Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007023

Physical Location & Seq

Genomic Coordinates Reverse (-)

12760373 .. 12761294

Gene Structure 922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0140200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGACCCAAAGTAATCAGTTCATTAATGAGGTGATTGTTCTTTCTCAGATCAACCACAAAAATGTGGTGAAGCTTCTAGGTTGTTGTTTGGAGACCCAAACGCCATTATTAGTGTATGAGTTCGTCAGCAACGGAACACTTTATAAGCATATTCATAAAAAGAATGGCAAGGGACCGCTTTCCTTTGGGCTACGAATGAAGATAGCAACAGAAACAGCAGGATCACTAGCATACTTGCACTGCTCTACTTCGATGCAAATTGTGCACCGAGATGTGAAGGCAACAAACATCCTACTGGATGAGAACTTCACAGCGAAAGTGTCAGACTTTGGAGCTTCAAAATTGGTTCCCGAAGATCAAAATCAACTGTCTACTTTAGTGCAAGGGACGATAGGGTACTTGGACCCTGAATATCTTCAGTCAAACACACTGACAGAGAAAAGTGACGTATATAGCTTCGGCGTTGTCCTTGTGGAGCTAATAACAAGTCAGGTGGCAATTTCTTATCAGAAGCCTGAGGCGGAGAGAAGCCTAGCAAAAAATTTTGTTACTTCTGTGGAAGAGAATCGCCTAGATCAGATCCTCGATCATGAAATAATCAAAGAGGGGAGCTTCGAAACAGCTGAACAAGTAGCCCATCAGGCCAAAAGTTGTTTAAGTTTGAAAGGGAGCGATCGGCCTACCATGAAAGAAGTAGCAATGAAGCTGGAGGGACTTGCGTCACATTCAAAAGCCTACGTTGTTGATGTTAGAGGTGATGAAGGTGAAGTTATAACCAGTATTGACTACGACCGGAGCATCCAGATTCAACCCCTGATGATGAAGCCTTATGATGGAGGCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

281

Amino Acids

31.2

Weight (kDa)

5.65

Isoelectric Point (pI)

24.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 236	4.3e-42	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	4 - 232	2.8e-39	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53100 AT1G53100 AT3G15350 AT3G15350
fragaria_vesca	FvH4_3g19910 FvH4_3g19910 FvH4_3g19910
malus_domestica	MD03G1228200.v1.1 MD11G1247600.v1.1
prunus_persica	Prupe.4G180700_v2.0.a1 Prupe.4G180700_v2.0.a1 Prupe.4G180700_v2.0.a1
pyrus_communis	pycom03g17560
rosa_chinensis	RchiOBHm_Chr5g0033581
rosa_laevigata	RLG00000033490
rosa_multiflora	Rmu_sc0001768.1_g000005
rosa_roxburghii	Rroxscaffold_1G00046500
rosa_rugosa	Rorug05G0140100 Rorug05G0140100 Rorug05G0140200
rosa_samantha	Rh5AG231900 Rh5BG232600 Rh5CG261500 Rh5DG238100
rosa_wichuraiana	Rw5G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	144, 773
AccI	GTMKAC	1 cut(s)	371
AciI	CCGC	2 cut(s)	176, 521
AclWI	GGATC	2 cut(s)	229, 574
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	833
AgsI	TTSAA	4 cut(s)	339, 664, 729, 809
AluBI	AGCT	7 cut(s)	73, 335, 456, 478, 612, 623, 706
AluI	AGCT	7 cut(s)	73, 335, 456, 478, 612, 623, 706
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	1 cut(s)	86
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	2 cut(s)	229, 574
AoxI	GGCC	3 cut(s)	642, 677, 838
ApaLI	GTGCAC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	541
AseI	ATTAAT	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	173, 403
AsuHPI	GGTGA	4 cut(s)	43, 79, 767, 776
AsuII	TTCGAA	1 cut(s)	615
AvaII	GGWCC	2 cut(s)	173, 403
AxyI	CCTNAGG	1 cut(s)	516
BaeGI	GKGCMC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	2 cut(s)	645, 827
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	4 cut(s)	77, 227, 533, 572
BglI	GCCNNNNNGGC	1 cut(s)	641
Bme18I	GGWCC	2 cut(s)	173, 403
BmgT120I	GGNCC	2 cut(s)	173, 403
BmiI	GGNNCC	3 cut(s)	174, 348, 405
BmsI	GCATC	2 cut(s)	243, 807
BoxI	GACNNNNGTC	1 cut(s)	718
BpmI	CTGGAG	1 cut(s)	728
Bpu14I	TTCGAA	1 cut(s)	615
BsaBI	GATNNNNATC	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	792
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse1I	ACTGG	2 cut(s)	300, 777
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	705
Bse8I	GATNNNNATC	1 cut(s)	360
BseGI	GGATG	3 cut(s)	288, 304, 798
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	2 cut(s)	59, 507
BseNI	ACTGG	2 cut(s)	300, 777
BseSI	GKGCMC	1 cut(s)	267
Bsh1285I	CGRYCG	2 cut(s)	676, 793
BshFI	GGCC	3 cut(s)	644, 679, 840
BsiEI	CGRYCG	2 cut(s)	676, 793
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	793
BslFI	GGGAC	3 cut(s)	186, 400, 726
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	3 cut(s)	186, 400, 726
BsnI	GGCC	3 cut(s)	644, 679, 840
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	7 cut(s)	48, 221, 355, 574, 579, 586, 673
BspACI	CCGC	2 cut(s)	176, 521
BspANI	GGCC	3 cut(s)	644, 679, 840
BspCNI	CTCAG	2 cut(s)	58, 508
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	3 cut(s)	174, 348, 405
BspPI	GGATC	2 cut(s)	229, 574
BspT104I	TTCGAA	1 cut(s)	615
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	2 cut(s)	300, 777
BssMI	GATC	7 cut(s)	48, 221, 355, 574, 579, 586, 673
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	555
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	615
BstDEI	CTNAG	2 cut(s)	45, 516
BstF5I	GGATG	3 cut(s)	288, 304, 798
BstKTI	GATC	7 cut(s)	51, 224, 358, 577, 582, 589, 676
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	7 cut(s)	48, 221, 355, 574, 579, 586, 673
BstMCI	CGRYCG	2 cut(s)	676, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 641
BstPAI	GACNNNNGTC	1 cut(s)	718
BstSLI	GKGCMC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	3 cut(s)	644, 679, 840
BtsCI	GGATG	3 cut(s)	288, 304, 798
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	238, 428
CciI	TCATGA	1 cut(s)	589
Cfr13I	GGNCC	2 cut(s)	173, 403
CseI	GACGC	1 cut(s)	708
Csp6I	GTAC	1 cut(s)	397
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	2 cut(s)	590, 685
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	45, 516
DpnI	GATC	7 cut(s)	50, 223, 357, 576, 581, 588, 675
DpnII	GATC	7 cut(s)	48, 221, 355, 574, 579, 586, 673
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
EciI	GGCGGA	1 cut(s)	536
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	173, 403
Eco57I	CTGAAG	1 cut(s)	401
Eco81I	CCTNAGG	1 cut(s)	516
FaeI	CATG	2 cut(s)	593, 688
FaqI	GGGAC	3 cut(s)	186, 400, 726
FatI	CATG	2 cut(s)	589, 684
FblI	GTMKAC	1 cut(s)	371
FokI	GGATG	3 cut(s)	275, 311, 785
FspBI	CTAG	4 cut(s)	77, 227, 533, 572
GsuI	CTGGAG	1 cut(s)	728
HaeIII	GGCC	3 cut(s)	644, 679, 840
HapII	CCGG	1 cut(s)	793
HgaI	GACGC	1 cut(s)	708
Hin1II	CATG	2 cut(s)	593, 688
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	565, 805
HpaII	CCGG	1 cut(s)	793
HphI	GGTGA	4 cut(s)	43, 79, 767, 776
Hpy166II	GTNNAC	2 cut(s)	265, 372
Hpy188I	TCNGA	4 cut(s)	48, 325, 510, 579
Hpy188III	TCNNGA	3 cut(s)	350, 590, 802
Hpy8I	GTNNAC	2 cut(s)	265, 372
HpyAV	CCTTC	2 cut(s)	271, 755
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	2 cut(s)	447, 738
HpyCH4V	TGCA	4 cut(s)	238, 256, 265, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 641
HpyF3I	CTNAG	2 cut(s)	45, 516
HpySE526I	ACGT	2 cut(s)	447, 738
Hsp92II	CATG	2 cut(s)	593, 688
Kzo9I	GATC	7 cut(s)	48, 221, 355, 574, 579, 586, 673
LmnI	GCTCC	5 cut(s)	332, 475, 609, 669, 795
LweI	GCATC	2 cut(s)	243, 807
MaeI	CTAG	4 cut(s)	77, 227, 533, 572
MaeII	ACGT	2 cut(s)	447, 738
MaeIII	GTNAC	3 cut(s)	443, 547, 720
MalI	GATC	7 cut(s)	50, 223, 357, 576, 581, 588, 675
MboI	GATC	7 cut(s)	48, 221, 355, 574, 579, 586, 673
MboII	GAAGA	4 cut(s)	211, 365, 407, 572
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	4 cut(s)	258, 341, 498, 541
MnlI	CCTC	7 cut(s)	22, 511, 593, 598, 703, 746, 830
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	2 cut(s)	24, 656
MslI	CAYNNNNRTG	2 cut(s)	60, 270
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	793
MwoI	GCNNNNNNNGC	2 cut(s)	262, 641
NdeII	GATC	7 cut(s)	48, 221, 355, 574, 579, 586, 673
NlaIII	CATG	2 cut(s)	593, 688
NlaIV	GGNNCC	3 cut(s)	174, 348, 405
NmuCI	GTSAC	2 cut(s)	443, 720
NspV	TTCGAA	1 cut(s)	615
PagI	TCATGA	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	565, 805
Ple19I	CGATCG	1 cut(s)	676
PshAI	GACNNNNGTC	1 cut(s)	718
PshBI	ATTAAT	1 cut(s)	24
PsiI	TTATAA	2 cut(s)	144, 773
PspN4I	GGNNCC	3 cut(s)	174, 348, 405
PspPI	GGNCC	2 cut(s)	173, 403
PsuI	RGATCY	1 cut(s)	579
PvuI	CGATCG	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	2 cut(s)	60, 270
SaqAI	TTAA	2 cut(s)	24, 656
Sau3AI	GATC	7 cut(s)	48, 221, 355, 574, 579, 586, 673
Sau96I	GGNCC	2 cut(s)	173, 403
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	2 cut(s)	243, 807
SfuI	TTCGAA	1 cut(s)	615
SinI	GGWCC	2 cut(s)	173, 403
SmiMI	CAYNNNNRTG	2 cut(s)	60, 270
Sse9I	AATT	4 cut(s)	258, 341, 498, 541
SsiI	CCGC	2 cut(s)	176, 521
SspMI	CTAG	4 cut(s)	77, 227, 533, 572
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	2 cut(s)	450, 741
TaqI	TCGA	3 cut(s)	251, 585, 615
TasI	AATT	4 cut(s)	258, 341, 498, 541
TfiI	GAWTC	2 cut(s)	565, 805
Tru1I	TTAA	2 cut(s)	24, 656
Tru9I	TTAA	2 cut(s)	24, 656
TscAI	CASTG	2 cut(s)	245, 435
TseFI	GTSAC	2 cut(s)	443, 720
Tsp45I	GTSAC	2 cut(s)	443, 720
TspDTI	ATGAA	8 cut(s)	10, 143, 212, 606, 701, 716, 774, 836
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	245, 435
VneI	GTGCAC	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	173, 403
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	1 cut(s)	541
XmiI	GTMKAC	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	4 cut(s)	77, 227, 533, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.