999
MlsI TGGCCA 1 cut(s) 572
MluCI AATT 5 cut(s) 511, 525, 554, 702, 956
MluNI TGGCCA 1 cut(s) 572
MlyI GAGTC 2 cut(s) 162, 350
MmeI TCCRAC 1 cut(s) 318
Mox20I TGGCCA 1 cut(s) 572
MscI TGGCCA 1 cut(s) 572
MseI TTAA 2 cut(s) 153, 360
MslI CAYNNNNRTG 2 cut(s) 120, 246
Msp20I TGGCCA 1 cut(s) 572
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 2 cut(s) 964, 1076
MspR9I CCNGG 3 cut(s) 228, 574, 965
Mva1269I GAATGC 1 cut(s) 488
MvaI CCWGG 2 cut(s) 228, 574
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 6 cut(s) 238, 413, 527, 536, 649, 658
NciI CCSGG 1 cut(s) 965
NcoI CCATGG 2 cut(s) 366, 688
NdeII GATC 3 cut(s) 87, 376, 673
NlaIII CATG 4 cut(s) 370, 656, 692, 833
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 120
PaeR7I CTCGAG 1 cut(s) 104
PasI CCCWGGG 1 cut(s) 227
PctI GAATGC 1 cut(s) 488
PfeI GAWTC 5 cut(s) 353, 500, 694, 803, 1086
PkrI GCNGC 3 cut(s) 67, 133, 217
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 2 cut(s) 162, 349
PpsI GAGTC 2 cut(s) 162, 349
PpuMI RGGWCCY 2 cut(s) 100, 291
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 2 cut(s) 100, 291
Psp6I CCWGG 2 cut(s) 226, 572
PspGI CCWGG 2 cut(s) 226, 572
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 3 cut(s) 100, 291, 430
PspPPI RGGWCCY 2 cut(s) 100, 291
PspXI VCTCGAGB 1 cut(s) 104
PsrI GAACNNNNNNTAC 2 cut(s) 1024, 1056
PsuI RGATCY 1 cut(s) 376
PvuI CGATCG 1 cut(s) 90
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
RseI CAYNNNNRTG 2 cut(s) 120, 246
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 153, 360
SatI GCNGC 3 cut(s) 66, 132, 216
Sau3AI GATC 3 cut(s) 87, 376, 673
Sau96I GGNCC 3 cut(s) 100, 291, 430
SchI GAGTC 2 cut(s) 162, 350
ScrFI CCNGG 3 cut(s) 228, 574, 965
SduI GDGCHC 3 cut(s) 111, 243, 999
SfaNI GCATC 2 cut(s) 670, 1083
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 2 cut(s) 100, 291
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 2 cut(s) 120, 246
SmlI CTYRAG 3 cut(s) 104, 359, 587
SmoI CTYRAG 3 cut(s) 104, 359, 587
Sse9I AATT 5 cut(s) 511, 525, 554, 702, 956
SsiI CCGC 2 cut(s) 132, 422
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 226, 572, 963
StyI CCWWGG 2 cut(s) 366, 688
TaaI ACNGT 4 cut(s) 19, 307, 910, 1050
TaiI ACGT 1 cut(s) 604
TaqI TCGA 4 cut(s) 105, 111, 296, 351
TasI AATT 5 cut(s) 511, 525, 554, 702, 956
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 5 cut(s) 353, 500, 694, 803, 1086
Tru1I TTAA 2 cut(s) 153, 360
Tru9I TTAA 2 cut(s) 153, 360
TscAI CASTG 2 cut(s) 51, 1006
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 2 cut(s) 65, 215
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 6 cut(s) 17, 558, 564, 597, 777, 846
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 2 cut(s) 51, 1006
Vha464I CTTAAG 1 cut(s) 359
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 100, 291
XapI RAATTY 3 cut(s) 554, 702, 956
XcmI CCANNNNNNNNNTGG 2 cut(s) 43, 253
XhoI CTCGAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.