Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001768.1

Orthogroup ID

OG0007023

Physical Location & Seq

Genomic Coordinates Forward (+)

23644 .. 25712

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001768.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgttacaatctcgagtagcaacaaaccaaaccgctgcagctttcgctgaggcaaaagtttcacaagctccaccccctcccgcagtaccagctattcctcgttttgcttatctaatttcagggtcaaaaggggatatggaaaagctttggagaacccttaaggccctataccatcctttgaatcactatgttcttcatttagaccttgaggcaccagtagcagaaagattggagcttgcttcacgagtgcaaaacgaaacaatgtttcataatgttgggaatgtatttatgataaaaaaggctaatatggtcacttatagaggaccaacaatggttgctaatactcttcatgcctgtgccattctgctcaggaggagtaaggattgggattggtttatcaacctcagtgcctcagattatccgcttgttactcaagatgatcttcttcacaccttttcaggtctaaatcgagaactgaatttcattgagcatactagccagcttggttggaaggaggaaaaaagagcaatgcctttaattctagaccctggtctctactcagcaaataaacaagatgtctttttcgttacaccccggcgaacattgccaacttcctttaaattgtttactggttcggcatggatggtcctgtcacgatggtttgttgagtactgcgtttggggttgggacaatctaccaaggacccttctcatgtattacacaaactttgtctcctcgcctgaaggctactttcatactgttatatgcaatgtgccagagtttgctaaaactgcagtcaaccatgatttgcactatatttcttgggatattcctcccaaacagcatcctcacacccttaacataaatgacacaagcaagatgattggaagtggtgctgcctttgcccggaaattcaaacacaatgaccctgccctagataagattgataaagagttacttcacagaagaaaagatggcttcactcctggtggttggtgtgctggaaaacggaaatgcaccagggttgggaacccaaacaagatcaaaccaggtcaaggggctgaaaggcttcgcgcccttgtggataggctgacattgacagctaagtttggtcaaaaccagtgtaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

376

Amino Acids

42.78

Weight (kDa)

9.48

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53100 AT1G53100 AT3G15350 AT3G15350
fragaria_vesca	FvH4_3g19910 FvH4_3g19910 FvH4_3g19910
malus_domestica	MD03G1228200.v1.1 MD11G1247600.v1.1
prunus_persica	Prupe.4G180700_v2.0.a1 Prupe.4G180700_v2.0.a1 Prupe.4G180700_v2.0.a1
pyrus_communis	pycom03g17560
rosa_chinensis	RchiOBHm_Chr5g0033581
rosa_laevigata	RLG00000033490
rosa_multiflora	Rmu_sc0001768.1_g000005
rosa_roxburghii	Rroxscaffold_1G00046500
rosa_rugosa	Rorug05G0140100 Rorug05G0140100 Rorug05G0140200
rosa_samantha	Rh5AG231900 Rh5BG232600 Rh5CG261500 Rh5DG238100
rosa_wichuraiana	Rw5G021160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AccII	CGCG	1 cut(s)	1074
AciI	CCGC	3 cut(s)	33, 81, 422
AcsI	RAATTY	2 cut(s)	478, 911
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	2 cut(s)	87, 671
AfiI	CCNNNNNNNGG	3 cut(s)	906, 1026, 1055
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	181, 916
AjnI	CCWGG	4 cut(s)	547, 985, 1019, 1048
AluBI	AGCT	7 cut(s)	41, 68, 92, 145, 235, 502, 1103
AluI	AGCT	7 cut(s)	41, 68, 92, 145, 235, 502, 1103
Alw26I	GTCTC	2 cut(s)	557, 736
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	35, 38, 896
ApoI	RAATTY	2 cut(s)	478, 911
Asp700I	GAANNNNTTC	1 cut(s)	1068
AspLEI	GCGC	1 cut(s)	1076
AspS9I	GGNCC	4 cut(s)	163, 323, 646, 702
AsuC2I	CCSGG	2 cut(s)	595, 907
AvaI	CYCGRG	1 cut(s)	12
AvaII	GGWCC	3 cut(s)	323, 646, 702
BanI	GGYRCC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	243
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	22, 50, 883
BccI	CCATC	4 cut(s)	180, 637, 651, 968
BciT130I	CCWGG	4 cut(s)	549, 987, 1021, 1050
BcnI	CCSGG	2 cut(s)	595, 907
BcoDI	GTCTC	2 cut(s)	557, 736
BfaI	CTAG	3 cut(s)	495, 542, 935
BfmI	CTRYAG	2 cut(s)	36, 792
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	3 cut(s)	36, 39, 897
BlsI	GCNGC	3 cut(s)	37, 40, 898
BmcAI	AGTACT	1 cut(s)	671
Bme1390I	CCNGG	6 cut(s)	549, 595, 907, 987, 1021, 1050
Bme18I	GGWCC	3 cut(s)	323, 646, 702
BmeT110I	CYCGRG	1 cut(s)	12
BmgT120I	GGNCC	4 cut(s)	163, 323, 646, 702
BmiI	GGNNCC	3 cut(s)	213, 704, 1031
BmrFI	CCNGG	6 cut(s)	549, 595, 907, 987, 1021, 1050
BmsI	GCATC	1 cut(s)	853
BoxI	GACNNNNGTC	1 cut(s)	549
Bpu10I	CCTNAGC	2 cut(s)	48, 368
BpuEI	CTTGAG	2 cut(s)	227, 417
BpuMI	CCSGG	2 cut(s)	595, 907
BsaI	GGTCTC	1 cut(s)	557
BsaJI	CCNNGG	4 cut(s)	547, 593, 698, 1020
BsaXI	ACNNNNNCTCC	2 cut(s)	716, 746
Bsc4I	CCNNNNNNNGG	3 cut(s)	906, 1026, 1055
Bse1I	ACTGG	3 cut(s)	215, 634, 1120
Bse3DI	GCAATG	3 cut(s)	534, 602, 775
BseBI	CCWGG	4 cut(s)	549, 987, 1021, 1050
BseDI	CCNNGG	4 cut(s)	547, 593, 698, 1020
BseGI	GGATG	3 cut(s)	172, 648, 844
BseLI	CCNNNNNNNGG	3 cut(s)	906, 1026, 1055
BseMI	GCAATG	3 cut(s)	534, 602, 775
BseMII	CTCAG	5 cut(s)	39, 382, 418, 426, 573
BseNI	ACTGG	3 cut(s)	215, 634, 1120
BseRI	GAGGAG	2 cut(s)	388, 724
BseXI	GCAGC	3 cut(s)	22, 50, 883
Bsh1236I	CGCG	1 cut(s)	1074
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	595, 907
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	3 cut(s)	906, 1026, 1055
BsmAI	GTCTC	2 cut(s)	557, 736
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	557
BsoBI	CYCGRG	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	439, 1041
BspACI	CCGC	3 cut(s)	33, 81, 422
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	5 cut(s)	40, 381, 417, 425, 572
BspFNI	CGCG	1 cut(s)	1074
BspLI	GGNNCC	3 cut(s)	213, 704, 1031
BspMAI	CTGCAG	2 cut(s)	40, 796
BspT107I	GGYRCC	1 cut(s)	211
BspTI	CTTAAG	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	557
BsrDI	GCAATG	3 cut(s)	534, 602, 775
BsrI	ACTGG	3 cut(s)	215, 634, 1120
BssECI	CCNNGG	4 cut(s)	547, 593, 698, 1020
BssMI	GATC	2 cut(s)	439, 1041
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	698
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	4 cut(s)	549, 987, 1021, 1050
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	237, 500
BstDEI	CTNAG	6 cut(s)	48, 368, 404, 412, 559, 1104
BstF5I	GGATG	3 cut(s)	172, 648, 844
BstFNI	CGCG	1 cut(s)	1074
BstHHI	GCGC	1 cut(s)	1076
BstKTI	GATC	2 cut(s)	442, 1044
BstMAI	GTCTC	2 cut(s)	557, 736
BstMBI	GATC	2 cut(s)	439, 1041
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 89, 218, 604, 791, 902
BstNI	CCWGG	4 cut(s)	549, 987, 1021, 1050
BstPAI	GACNNNNGTC	1 cut(s)	549
BstSCI	CCNGG	6 cut(s)	547, 593, 905, 985, 1019, 1048
BstSFI	CTRYAG	2 cut(s)	36, 792
BstUI	CGCG	1 cut(s)	1074
BstV1I	GCAGC	3 cut(s)	22, 50, 883
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	3 cut(s)	172, 648, 844
BtsIMutI	CAGTG	2 cut(s)	412, 1127
Cac8I	GCNNGC	2 cut(s)	237, 500
CfoI	GCGC	1 cut(s)	1076
Cfr13I	GGNCC	4 cut(s)	163, 323, 646, 702
CsiI	ACCWGGT	1 cut(s)	1048
Csp6I	GTAC	2 cut(s)	86, 670
CviAII	CATG	4 cut(s)	350, 639, 712, 803
CviQI	GTAC	2 cut(s)	86, 670
DdeI	CTNAG	6 cut(s)	48, 368, 404, 412, 559, 1104
DpnI	GATC	2 cut(s)	441, 1043
DpnII	GATC	2 cut(s)	439, 1041
DraI	TTTAAA	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	698
Eco31I	GGTCTC	1 cut(s)	557
Eco47I	GGWCC	3 cut(s)	323, 646, 702
Eco57I	CTGAAG	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	12
EcoO109I	RGGNCCY	2 cut(s)	163, 702
EcoRII	CCWGG	4 cut(s)	547, 985, 1019, 1048
EcoT14I	CCWWGG	1 cut(s)	698
ErhI	CCWWGG	1 cut(s)	698
FaeI	CATG	4 cut(s)	353, 642, 715, 806
FalI	AAGNNNNNCTT	4 cut(s)	426, 458, 942, 974
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	4 cut(s)	349, 638, 711, 802
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	36, 39, 897
FokI	GGATG	3 cut(s)	159, 655, 831
Fsp4HI	GCNGC	3 cut(s)	36, 39, 897
FspBI	CTAG	3 cut(s)	495, 542, 935
GlaI	GCGC	1 cut(s)	1075
GluI	GCNGC	3 cut(s)	36, 39, 897
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	2 cut(s)	595, 907
HhaI	GCGC	1 cut(s)	1076
Hin1II	CATG	4 cut(s)	353, 642, 715, 806
Hin6I	GCGC	1 cut(s)	1074
HinP1I	GCGC	1 cut(s)	1074
HincII	GTYRAC	1 cut(s)	799
HindII	GTYRAC	1 cut(s)	799
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	595, 907
Hpy166II	GTNNAC	2 cut(s)	627, 799
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	7 cut(s)	12, 243, 370, 434, 470, 542, 654
Hpy8I	GTNNAC	2 cut(s)	627, 799
HpyAV	CCTTC	3 cut(s)	505, 716, 737
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4V	TGCA	6 cut(s)	38, 250, 768, 794, 811, 1017
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 89, 218, 604, 791, 902
HpyF3I	CTNAG	6 cut(s)	48, 368, 404, 412, 559, 1104
Hsp92II	CATG	4 cut(s)	353, 642, 715, 806
HspAI	GCGC	1 cut(s)	1074
Kzo9I	GATC	2 cut(s)	439, 1041
LmnI	GCTCC	2 cut(s)	73, 232
Lsp1109I	GCAGC	3 cut(s)	22, 50, 883
LweI	GCATC	1 cut(s)	853
MabI	ACCWGGT	1 cut(s)	1048
MaeI	CTAG	3 cut(s)	495, 542, 935
MaeIII	GTNAC	6 cut(s)	3, 310, 427, 586, 651, 954
MalI	GATC	2 cut(s)	441, 1043
MboI	GATC	2 cut(s)	439, 1041
MboII	GAAGA	5 cut(s)	185, 338, 434, 437, 978
MluCI	AATT	5 cut(s)	114, 478, 537, 620, 911
MmeI	TCCRAC	1 cut(s)	488
MroXI	GAANNNNTTC	1 cut(s)	1068
MseI	TTAA	4 cut(s)	159, 536, 618, 858
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	35
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	2 cut(s)	595, 907
MspR9I	CCNGG	6 cut(s)	549, 595, 907, 987, 1021, 1050
MvaI	CCWGG	4 cut(s)	549, 987, 1021, 1050
MvnI	CGCG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	6 cut(s)	44, 89, 218, 604, 791, 902
NciI	CCSGG	2 cut(s)	595, 907
NdeII	GATC	2 cut(s)	439, 1041
NlaIII	CATG	4 cut(s)	353, 642, 715, 806
NlaIV	GGNNCC	3 cut(s)	213, 704, 1031
NmuCI	GTSAC	2 cut(s)	310, 651
PaeR7I	CTCGAG	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	1068
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	3 cut(s)	37, 40, 898
PpuMI	RGGWCCY	1 cut(s)	702
PshAI	GACNNNNGTC	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	702
Psp6I	CCWGG	4 cut(s)	547, 985, 1019, 1048
PspGI	CCWGG	4 cut(s)	547, 985, 1019, 1048
PspN4I	GGNNCC	3 cut(s)	213, 704, 1031
PspPI	GGNCC	4 cut(s)	163, 323, 646, 702
PspPPI	RGGWCCY	1 cut(s)	702
PstI	CTGCAG	2 cut(s)	40, 796
RsaI	GTAC	2 cut(s)	87, 671
RsaNI	GTAC	2 cut(s)	86, 670
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	159, 536, 618, 858
SatI	GCNGC	3 cut(s)	36, 39, 897
Sau3AI	GATC	2 cut(s)	439, 1041
Sau96I	GGNCC	4 cut(s)	163, 323, 646, 702
ScaI	AGTACT	1 cut(s)	671
ScrFI	CCNGG	6 cut(s)	549, 595, 907, 987, 1021, 1050
SexAI	ACCWGGT	1 cut(s)	1048
SfaNI	GCATC	1 cut(s)	853
SfcI	CTRYAG	2 cut(s)	36, 792
Sfr274I	CTCGAG	1 cut(s)	12
SinI	GGWCC	3 cut(s)	323, 646, 702
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	4 cut(s)	12, 158, 206, 432
SmoI	CTYRAG	4 cut(s)	12, 158, 206, 432
Sse9I	AATT	5 cut(s)	114, 478, 537, 620, 911
SsiI	CCGC	3 cut(s)	33, 81, 422
SspMI	CTAG	3 cut(s)	495, 542, 935
StyD4I	CCNGG	6 cut(s)	547, 593, 905, 985, 1019, 1048
StyI	CCWWGG	1 cut(s)	698
TaaI	ACNGT	1 cut(s)	760
TaqI	TCGA	2 cut(s)	13, 469
TasI	AATT	5 cut(s)	114, 478, 537, 620, 911
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	4 cut(s)	159, 536, 618, 858
Tru9I	TTAA	4 cut(s)	159, 536, 618, 858
TscAI	CASTG	2 cut(s)	412, 1127
TseFI	GTSAC	2 cut(s)	310, 651
TseI	GCWGC	3 cut(s)	35, 38, 896
Tsp45I	GTSAC	2 cut(s)	310, 651
TspDTI	ATGAA	5 cut(s)	185, 257, 338, 472, 743
TspGWI	ACGGA	1 cut(s)	1024
TspRI	CASTG	2 cut(s)	412, 1127
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	3 cut(s)	323, 646, 702
XapI	RAATTY	2 cut(s)	478, 911
XbaI	TCTAGA	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	3 cut(s)	495, 542, 935
ZrmI	AGTACT	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.