Prupe.4G278300_v2.0.a1

RNA polymerase II subunit 5-mediating protein homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
23372788 .. 23378416
5629 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G278300.1

Sequence Viewer

Length: 1287 bp
ATGCATCTTGTACTTTTCTTCCCATTCTTGTTCGGTCTATTTCCTGATGATGTGCAGGTACAGTGCGTTTTGACTGACTTTCTCACCTCTGAAAAAATGGAAGAGGCAGCCAAAGGTAAGGGAACAGTGACGTCACTCTCCTCCTTGTTCCCTGTCGAAGACGCACAGAAAGCAGCGAAGCGCCTACAGGACTCGATCGCCGAGAGGCAACCGATGCTGGACCAGCTCGGAGGCTTCGTCGCCGACAACGCCAGCCTCATCAACCTCGTCCGCCGCCTCCCCGACCACCTCCACCACGATATTATGGTTCCGTTTGGGAAGGCAGCGTTCTTCCCTGGGCGTTTGGTGCACACCAATGAATTTCTGGTTCTGCTGGGAGAAGGTTACTATGCAGAAAGGACATCGAGGCAAACATTGGAGATTTTGAAGAGAAGAGGAATGGCATTGGACTCCCAAGTGGATTCTCTCAATGCCATGCTTGATGATCTTAAACTTGAGGCTTCCTTTCTTGATGCTACGGCCTCTGAAGCCGCGGAGGGCCTTGTAGAGATTAGGGAAGATTATGCGGAGGAAACTTCTTCTGAAAAAGAATCTGAGCCAGGTCCACGTAAGCAAGCTTCTTCTAGTTCTTCTGGAACGGACTTTACAAAAGTTGCAGATGAAGATGAAGAATTTGCTCGTATAGCGTCCAGGATGGATGAACTGGAGAAAGAAGAACTTGAAGCTGAAAATGAGGCAGTAAGCCTAGAGCAAACTAAAGATGAATTTGCAGCAGAAAGTTATGATGAGAGCGATGAAGATGAGCAAGTTGAAGCTGATTTGCACCAGTATTCAGATCATAAATCTCTTCATCAGAATGTCAAATTTTCTGAGAAAGCAATGTCAAGAAAACCTCCAGAACTAACAGAGGATGGAATTGCTGCCAACAAAGAAAGTTTTACTGATCAGCTAAGCTGTTTAGGCCTGACAGTGCAACCTATAGCCAAAGTACAAGATAGAAGTTCGCATGGAAATATATTAGCGAGTGATGTTAAAAGTTCTTCTGGGAAAGCTTTGGTGGCTCCTCAAGTTCACAATGCTCAAGCTGTGGACTTACCAAGAAGTCAGGAGGTCCCTCTTCAAAGTTCAAAACCAGAATTTGATGGTCAGAAAGCTTTTACAGGTTCCATTATTGAACGCACTCACAATCTACGGACAACTTCAAGGGAACAAACTACAACTACATCACAGTCTTCTGGTTCTCAACCGCCAAAACCAGTTTCAAGATTCAAGATGCAGAGAAAATAG

Protein Analysis

429

Amino Acids

47.43

Weight (kDa)

4.82

Isoelectric Point (pI)

58.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 46
AccII CGCG 1 cut(s) 533
AciI CCGC 6 cut(s) 271, 274, 531, 533, 566, 1247
AcsI RAATTY 5 cut(s) 359, 671, 764, 863, 1136
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 131
AfaI GTAC 3 cut(s) 12, 60, 990
AgsI TTSAA 9 cut(s) 427, 722, 812, 1121, 1128, 1175, 1203, 1263, 1270
AjnI CCWGG 3 cut(s) 334, 598, 689
AjuI GAANNNNNNNTTGG 2 cut(s) 1243, 1275
AluBI AGCT 9 cut(s) 226, 617, 725, 815, 949, 954, 1052, 1085, 1154
AluI AGCT 9 cut(s) 226, 617, 725, 815, 949, 954, 1052, 1085, 1154
Alw21I GWGCWC 1 cut(s) 351
Alw44I GTGCAC 1 cut(s) 347
AoxI GGCC 3 cut(s) 519, 538, 961
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 5 cut(s) 107, 173, 323, 770, 920
ApoI RAATTY 5 cut(s) 359, 671, 764, 863, 1136
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 4 cut(s) 220, 538, 602, 1111
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 3 cut(s) 220, 602, 1111
BaeGI GKGCMC 1 cut(s) 351
BarI GAAGNNNNNNTAC 2 cut(s) 601, 633
BbsI GAAGAC 2 cut(s) 165, 1224
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 5 cut(s) 119, 185, 335, 782, 907
BccI CCATC 3 cut(s) 688, 905, 1136
BceAI ACGGC 1 cut(s) 534
BciT130I CCWGG 3 cut(s) 336, 600, 691
BclI TGATCA 1 cut(s) 943
BfaI CTAG 2 cut(s) 624, 746
BfmI CTRYAG 2 cut(s) 185, 978
BfoI RGCGCY 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 7 cut(s) 108, 174, 274, 324, 531, 771, 921
BlpI GCTNAGC 1 cut(s) 950
BlsI GCNGC 7 cut(s) 109, 175, 275, 325, 532, 772, 922
Bme1390I CCNGG 3 cut(s) 336, 600, 691
Bme18I GGWCC 3 cut(s) 220, 602, 1111
BmgT120I GGNCC 4 cut(s) 220, 538, 602, 1111
BmiI GGNNCC 4 cut(s) 309, 1062, 1113, 1165
BmrFI CCNGG 3 cut(s) 336, 600, 691
BmsI GCATC 4 cut(s) 13, 204, 502, 1263
BpiI GAAGAC 2 cut(s) 165, 1224
BpmI CTGGAG 2 cut(s) 725, 879
Bpu1102I GCTNAGC 1 cut(s) 950
BpuEI CTTGAG 3 cut(s) 515, 1050, 1065
BsaAI YACGTR 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 334, 335, 531
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bse1I ACTGG 3 cut(s) 708, 826, 1256
Bse3DI GCAATG 1 cut(s) 885
BseBI CCWGG 3 cut(s) 336, 600, 691
BseDI CCNNGG 3 cut(s) 334, 335, 531
BseGI GGATG 3 cut(s) 699, 703, 916
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 2 cut(s) 585, 861
BseNI ACTGG 3 cut(s) 708, 826, 1256
BseRI GAGGAG 2 cut(s) 130, 1053
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 5 cut(s) 119, 185, 335, 782, 907
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 533
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 3 cut(s) 521, 540, 963
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 351
BslFI GGGAC 1 cut(s) 1097
BsmFI GGGAC 1 cut(s) 1097
BsnI GGCC 3 cut(s) 521, 540, 963
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 4 cut(s) 195, 484, 835, 943
Bsp1720I GCTNAGC 1 cut(s) 950
BspACI CCGC 6 cut(s) 271, 274, 531, 533, 566, 1247
BspANI GGCC 3 cut(s) 521, 540, 963
BspCNI CTCAG 2 cut(s) 586, 862
BspFNI CGCG 1 cut(s) 533
BspLI GGNNCC 4 cut(s) 309, 1062, 1113, 1165
BspMI ACCTGC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 885
BsrI ACTGG 3 cut(s) 708, 826, 1256
BssECI CCNNGG 3 cut(s) 334, 335, 531
BssMI GATC 4 cut(s) 195, 484, 835, 943
BssNI GRCGYC 1 cut(s) 131
Bst2UI CCWGG 3 cut(s) 336, 600, 691
Bst4CI ACNGT 4 cut(s) 63, 127, 970, 1230
Bst6I CTCTTC 5 cut(s) 96, 422, 427, 852, 1122
BstACI GRCGYC 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 214
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 2 cut(s) 253, 615
BstDEI CTNAG 3 cut(s) 594, 870, 950
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 3 cut(s) 699, 703, 916
BstFNI CGCG 1 cut(s) 533
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 4 cut(s) 198, 487, 838, 946
BstMBI GATC 4 cut(s) 195, 484, 835, 943
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 9 cut(s) 170, 214, 223, 248, 346, 527, 683, 960, 1058
BstNI CCWGG 3 cut(s) 336, 600, 691
BstSCI CCNGG 3 cut(s) 334, 598, 689
BstSFI CTRYAG 2 cut(s) 185, 978
BstSLI GKGCMC 1 cut(s) 351
BstUI CGCG 1 cut(s) 533
BstV1I GCAGC 5 cut(s) 119, 185, 335, 782, 907
BstV2I GAAGAC 2 cut(s) 165, 1224
BsuRI GGCC 3 cut(s) 521, 540, 963
BtgI CCRYGG 1 cut(s) 531
BtgZI GCGATG 1 cut(s) 807
BtsCI GGATG 3 cut(s) 699, 703, 916
BtsIMutI CAGTG 3 cut(s) 68, 132, 975
BveI ACCTGC 1 cut(s) 46
Cac8I GCNNGC 2 cut(s) 253, 615
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 4 cut(s) 220, 538, 602, 1111
Cfr42I CCGCGG 1 cut(s) 534
CseI GACGC 2 cut(s) 170, 675
Csp6I GTAC 3 cut(s) 11, 59, 989
CviAII CATG 2 cut(s) 475, 1007
CviQI GTAC 3 cut(s) 11, 59, 989
DdeI CTNAG 3 cut(s) 594, 870, 950
DpnI GATC 4 cut(s) 197, 486, 837, 945
DpnII GATC 4 cut(s) 195, 484, 835, 943
Eam1104I CTCTTC 5 cut(s) 96, 422, 427, 852, 1122
EarI CTCTTC 5 cut(s) 96, 422, 427, 852, 1122
EciI GGCGGA 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 963
Eco47I GGWCC 3 cut(s) 220, 602, 1111
Eco57I CTGAAG 1 cut(s) 546
EcoO109I RGGNCCY 2 cut(s) 538, 1111
EcoRII CCWGG 3 cut(s) 334, 598, 689
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 478, 1010
FalI AAGNNNNNCTT 2 cut(s) 702, 734
FaqI GGGAC 1 cut(s) 1097
FatI CATG 2 cut(s) 474, 1006
FbaI TGATCA 1 cut(s) 943
Fnu4HI GCNGC 7 cut(s) 108, 174, 274, 324, 531, 771, 921
FokI GGATG 3 cut(s) 706, 710, 923
Fsp4HI GCNGC 7 cut(s) 108, 174, 274, 324, 531, 771, 921
FspBI CTAG 2 cut(s) 624, 746
GlaI GCGC 1 cut(s) 182
GluI GCNGC 7 cut(s) 108, 174, 274, 324, 531, 771, 921
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 2 cut(s) 725, 879
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 3 cut(s) 521, 540, 963
HgaI GACGC 2 cut(s) 170, 675
HhaI GCGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 2 cut(s) 478, 1010
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HindIII AAGCTT 3 cut(s) 615, 1050, 1152
HinfI GANTC 5 cut(s) 191, 449, 461, 590, 1266
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 4 cut(s) 349, 605, 1072, 1090
Hpy188I TCNGA 9 cut(s) 91, 230, 526, 583, 595, 835, 855, 871, 1149
Hpy188III TCNNGA 8 cut(s) 44, 509, 633, 885, 896, 1106, 1263, 1270
Hpy8I GTNNAC 4 cut(s) 349, 605, 1072, 1090
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 313, 374
HpyCH4III ACNGT 4 cut(s) 63, 127, 970, 1230
HpyCH4IV ACGT 2 cut(s) 131, 607
HpyCH4V TGCA 9 cut(s) 4, 55, 349, 392, 656, 770, 823, 973, 1276
HpyF10VI GCNNNNNNNGC 9 cut(s) 170, 214, 223, 248, 346, 527, 683, 960, 1058
HpyF3I CTNAG 3 cut(s) 594, 870, 950
HpySE526I ACGT 2 cut(s) 131, 607
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 2 cut(s) 478, 1010
HspAI GCGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 943
KspI CCGCGG 1 cut(s) 534
Kzo9I GATC 4 cut(s) 195, 484, 835, 943
LmnI GCTCC 1 cut(s) 1066
Lsp1109I GCAGC 5 cut(s) 119, 185, 335, 782, 907
LweI GCATC 4 cut(s) 13, 204, 502, 1263
MaeI CTAG 2 cut(s) 624, 746
MaeII ACGT 2 cut(s) 131, 607
MaeIII GTNAC 3 cut(s) 127, 132, 383
MalI GATC 4 cut(s) 197, 486, 837, 945
MboI GATC 4 cut(s) 195, 484, 835, 943
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 6 cut(s) 359, 671, 764, 863, 915, 1136
MlyI GAGTC 2 cut(s) 185, 443
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 489, 1032
MslI CAYNNNNRTG 2 cut(s) 354, 855
MspA1I CMGCKG 1 cut(s) 533
MspR9I CCNGG 3 cut(s) 336, 600, 691
MvaI CCWGG 3 cut(s) 336, 600, 691
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 9 cut(s) 170, 214, 223, 248, 346, 527, 683, 960, 1058
NdeII GATC 4 cut(s) 195, 484, 835, 943
NlaIII CATG 2 cut(s) 478, 1010
NlaIV GGNNCC 4 cut(s) 309, 1062, 1113, 1165
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 2 cut(s) 127, 132
NsiI ATGCAT 1 cut(s) 6
PasI CCCWGGG 1 cut(s) 335
PceI AGGCCT 1 cut(s) 963
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 3 cut(s) 461, 590, 1266
PfoI TCCNGGA 1 cut(s) 689
PkrI GCNGC 7 cut(s) 109, 175, 275, 325, 532, 772, 922
Ple19I CGATCG 1 cut(s) 198
PleI GAGTC 2 cut(s) 185, 443
PpsI GAGTC 2 cut(s) 185, 443
Ppu21I YACGTR 1 cut(s) 608
PpuMI RGGWCCY 1 cut(s) 1111
Psp5II RGGWCCY 1 cut(s) 1111
Psp6I CCWGG 3 cut(s) 334, 598, 689
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 3 cut(s) 334, 598, 689
PspN4I GGNNCC 4 cut(s) 309, 1062, 1113, 1165
PspPI GGNCC 4 cut(s) 220, 538, 602, 1111
PspPPI RGGWCCY 1 cut(s) 1111
PsrI GAACNNNNNNTAC 2 cut(s) 628, 660
PvuI CGATCG 1 cut(s) 198
RsaI GTAC 3 cut(s) 12, 60, 990
RsaNI GTAC 3 cut(s) 11, 59, 989
RseI CAYNNNNRTG 2 cut(s) 354, 855
SacII CCGCGG 1 cut(s) 534
SaqAI TTAA 2 cut(s) 489, 1032
SatI GCNGC 7 cut(s) 108, 174, 274, 324, 531, 771, 921
Sau3AI GATC 4 cut(s) 195, 484, 835, 943
Sau96I GGNCC 4 cut(s) 220, 538, 602, 1111
SchI GAGTC 2 cut(s) 185, 443
ScrFI CCNGG 3 cut(s) 336, 600, 691
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 4 cut(s) 13, 204, 502, 1263
SfcI CTRYAG 2 cut(s) 185, 978
Sfr303I CCGCGG 1 cut(s) 534
SgrBI CCGCGG 1 cut(s) 534
SinI GGWCC 3 cut(s) 220, 602, 1111
SmiMI CAYNNNNRTG 2 cut(s) 354, 855
SmlI CTYRAG 3 cut(s) 494, 1065, 1080
SmoI CTYRAG 3 cut(s) 494, 1065, 1080
Sse9I AATT 6 cut(s) 359, 671, 764, 863, 915, 1136
SseBI AGGCCT 1 cut(s) 963
SsiI CCGC 6 cut(s) 271, 274, 531, 533, 566, 1247
SspMI CTAG 2 cut(s) 624, 746
StuI AGGCCT 1 cut(s) 963
StyD4I CCNGG 3 cut(s) 334, 598, 689
TaaI ACNGT 4 cut(s) 63, 127, 970, 1230
TaiI ACGT 2 cut(s) 134, 610
TaqI TCGA 3 cut(s) 156, 194, 404
TaqII GACCGA 1 cut(s) 23
TasI AATT 6 cut(s) 359, 671, 764, 863, 915, 1136
TatI WGTACW 2 cut(s) 10, 988
TauI GCSGC 2 cut(s) 276, 533
TfiI GAWTC 3 cut(s) 461, 590, 1266
Tru1I TTAA 2 cut(s) 489, 1032
Tru9I TTAA 2 cut(s) 489, 1032
TscAI CASTG 3 cut(s) 68, 132, 975
TseFI GTSAC 2 cut(s) 127, 132
TseI GCWGC 5 cut(s) 107, 173, 323, 770, 920
Tsp45I GTSAC 2 cut(s) 127, 132
TspDTI ATGAA 7 cut(s) 372, 675, 681, 714, 777, 810, 839
TspGWI ACGGA 3 cut(s) 300, 653, 1207
TspRI CASTG 3 cut(s) 68, 132, 975
VneI GTGCAC 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 220, 602, 1111
XapI RAATTY 5 cut(s) 359, 671, 764, 863, 1136
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XspI CTAG 2 cut(s) 624, 746
ZraI GACGTC 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.