Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002516

Physical Location & Seq

Genomic Coordinates Forward (+)

40864724 .. 40870676

Gene Structure 5953 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG160600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAAGGCAAGGGGACGGTGACGCCTCTCTCCTCCATCTTCTCAGTGGAAGACACACAGAAAGCAGCGAAGCGCGTGCAGGACACGATCGCCCAAAAGGACCTCGAGCTCGACCACCTCCGTGGCTTCGCCGCCGACAACACAGACCTCATTAACCTCGTGTCCCGACTCCCCGAACACCTCCACCACGACATTATGGTTCCATTTGGGAAGGCAGCATTTTTCCCAGGGCGTTTGGTGCACACGAATGAGTTTATGGTTCTACTGGGAGAAAGTTACTACGCCGAAAGGACCTCGAAGCAAACAGTAGATATTTTGAACAGGAGAGGGAAGGTGTTGGAGTCCCAAGTCGATTCACTTAAGGCCATGGTTCAGGATCTCAAAGCTGAGGCTTCCTTTTTCAATGCTACTTGCTCCGAAGCGGTGGAGGGCCTTGTAGAGATAATGGAAGATTATGAGGAGGAAAGTTCTTCTGATAGAGAATGTGCATTCAAGCAAGATTCTCCTAATAATTCTGGAGCTGTAATTGCAAAACCTGCTGATGAAGATGAAGAATTTGCTCGTATGATGGCCAGGATGGATGAACTTGAGAAAGAAGAACGTGAAGCTGAAAGTCAGATGACACAAAGTGATGAGGATGAGCAAGTTCAGCATGGTTTGCATCAGCTTTCTGATCAGAAATCTCTCCATGGGAATCTCAAAATTTCGGAGTACCAGTCAAGGAAACCTCCAGAGCAGACAAAAGATGGAGTTGCTTGTAATGAAGATAGTTTTACTGATGTGCCAAGTTGTTCGGGTCTGGAATCTATATCTGACGATAAAGTATCACATGAAAATATATTGGGCTGTGATGTAAAAAGTGTTGCTGAGAAAGATTTGGCGTCTCCAGTAGTTGAGAATGTTCAGACTGTGCCTTTATCAAGAAGTCAGGTTTCTCTTGAAAGTTCAAAACCAAAATTTGACCGGGAGAAAGTATGTAATTCAAAGCCTTTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006355 GO:0006357 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016591 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0030234 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035303 GO:0035305 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0080090 GO:0098772 GO:0140110 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

332

Amino Acids

37.02

Weight (kDa)

4.79

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	29 - 142	4.5e-20	Prefoldin subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03760
fragaria_vesca	FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750
malus_domestica	MD09G1244900.v1.1
prunus_persica	Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1
pyrus_communis	pycom09g16290
rosa_chinensis	RchiOBHm_Chr4g0410421 RchiOBHm_Chr7g0225641
rosa_laevigata	RLG00000001798 RLG00000033455
rosa_multiflora	Rmu_sc0003876.1_g000009
rosa_roxburghii	Rroxscaffold_1G00046790 Rroxscaffold_3G00233610 Rroxscaffold_3G00255650 Rroxscaffold_4G00302570
rosa_rugosa	Rorug05G0137300 Rorug07G0232100 Rorug07G0232100
rosa_samantha	Rh4AG006500 Rh4AG160600 Rh4CG172700 Rh7AG371600 Rh7BG366100 Rh7CG390300 Rh7DG377000
rosa_wichuraiana	Rw7G031800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	544
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	132, 422
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	3 cut(s)	554, 702, 956
AcyI	GRCGYC	2 cut(s)	23, 881
AdeI	CACNNNGTG	1 cut(s)	629
AfaI	GTAC	1 cut(s)	713
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	6 cut(s)	319, 403, 493, 941, 948, 984
AjnI	CCWGG	2 cut(s)	226, 572
AleI	CACNNNNGTG	1 cut(s)	120
AluBI	AGCT	5 cut(s)	109, 386, 521, 608, 667
AluI	AGCT	5 cut(s)	109, 386, 521, 608, 667
Alw21I	GWGCWC	2 cut(s)	111, 243
Alw26I	GTCTC	1 cut(s)	888
Alw44I	GTGCAC	1 cut(s)	239
AlwI	GGATC	1 cut(s)	384
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	3 cut(s)	363, 430, 570
ApaLI	GTGCAC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	65, 215
ApoI	RAATTY	3 cut(s)	554, 702, 956
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	3 cut(s)	100, 291, 430
AsuC2I	CCSGG	1 cut(s)	965
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	100, 291
BaeGI	GKGCMC	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	111, 243
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	77, 227
BccI	CCATC	4 cut(s)	44, 562, 571, 740
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	2 cut(s)	228, 574
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	965
BcoDI	GTCTC	1 cut(s)	888
BfrI	CTTAAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	544
BisI	GCNGC	3 cut(s)	66, 132, 216
BlsI	GCNGC	3 cut(s)	67, 133, 217
Bme1390I	CCNGG	3 cut(s)	228, 574, 965
Bme18I	GGWCC	2 cut(s)	100, 291
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	3 cut(s)	100, 291, 430
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	3 cut(s)	228, 574, 965
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	3 cut(s)	537, 714, 870
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	965
BsaHI	GRCGYC	2 cut(s)	23, 881
BsaJI	CCNNGG	5 cut(s)	121, 226, 227, 366, 688
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bse1I	ACTGG	3 cut(s)	270, 715, 887
BseBI	CCWGG	2 cut(s)	228, 574
BseDI	CCNNGG	5 cut(s)	121, 226, 227, 366, 688
BseGI	GGATG	3 cut(s)	582, 586, 643
BseMII	CTCAG	3 cut(s)	57, 378, 858
BseNI	ACTGG	3 cut(s)	270, 715, 887
BseRI	GAGGAG	2 cut(s)	22, 473
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	77, 227
BsgI	GTGCAG	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	365, 432, 572
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	111, 243
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	964
BslFI	GGGAC	3 cut(s)	28, 148, 328
BsmAI	GTCTC	1 cut(s)	888
BsmBI	CGTCTC	1 cut(s)	888
BsmFI	GGGAC	3 cut(s)	28, 148, 328
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	3 cut(s)	365, 432, 572
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	111, 243
Bsp143I	GATC	3 cut(s)	87, 376, 673
Bsp19I	CCATGG	2 cut(s)	366, 688
BspACI	CCGC	2 cut(s)	132, 422
BspANI	GGCC	3 cut(s)	365, 432, 572
BspCNI	CTCAG	3 cut(s)	56, 379, 859
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	544
BspPI	GGATC	1 cut(s)	384
BspTI	CTTAAG	1 cut(s)	359
BsrI	ACTGG	3 cut(s)	270, 715, 887
BssECI	CCNNGG	5 cut(s)	121, 226, 227, 366, 688
BssMI	GATC	3 cut(s)	87, 376, 673
BssNI	GRCGYC	2 cut(s)	23, 881
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	366, 688
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	228, 574
Bst4CI	ACNGT	3 cut(s)	19, 307, 910
BstACI	GRCGYC	2 cut(s)	23, 881
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	2 cut(s)	536, 658
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	43, 387, 867
BstDSI	CCRYGG	3 cut(s)	121, 366, 688
BstF5I	GGATG	3 cut(s)	582, 586, 643
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	3 cut(s)	90, 379, 676
BstMAI	GTCTC	1 cut(s)	888
BstMBI	GATC	3 cut(s)	87, 376, 673
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	5 cut(s)	238, 527, 536, 649, 658
BstNI	CCWGG	2 cut(s)	228, 574
BstSCI	CCNGG	3 cut(s)	226, 572, 963
BstSLI	GKGCMC	1 cut(s)	243
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	77, 227
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	376
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	365, 432, 572
BtgI	CCRYGG	3 cut(s)	121, 366, 688
BtsCI	GGATG	3 cut(s)	582, 586, 643
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	3 cut(s)	100, 291, 430
CseI	GACGC	2 cut(s)	31, 870
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	4 cut(s)	367, 653, 689, 830
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	3 cut(s)	43, 387, 867
DpnI	GATC	3 cut(s)	89, 378, 675
DpnII	GATC	3 cut(s)	87, 376, 673
DraI	TTTAAA	1 cut(s)	994
DraIII	CACNNNGTG	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	366, 688
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	100, 291
Eco53kI	GAGCTC	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	3 cut(s)	100, 291, 430
EcoRII	CCWGG	2 cut(s)	226, 572
EcoT14I	CCWWGG	2 cut(s)	366, 688
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	2 cut(s)	366, 688
Esp3I	CGTCTC	1 cut(s)	888
FaeI	CATG	4 cut(s)	370, 656, 692, 833
FaqI	GGGAC	3 cut(s)	28, 148, 328
FatI	CATG	4 cut(s)	366, 652, 688, 829
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	3 cut(s)	66, 132, 216
FokI	GGATG	3 cut(s)	589, 593, 650
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	3 cut(s)	66, 132, 216
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	66, 132, 216
GsuI	CTGGAG	3 cut(s)	537, 714, 870
HaeIII	GGCC	3 cut(s)	365, 432, 572
HapII	CCGG	1 cut(s)	964
HgaI	GACGC	2 cut(s)	31, 870
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	2 cut(s)	23, 881
Hin1II	CATG	4 cut(s)	370, 656, 692, 833
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	6 cut(s)	168, 341, 353, 500, 694, 803
HpaII	CCGG	1 cut(s)	964
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	8 cut(s)	418, 475, 618, 673, 678, 709, 814, 906
Hpy188III	TCNNGA	7 cut(s)	165, 374, 516, 731, 800, 921, 938
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	205, 325
HpyCH4III	ACNGT	3 cut(s)	19, 307, 910
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	5 cut(s)	79, 241, 488, 530, 661
HpyF10VI	GCNNNNNNNGC	5 cut(s)	238, 527, 536, 649, 658
HpyF3I	CTNAG	3 cut(s)	43, 387, 867
HpySE526I	ACGT	1 cut(s)	601
Hsp92I	GRCGYC	2 cut(s)	23, 881
Hsp92II	CATG	4 cut(s)	370, 656, 692, 833
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	3 cut(s)	87, 376, 673
LmnI	GCTCC	2 cut(s)	419, 518
Lsp1109I	GCAGC	2 cut(s)	77, 227
LweI	GCATC	1 cut(s)	670
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	2 cut(s)	19, 275
MalI	GATC	3 cut(s)	89, 378, 675
MboI	GATC	3 cut(s)	87, 376, 673
MboII	GAAGA	8 cut(s)	31, 62, 461, 462, 557, 563, 608, 776
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	2 cut(s)	111, 243
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	6 cut(s)	511, 525, 554, 702, 956, 979
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	2 cut(s)	162, 350
MmeI	TCCRAC	1 cut(s)	318
Mox20I	TGGCCA	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	3 cut(s)	153, 360, 993
MslI	CAYNNNNRTG	2 cut(s)	120, 246
Msp20I	TGGCCA	1 cut(s)	572
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	1 cut(s)	964
MspR9I	CCNGG	3 cut(s)	228, 574, 965
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	228, 574
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	5 cut(s)	238, 527, 536, 649, 658
NciI	CCSGG	1 cut(s)	965
NcoI	CCATGG	2 cut(s)	366, 688
NdeII	GATC	3 cut(s)	87, 376, 673
NlaIII	CATG	4 cut(s)	370, 656, 692, 833
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	104
PasI	CCCWGGG	1 cut(s)	227
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	353, 500, 694, 803
PkrI	GCNGC	3 cut(s)	67, 133, 217
Ple19I	CGATCG	1 cut(s)	90
PleI	GAGTC	2 cut(s)	162, 349
PpsI	GAGTC	2 cut(s)	162, 349
PpuMI	RGGWCCY	2 cut(s)	100, 291
Psp124BI	GAGCTC	1 cut(s)	111
Psp5II	RGGWCCY	2 cut(s)	100, 291
Psp6I	CCWGG	2 cut(s)	226, 572
PspGI	CCWGG	2 cut(s)	226, 572
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	3 cut(s)	100, 291, 430
PspPPI	RGGWCCY	2 cut(s)	100, 291
PspXI	VCTCGAGB	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	376
PvuI	CGATCG	1 cut(s)	90
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	2 cut(s)	120, 246
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	153, 360, 993
SatI	GCNGC	3 cut(s)	66, 132, 216
Sau3AI	GATC	3 cut(s)	87, 376, 673
Sau96I	GGNCC	3 cut(s)	100, 291, 430
SchI	GAGTC	2 cut(s)	162, 350
ScrFI	CCNGG	3 cut(s)	228, 574, 965
SduI	GDGCHC	2 cut(s)	111, 243
SfaNI	GCATC	1 cut(s)	670
Sfr274I	CTCGAG	1 cut(s)	104
SinI	GGWCC	2 cut(s)	100, 291
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	2 cut(s)	120, 246
SmlI	CTYRAG	3 cut(s)	104, 359, 587
SmoI	CTYRAG	3 cut(s)	104, 359, 587
Sse9I	AATT	6 cut(s)	511, 525, 554, 702, 956, 979
SsiI	CCGC	2 cut(s)	132, 422
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	226, 572, 963
StyI	CCWWGG	2 cut(s)	366, 688
TaaI	ACNGT	3 cut(s)	19, 307, 910
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	4 cut(s)	105, 111, 296, 351
TasI	AATT	6 cut(s)	511, 525, 554, 702, 956, 979
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	4 cut(s)	353, 500, 694, 803
Tru1I	TTAA	3 cut(s)	153, 360, 993
Tru9I	TTAA	3 cut(s)	153, 360, 993
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	65, 215
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	6 cut(s)	17, 558, 564, 597, 777, 846
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	359
VneI	GTGCAC	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	100, 291
XapI	RAATTY	3 cut(s)	554, 702, 956
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XhoI	CTCGAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.