Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002516

Physical Location & Seq

Genomic Coordinates Reverse (-)

1214825 .. 1215318

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG006500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTGCTCCAATTCAAATTAAAAGTGGGATCAATTGTTTCAGTTGCACCCAAGCAAGATTATCCTAATAATTCTAGAGCTGTAATTGCAAAACCTGCTGATGAAGATGAAGAATTTGCTCGTATGATGGCCAGGATGGATGAACTTGAGAAAGAAGAACGTGAAGCTGAAAGTCAGATGGCACAAAGTGATGAGGATGAGCAACTTCAGCATGGTTTGCATCAGCTTTCTGATCAGAAATCTCTCCATGGGAATCTCAAAATTTCGGAGTACCAGTCAAGGAAACCTCCAGATTCTTACATATCTTTTGAATTCATGGTTTTTGGCTTCAAAGTTCATCATCCATGCAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006355 GO:0006357 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016591 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0030234 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035303 GO:0035305 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0080090 GO:0098772 GO:0140110 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

118

Amino Acids

13.66

Weight (kDa)

5.23

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03760
fragaria_vesca	FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750
malus_domestica	MD09G1244900.v1.1
prunus_persica	Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1
pyrus_communis	pycom09g16290
rosa_chinensis	RchiOBHm_Chr4g0410421 RchiOBHm_Chr7g0225641
rosa_laevigata	RLG00000001798 RLG00000033455
rosa_multiflora	Rmu_sc0003876.1_g000009
rosa_roxburghii	Rroxscaffold_1G00046790 Rroxscaffold_3G00233610 Rroxscaffold_3G00255650 Rroxscaffold_4G00302570
rosa_rugosa	Rorug05G0137300 Rorug07G0232100 Rorug07G0232100
rosa_samantha	Rh4AG006500 Rh4AG160600 Rh4CG172700 Rh7AG371600 Rh7BG366100 Rh7CG390300 Rh7DG377000
rosa_wichuraiana	Rw7G031800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	3 cut(s)	113, 261, 311
AcuI	CTGAAG	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	16, 311, 331
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	3 cut(s)	80, 167, 226
AluI	AGCT	3 cut(s)	80, 167, 226
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	129
ApoI	RAATTY	3 cut(s)	113, 261, 311
BalI	TGGCCA	1 cut(s)	131
BccI	CCATC	3 cut(s)	121, 130, 172
BciT130I	CCWGG	1 cut(s)	133
BclI	TGATCA	1 cut(s)	232
BfaI	CTAG	1 cut(s)	75
BfuAI	ACCTGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	4 cut(s)	141, 145, 202, 340
BseNI	ACTGG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	29, 232
Bsp19I	CCATGG	1 cut(s)	247
BspANI	GGCC	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	29, 232
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	133
BstAPI	GCANNNNNTGC	2 cut(s)	95, 217
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	4 cut(s)	141, 145, 202, 340
BstKTI	GATC	2 cut(s)	32, 235
BstMBI	GATC	2 cut(s)	29, 232
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 208, 217
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	4 cut(s)	141, 145, 202, 340
BveI	ACCTGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	4 cut(s)	212, 248, 316, 345
CviJI	RGCY	5 cut(s)	80, 131, 167, 226, 327
CviKI_1	RGCY	5 cut(s)	80, 131, 167, 226, 327
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	2 cut(s)	31, 234
DpnII	GATC	2 cut(s)	29, 232
DraIII	CACNNNGTG	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	4 cut(s)	215, 251, 319, 348
FaiI	YATR	6 cut(s)	125, 213, 249, 302, 317, 346
FatI	CATG	4 cut(s)	211, 247, 315, 344
FbaI	TGATCA	1 cut(s)	232
FokI	GGATG	4 cut(s)	148, 152, 209, 327
FspBI	CTAG	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	215, 251, 319, 348
HinfI	GANTC	2 cut(s)	253, 293
Hpy188I	TCNGA	4 cut(s)	177, 232, 237, 268
Hpy188III	TCNNGA	2 cut(s)	75, 290
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	47, 89, 220, 348
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 208, 217
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	215, 251, 319, 348
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	29, 232
LmnI	GCTCC	1 cut(s)	12
LpnPI	CCDG	5 cut(s)	108, 118, 145, 287, 303
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	160
MalI	GATC	2 cut(s)	31, 234
MboI	GATC	2 cut(s)	29, 232
MboII	GAAGA	3 cut(s)	116, 122, 167
MfeI	CAATTG	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	8 cut(s)	11, 17, 33, 70, 84, 113, 261, 311
MluNI	TGGCCA	1 cut(s)	131
MnlI	CCTC	2 cut(s)	187, 297
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	133
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 208, 217
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	2 cut(s)	29, 232
NlaIII	CATG	4 cut(s)	215, 251, 319, 348
PfeI	GAWTC	2 cut(s)	253, 293
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	29, 232
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	6 cut(s)	82, 97, 163, 169, 228, 289
SfaNI	GCATC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	8 cut(s)	11, 17, 33, 70, 84, 113, 261, 311
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	247
TaiI	ACGT	1 cut(s)	163
TasI	AATT	8 cut(s)	11, 17, 33, 70, 84, 113, 261, 311
TfiI	GAWTC	2 cut(s)	253, 293
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TspDTI	ATGAA	5 cut(s)	117, 123, 156, 304, 326
XapI	RAATTY	3 cut(s)	113, 261, 311
XbaI	TCTAGA	1 cut(s)	74
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.