FvH4_3g19910

Xylosyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007023
Physical Location & Seq
Forward (+)
13054835 .. 13058726
3892 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19910.t1

Sequence Viewer

Length: 1260 bp
ATGGGGTCTGCAAACATGGAGAAGAAATGGCTATTCCCTCTTGTCATAAGCTCTTGTGTATGCTTATTCCTTCTAGCCACTTCCTTGAACTTGGGTCTTGTCGATTCACCACAGAAACTCTTATCCTCAATGTTACAATCTCGAGTAGCAACAAACCAAACCAGTGCAGCGTTTGCCGAAACAAAAGTTTCACAAGCTCCACCCCCTCCTGCAGTACCAGCTATTCCGCGTTTTGCTTATCTAATTTCAGGGTCAAAAGGGGATATGGAAAAGCTTTGGAGAACCCTTAAGGCTTTATACCATCCTTTGAATCACTATGTTCTTCATTTAGACCTTGAGGCACCAGTAGCAGAAAGATTGGAGCTTGCTTCACGTGTGCAGAACGAAACGATATTTAATCAAGTTGGGAATGTATTTATGATAAAAAAGGCTAATATGGTCACTTATAGAGGACCAACGATGGTTGCTAATACTCTTCATGCCTGTGCCATTCTCCTCAAGAGGAGTAAGGATTGGGATTGGTTTATCAACCTCAGCGCCTCAGATTATCCGCTTGTTACTCAAGATGATCTTCTTGACACCTTTTCAGGTCTAAATCGAGAACTGAATTTCATTGAGCATACAAGCCAGCTTGGTTGGAAGGAGGAAAAAAGAGCAATGCCTTTAATTTTAGACCCTGGTCTCTACTCATCAAATAAACAAGATGTGTTTTGGGTTACACCCAGGCGAGCATTGCCGACTTCCTTTAAGTTATTTACTGGTTCGGCATGGATGGTCCTGTCACGATGGTTTGTTGAGTACTGTGTTTGGGGTTGGGACAATTTACCAAGGACCCTTCTCATGTACTACACAAACTTTGTCTCCTCGCCGGAAGGCTACTTTCACACTGTTATATGCAATGTGCCGGAGTTTGCTAAAACTGCAGTCAACCATGATTTGCATTATATTTCTTGGGATATTCCTCCCAAACAGCATCCCCACACTCTTAATATTAATGACACAAGCAAGATGATTGGAAGTGGTGCTGCTTTTGCCCGGAAATTCAAGCACAATGACCCTGCCCTAGATAAGATTGATAAGGAGTTCCTTCACAGAAAAAAAGATGGTTTCACTCCTGGTGGTTGGTGTGCTGGAAAACCGAAATGCTCTAGGGTTGGGAACCCGAACAAGATCAAACCAGGTCCAGGGGCTGCAAGGCTTCGCACCCTTGTGGGTAGGCTGACATTGACAGCTAAGTTTGGTCAAAATCAGTGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

420

Amino Acids

47.23

Weight (kDa)

9.4

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 78 - 337 2.9e-81 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 340
AccII CGCG 1 cut(s) 229
AciI CCGC 2 cut(s) 227, 551
AcsI RAATTY 2 cut(s) 607, 1040
AcvI CACGTG 1 cut(s) 374
AfaI GTAC 3 cut(s) 216, 800, 845
AfiI CCNNNNNNNGG 1 cut(s) 1184
AflII CTTAAG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 3 cut(s) 88, 310, 1045
AjnI CCWGG 5 cut(s) 676, 722, 1114, 1177, 1183
AleI CACNNNNGTG 1 cut(s) 1208
AluBI AGCT 7 cut(s) 51, 197, 221, 274, 364, 631, 1232
AluI AGCT 7 cut(s) 51, 197, 221, 274, 364, 631, 1232
Alw26I GTCTC 2 cut(s) 686, 865
AlwNI CAGNNNCTG 1 cut(s) 1190
Ama87I CYCGRG 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 167, 1025, 1190
ApoI RAATTY 2 cut(s) 607, 1040
AseI ATTAAT 1 cut(s) 993
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 4 cut(s) 452, 775, 831, 1181
AsuC2I CCSGG 1 cut(s) 1036
AsuHPI GGTGA 1 cut(s) 99
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 4 cut(s) 452, 775, 831, 1181
BanI GGYRCC 1 cut(s) 340
BbrPI CACGTG 1 cut(s) 374
BbvCI CCTCAGC 1 cut(s) 533
BbvI GCAGC 3 cut(s) 179, 1012, 1177
BccI CCATC 5 cut(s) 309, 454, 766, 780, 1097
BciT130I CCWGG 5 cut(s) 678, 724, 1116, 1179, 1185
BcnI CCSGG 1 cut(s) 1036
BcoDI GTCTC 2 cut(s) 686, 865
BfaI CTAG 3 cut(s) 74, 1064, 1149
BfmI CTRYAG 2 cut(s) 210, 921
BfoI RGCGCY 1 cut(s) 540
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 3 cut(s) 168, 1026, 1191
BlsI GCNGC 3 cut(s) 169, 1027, 1192
BmcAI AGTACT 1 cut(s) 800
Bme1390I CCNGG 6 cut(s) 678, 724, 1036, 1116, 1179, 1185
Bme18I GGWCC 4 cut(s) 452, 775, 831, 1181
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 4 cut(s) 452, 775, 831, 1181
BmiI GGNNCC 3 cut(s) 342, 833, 1160
BmrFI CCNGG 6 cut(s) 678, 724, 1036, 1116, 1179, 1185
BmsI GCATC 1 cut(s) 982
BoxI GACNNNNGTC 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 533
BpuEI CTTGAG 3 cut(s) 356, 482, 546
BpuMI CCSGG 1 cut(s) 1036
BsaAI YACGTR 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 4 cut(s) 676, 722, 827, 1184
BsaXI ACNNNNNCTCC 2 cut(s) 845, 875
Bsc4I CCNNNNNNNGG 1 cut(s) 1184
Bse1I ACTGG 3 cut(s) 162, 344, 763
Bse3DI GCAATG 3 cut(s) 663, 731, 904
BseBI CCWGG 5 cut(s) 678, 724, 1116, 1179, 1185
BseDI CCNNGG 4 cut(s) 676, 722, 827, 1184
BseGI GGATG 3 cut(s) 301, 777, 973
BseLI CCNNNNNNNGG 1 cut(s) 1184
BseMI GCAATG 3 cut(s) 663, 731, 904
BseMII CTCAG 2 cut(s) 547, 555
BseNI ACTGG 3 cut(s) 162, 344, 763
BseRI GAGGAG 3 cut(s) 485, 517, 853
BseXI GCAGC 3 cut(s) 179, 1012, 1177
BsgI GTGCAG 2 cut(s) 186, 398
Bsh1236I CGCG 1 cut(s) 229
BshNI GGYRCC 1 cut(s) 340
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 3 cut(s) 869, 905, 1036
BslFI GGGAC 1 cut(s) 830
BslI CCNNNNNNNGG 1 cut(s) 1184
BsmAI GTCTC 2 cut(s) 686, 865
BsmFI GGGAC 1 cut(s) 830
Bso31I GGTCTC 1 cut(s) 686
BsoBI CYCGRG 1 cut(s) 141
Bsp143I GATC 2 cut(s) 568, 1170
BspACI CCGC 2 cut(s) 227, 551
BspCNI CTCAG 2 cut(s) 546, 554
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 3 cut(s) 342, 833, 1160
BspMAI CTGCAG 2 cut(s) 214, 925
BspT107I GGYRCC 1 cut(s) 340
BspTI CTTAAG 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 686
BsrDI GCAATG 3 cut(s) 663, 731, 904
BsrI ACTGG 3 cut(s) 162, 344, 763
BssECI CCNNGG 4 cut(s) 676, 722, 827, 1184
BssMI GATC 2 cut(s) 568, 1170
BssT1I CCWWGG 1 cut(s) 827
Bst2UI CCWGG 5 cut(s) 678, 724, 1116, 1179, 1185
Bst4CI ACNGT 2 cut(s) 803, 889
Bst6I CTCTTC 1 cut(s) 480
BstAFI CTTAAG 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 366, 629, 729
BstDEI CTNAG 3 cut(s) 533, 541, 1233
BstF5I GGATG 3 cut(s) 301, 777, 973
BstFNI CGCG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 540
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 2 cut(s) 571, 1173
BstMAI GTCTC 2 cut(s) 686, 865
BstMBI GATC 2 cut(s) 568, 1170
BstMWI GCNNNNNNNGC 6 cut(s) 173, 218, 347, 733, 920, 1031
BstNI CCWGG 5 cut(s) 678, 724, 1116, 1179, 1185
BstPAI GACNNNNGTC 1 cut(s) 678
BstSCI CCNGG 6 cut(s) 676, 722, 1034, 1114, 1177, 1183
BstSFI CTRYAG 2 cut(s) 210, 921
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 3 cut(s) 179, 1012, 1177
BtsCI GGATG 3 cut(s) 301, 777, 973
BtsIMutI CAGTG 3 cut(s) 169, 885, 1256
Cac8I GCNNGC 3 cut(s) 366, 629, 729
CaiI CAGNNNCTG 1 cut(s) 1190
CfoI GCGC 1 cut(s) 539
Cfr13I GGNCC 4 cut(s) 452, 775, 831, 1181
CsiI ACCWGGT 1 cut(s) 1177
Csp6I GTAC 3 cut(s) 215, 799, 844
CviAII CATG 5 cut(s) 16, 479, 768, 841, 932
CviQI GTAC 3 cut(s) 215, 799, 844
DdeI CTNAG 3 cut(s) 533, 541, 1233
DpnI GATC 2 cut(s) 570, 1172
DpnII GATC 2 cut(s) 568, 1170
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 827
Eco31I GGTCTC 1 cut(s) 686
Eco47I GGWCC 4 cut(s) 452, 775, 831, 1181
Eco72I CACGTG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 831
EcoRII CCWGG 5 cut(s) 676, 722, 1114, 1177, 1183
EcoT14I CCWWGG 1 cut(s) 827
ErhI CCWWGG 1 cut(s) 827
FaeI CATG 5 cut(s) 19, 482, 771, 844, 935
FalI AAGNNNNNCTT 2 cut(s) 555, 587
FaqI GGGAC 1 cut(s) 830
FatI CATG 5 cut(s) 15, 478, 767, 840, 931
Fnu4HI GCNGC 3 cut(s) 168, 1026, 1191
FokI GGATG 3 cut(s) 288, 784, 960
Fsp4HI GCNGC 3 cut(s) 168, 1026, 1191
FspBI CTAG 3 cut(s) 74, 1064, 1149
GlaI GCGC 1 cut(s) 538
GluI GCNGC 3 cut(s) 168, 1026, 1191
HaeII RGCGCY 1 cut(s) 540
HapII CCGG 3 cut(s) 869, 905, 1036
HhaI GCGC 1 cut(s) 539
Hin1II CATG 5 cut(s) 19, 482, 771, 844, 935
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 1 cut(s) 928
HindII GTYRAC 1 cut(s) 928
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 2 cut(s) 104, 310
HpaII CCGG 3 cut(s) 869, 905, 1036
HphI GGTGA 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 928
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 6 cut(s) 141, 499, 563, 575, 599, 783
Hpy8I GTNNAC 1 cut(s) 928
HpyAV CCTTC 5 cut(s) 80, 634, 845, 866, 1097
HpyCH4III ACNGT 2 cut(s) 803, 889
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 8 cut(s) 11, 167, 212, 379, 897, 923, 940, 1193
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 218, 347, 733, 920, 1031
HpyF3I CTNAG 3 cut(s) 533, 541, 1233
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 5 cut(s) 19, 482, 771, 844, 935
HspAI GCGC 1 cut(s) 537
Kzo9I GATC 2 cut(s) 568, 1170
LmnI GCTCC 2 cut(s) 202, 361
Lsp1109I GCAGC 3 cut(s) 179, 1012, 1177
LweI GCATC 1 cut(s) 982
MabI ACCWGGT 1 cut(s) 1177
MaeI CTAG 3 cut(s) 74, 1064, 1149
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 5 cut(s) 132, 439, 556, 715, 780
MalI GATC 2 cut(s) 570, 1172
MboI GATC 2 cut(s) 568, 1170
MboII GAAGA 4 cut(s) 34, 314, 467, 563
MluCI AATT 5 cut(s) 243, 607, 666, 820, 1040
MmeI TCCRAC 1 cut(s) 617
MseI TTAA 6 cut(s) 288, 396, 665, 747, 987, 993
MslI CAYNNNNRTG 2 cut(s) 483, 1208
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 3 cut(s) 869, 905, 1036
MspR9I CCNGG 6 cut(s) 678, 724, 1036, 1116, 1179, 1185
MvaI CCWGG 5 cut(s) 678, 724, 1116, 1179, 1185
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 6 cut(s) 173, 218, 347, 733, 920, 1031
NciI CCSGG 1 cut(s) 1036
NdeII GATC 2 cut(s) 568, 1170
NlaIII CATG 5 cut(s) 19, 482, 771, 844, 935
NlaIV GGNNCC 3 cut(s) 342, 833, 1160
NmuCI GTSAC 2 cut(s) 439, 780
OliI CACNNNNGTG 1 cut(s) 1208
PaeR7I CTCGAG 1 cut(s) 141
PfeI GAWTC 2 cut(s) 104, 310
PkrI GCNGC 3 cut(s) 169, 1027, 1192
PmaCI CACGTG 1 cut(s) 374
PmlI CACGTG 1 cut(s) 374
Ppu21I YACGTR 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 831
PshAI GACNNNNGTC 1 cut(s) 678
PshBI ATTAAT 1 cut(s) 993
Psp5II RGGWCCY 1 cut(s) 831
Psp6I CCWGG 5 cut(s) 676, 722, 1114, 1177, 1183
PspCI CACGTG 1 cut(s) 374
PspGI CCWGG 5 cut(s) 676, 722, 1114, 1177, 1183
PspN4I GGNNCC 3 cut(s) 342, 833, 1160
PspPI GGNCC 4 cut(s) 452, 775, 831, 1181
PspPPI RGGWCCY 1 cut(s) 831
PstI CTGCAG 2 cut(s) 214, 925
PstNI CAGNNNCTG 1 cut(s) 1190
RsaI GTAC 3 cut(s) 216, 800, 845
RsaNI GTAC 3 cut(s) 215, 799, 844
RseI CAYNNNNRTG 2 cut(s) 483, 1208
SaqAI TTAA 6 cut(s) 288, 396, 665, 747, 987, 993
SatI GCNGC 3 cut(s) 168, 1026, 1191
Sau3AI GATC 2 cut(s) 568, 1170
Sau96I GGNCC 4 cut(s) 452, 775, 831, 1181
ScaI AGTACT 1 cut(s) 800
ScrFI CCNGG 6 cut(s) 678, 724, 1036, 1116, 1179, 1185
SexAI ACCWGGT 1 cut(s) 1177
SfaNI GCATC 1 cut(s) 982
SfcI CTRYAG 2 cut(s) 210, 921
Sfr274I CTCGAG 1 cut(s) 141
SinI GGWCC 4 cut(s) 452, 775, 831, 1181
SlaI CTCGAG 1 cut(s) 141
SmiMI CAYNNNNRTG 2 cut(s) 483, 1208
SmlI CTYRAG 5 cut(s) 141, 287, 335, 497, 561
SmoI CTYRAG 5 cut(s) 141, 287, 335, 497, 561
Sse9I AATT 5 cut(s) 243, 607, 666, 820, 1040
SsiI CCGC 2 cut(s) 227, 551
SspI AATATT 1 cut(s) 991
SspMI CTAG 3 cut(s) 74, 1064, 1149
StyD4I CCNGG 6 cut(s) 676, 722, 1034, 1114, 1177, 1183
StyI CCWWGG 1 cut(s) 827
TaaI ACNGT 2 cut(s) 803, 889
TaiI ACGT 1 cut(s) 376
TaqI TCGA 3 cut(s) 102, 142, 598
TasI AATT 5 cut(s) 243, 607, 666, 820, 1040
TatI WGTACW 2 cut(s) 798, 843
TfiI GAWTC 2 cut(s) 104, 310
Tru1I TTAA 6 cut(s) 288, 396, 665, 747, 987, 993
Tru9I TTAA 6 cut(s) 288, 396, 665, 747, 987, 993
TscAI CASTG 3 cut(s) 169, 892, 1256
TseFI GTSAC 2 cut(s) 439, 780
TseI GCWGC 3 cut(s) 167, 1025, 1190
Tsp45I GTSAC 2 cut(s) 439, 780
TspDTI ATGAA 3 cut(s) 314, 467, 601
TspRI CASTG 3 cut(s) 169, 892, 1256
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 4 cut(s) 452, 775, 831, 1181
VspI ATTAAT 1 cut(s) 993
XapI RAATTY 2 cut(s) 607, 1040
XhoI CTCGAG 1 cut(s) 141
XspI CTAG 3 cut(s) 74, 1064, 1149
ZrmI AGTACT 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.