Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002516

Physical Location & Seq

Genomic Coordinates Forward (+)

49928995 .. 49937204

Gene Structure 8210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGATGGCCAGGATGGATGAACTTGAGAAAGAAGAAAGTGAAGCTGAAAGTCGGATGGCACAAAGTGATGAGGATGAGCAACTTCAGCATGGTTTGCATCAGCTTTCGATCAGAAATCTCTCCATGGGAATCACAAAATTTCGGAGTACCGGTCAAGGAAACCTCCAGAGCAGACAAAATATGGAGTTGCTTCTAATGAAGATAGTTTTACGATGTGCCAAGTGGTTCGTATCTGGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006355 GO:0006357 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016591 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0030234 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035303 GO:0035305 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0080090 GO:0098772 GO:0140110 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

80

Amino Acids

9.24

Weight (kDa)

5.62

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03760
fragaria_vesca	FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750 FvH4_5g30750
malus_domestica	MD09G1244900.v1.1
prunus_persica	Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1 Prupe.4G278300_v2.0.a1
pyrus_communis	pycom09g16290
rosa_chinensis	RchiOBHm_Chr4g0410421 RchiOBHm_Chr7g0225641
rosa_laevigata	RLG00000001798 RLG00000033455
rosa_multiflora	Rmu_sc0003876.1_g000009
rosa_roxburghii	Rroxscaffold_1G00046790 Rroxscaffold_3G00233610 Rroxscaffold_3G00255650 Rroxscaffold_4G00302570
rosa_rugosa	Rorug05G0137300 Rorug07G0232100 Rorug07G0232100
rosa_samantha	Rh4AG006500 Rh4AG160600 Rh4CG172700 Rh7AG371600 Rh7BG366100 Rh7CG390300 Rh7DG377000
rosa_wichuraiana	Rw7G031800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	68
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	2 cut(s)	44, 103
AluI	AGCT	2 cut(s)	44, 103
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	137
AsiGI	ACCGGT	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	8
BccI	CCATC	2 cut(s)	7, 49
BciT130I	CCWGG	1 cut(s)	10
Bme1390I	CCNGG	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bse118I	RCCGGY	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	4 cut(s)	18, 22, 60, 79
BshFI	GGCC	1 cut(s)	8
BshTI	ACCGGT	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	150
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	123
BspANI	GGCC	1 cut(s)	8
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	4 cut(s)	18, 22, 60, 79
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 94
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	4 cut(s)	18, 22, 60, 79
Cfr10I	RCCGGY	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	147
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	2 cut(s)	89, 124
CviJI	RGCY	3 cut(s)	8, 44, 103
CviKI_1	RGCY	3 cut(s)	8, 44, 103
CviQI	GTAC	1 cut(s)	147
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
DraIII	CACNNNGTG	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	2 cut(s)	92, 127
FaiI	YATR	3 cut(s)	90, 125, 182
FatI	CATG	2 cut(s)	88, 123
FokI	GGATG	4 cut(s)	25, 29, 67, 86
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	150
Hin1II	CATG	2 cut(s)	92, 127
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	1 cut(s)	150
Hpy188I	TCNGA	3 cut(s)	54, 113, 144
Hpy188III	TCNNGA	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 94
Hsp92II	CATG	2 cut(s)	92, 127
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	4 cut(s)	22, 163, 179, 219
LweI	GCATC	1 cut(s)	106
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	2 cut(s)	44, 211
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	1 cut(s)	137
MluNI	TGGCCA	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	2 cut(s)	64, 173
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	85, 94
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	2 cut(s)	92, 127
PfeI	GAWTC	1 cut(s)	129
PinAI	ACCGGT	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	3 cut(s)	46, 105, 165
SfaNI	GCATC	1 cut(s)	106
SgeI	CNNG	9 cut(s)	21, 22, 35, 101, 136, 162, 167, 178, 232
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	123
TaqI	TCGA	1 cut(s)	107
TasI	AATT	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	33, 212
XapI	RAATTY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.